Wall clock time and date at job start Tue Mar 31 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.64402 * 2 1 4 4 O 1.20827 * 119.99675 * 125.49244 * 3 2 1 5 5 O 1.34225 * 120.00266 * 305.49324 * 3 2 1 6 6 C 1.45199 * 117.00052 * 185.20575 * 5 3 2 7 7 C 1.53005 * 109.46907 * 184.80051 * 6 5 3 8 8 C 1.50704 * 112.99736 * 304.70496 * 7 6 5 9 9 H 1.08002 * 119.99175 * 125.10122 * 8 7 6 10 10 C 1.37878 * 120.00440 * 305.38193 * 8 7 6 11 11 N 1.31506 * 120.00160 * 174.10352 * 10 8 7 12 12 Si 1.86800 * 119.99833 * 354.09821 * 10 8 7 13 13 H 1.48503 * 109.47121 * 93.99739 * 12 10 8 14 14 H 1.48496 * 109.47127 * 214.00004 * 12 10 8 15 15 H 1.48505 * 109.47023 * 334.00101 * 12 10 8 16 16 C 1.54029 * 113.82104 * 76.53704 * 7 6 5 17 17 O 1.44451 * 85.42578 * 91.80925 * 16 7 6 18 18 C 1.44178 * 93.37803 * 24.08846 * 17 16 7 19 19 C 1.53022 * 109.81396 * 239.47221 * 2 1 3 20 20 C 1.50072 * 110.14808 * 289.64886 * 19 2 1 21 21 C 1.29438 * 124.07466 * 342.87230 * 20 19 2 22 22 C 1.50063 * 124.07604 * 0.46451 * 21 20 19 23 23 C 1.53016 * 110.14854 * 342.87036 * 22 21 20 24 24 H 1.09001 * 109.47447 * 59.99418 * 1 2 3 25 25 H 1.08999 * 109.47447 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46931 * 299.99966 * 1 2 3 27 27 H 1.09000 * 109.47682 * 64.79876 * 6 5 3 28 28 H 1.08999 * 109.47044 * 304.79332 * 6 5 3 29 29 H 0.96996 * 120.00189 * 179.97438 * 11 10 8 30 30 H 1.09001 * 113.86695 * 205.91455 * 16 7 6 31 31 H 1.08996 * 113.86494 * 337.62049 * 16 7 6 32 32 H 1.08999 * 113.86083 * 221.76602 * 18 17 16 33 33 H 1.08998 * 113.86046 * 90.06187 * 18 17 16 34 34 H 1.08999 * 109.36016 * 49.85578 * 19 2 1 35 35 H 1.09001 * 109.36079 * 169.44141 * 19 2 1 36 36 H 1.08004 * 117.96303 * 162.89071 * 20 19 2 37 37 H 1.07999 * 117.96203 * 180.44077 * 21 20 19 38 38 H 1.09007 * 109.35981 * 222.65966 * 22 21 20 39 39 H 1.09004 * 109.24661 * 103.01256 * 22 21 20 40 40 H 1.08997 * 109.64563 * 289.75050 * 23 22 21 41 41 H 1.09001 * 109.64696 * 169.11755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4192 0.0000 4 8 2.8118 1.7839 0.8520 5 8 1.6266 2.2782 -0.9464 6 6 2.2426 3.5930 -0.9548 7 6 1.5694 4.4648 -2.0168 8 6 1.5884 3.8415 -3.3888 9 1 0.6653 3.7053 -3.9327 10 6 2.7833 3.4399 -3.9472 11 7 2.7895 2.7919 -5.0915 12 14 4.3935 3.8163 -3.0782 13 1 4.7824 2.6586 -2.2332 14 1 5.4529 4.0706 -4.0873 15 1 4.2253 5.0188 -2.2232 16 6 0.1883 5.0020 -1.5967 17 8 0.9131 6.1511 -1.1057 18 6 2.0268 5.9356 -1.9956 19 6 2.0486 -0.7313 -1.2401 20 6 1.7782 -2.2028 -1.1233 21 6 1.4895 -2.8012 -0.0125 22 6 1.3752 -2.1055 1.3123 23 6 2.0456 -0.7317 1.2457 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.3038 3.4957 -1.1839 28 1 2.1233 4.0564 0.0245 29 1 3.6302 2.5097 -5.4845 30 1 -0.4727 5.2227 -2.4348 31 1 -0.2935 4.4157 -0.8143 32 1 3.0000 6.0881 -1.5289 33 1 1.9284 6.4419 -2.9558 34 1 1.5474 -0.3410 -2.1258 35 1 3.1222 -0.5676 -1.3334 36 1 1.8277 -2.7997 -2.0221 37 1 1.3201 -3.8674 -0.0408 38 1 1.8611 -2.7079 2.0799 39 1 0.3217 -1.9818 1.5634 40 1 3.1265 -0.8543 1.1775 41 1 1.7945 -0.1578 2.1377 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123060157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:20 Heat of formation + Delta-G solvation = -100.178590 kcal Electronic energy + Delta-G solvation = -23346.309991 eV Core-core repulsion = 19999.317439 eV Total energy + Delta-G solvation = -3346.992552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13125 -41.25086 -39.54352 -37.48923 -34.99154 -33.51974 -32.33996 -31.79281 -28.15630 -27.63198 -27.50477 -26.22481 -24.76691 -23.90246 -21.26099 -20.59461 -19.11474 -18.65271 -18.13411 -17.98660 -17.68666 -16.98824 -16.71510 -16.29828 -15.98815 -15.52361 -15.42355 -14.98873 -14.69510 -14.65445 -14.24779 -14.03594 -13.70561 -13.53237 -13.20616 -13.00803 -12.85425 -12.82611 -12.65118 -12.58834 -12.16098 -12.02171 -11.79226 -11.69276 -11.40020 -11.20542 -11.09291 -11.00194 -10.71264 -10.42609 -9.90525 -8.36911 -6.38280 1.06448 1.17061 1.22345 1.29068 1.40063 1.65166 2.20402 2.86759 2.97845 3.35232 3.50902 3.68374 3.72899 3.90914 3.96109 4.09564 4.19807 4.28223 4.30146 4.35250 4.44000 4.51978 4.57603 4.61173 4.68380 4.70238 4.83901 4.87637 4.95733 5.00206 5.03571 5.12721 5.21755 5.22284 5.28192 5.35952 5.46184 5.53670 5.74901 6.03440 6.20366 6.61870 6.69122 7.25450 8.78848 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019683 B = 0.006363 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.180152 B = 4399.372062 C = 4960.764604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C 0.455 3.545 4 O -0.545 6.545 5 O -0.331 6.331 6 C 0.090 3.910 7 C -0.033 4.033 8 C -0.492 4.492 9 H 0.053 0.947 10 C 0.041 3.959 11 N -0.930 5.930 12 Si 0.897 3.103 13 H -0.294 1.294 14 H -0.287 1.287 15 H -0.221 1.221 16 C 0.059 3.941 17 O -0.404 6.404 18 C 0.038 3.962 19 C -0.081 4.081 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.087 4.087 23 C -0.097 4.097 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.266 0.734 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 -9.170 11.341 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.048 4.048 3 C 0.300 3.700 4 O -0.436 6.436 5 O -0.246 6.246 6 C 0.016 3.984 7 C -0.034 4.034 8 C -0.529 4.529 9 H 0.071 0.929 10 C -0.159 4.159 11 N -0.568 5.568 12 Si 0.725 3.275 13 H -0.222 1.222 14 H -0.214 1.214 15 H -0.145 1.145 16 C -0.017 4.017 17 O -0.324 6.324 18 C -0.039 4.039 19 C -0.118 4.118 20 C -0.180 4.180 21 C -0.162 4.162 22 C -0.123 4.123 23 C -0.135 4.135 24 H 0.078 0.922 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.567 -8.890 11.623 15.061 hybrid contribution 1.488 0.239 -0.438 1.569 sum -2.080 -8.651 11.184 14.292 Atomic orbital electron populations 1.21897 0.89695 1.04687 1.03012 1.20728 0.99617 0.85148 0.99346 1.24649 0.77913 0.89664 0.77804 1.90565 1.34993 1.79295 1.38769 1.86616 1.61547 1.24856 1.51563 1.23012 0.95386 0.80549 0.99437 1.21523 0.95143 0.92659 0.94041 1.20799 0.94127 1.39220 0.98802 0.92889 1.25444 1.01315 0.93943 0.95157 1.69980 1.27640 1.39164 1.20061 0.86745 0.81415 0.80376 0.78918 1.22176 1.21379 1.14474 1.23998 0.94674 0.84804 0.98211 1.89515 1.34099 1.51398 1.57392 1.24567 0.90584 0.94681 0.94036 1.20418 1.00129 0.94991 0.96303 1.21899 1.02781 0.93683 0.99600 1.22303 0.99431 1.00755 0.93754 1.20592 1.02330 0.93214 0.96166 1.21568 1.00246 0.96801 0.94895 0.92226 0.88320 0.91244 0.94137 0.91232 0.92482 0.89479 0.89030 0.89568 0.88962 0.90980 0.92916 0.86433 0.84970 0.88425 0.88397 0.92532 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 7.72 71.98 0.56 -2.81 16 2 C -0.05 -1.42 0.73 -52.79 -0.04 -1.46 16 3 C 0.45 17.98 6.55 71.23 0.47 18.45 16 4 O -0.55 -23.56 15.62 21.96 0.34 -23.21 16 5 O -0.33 -14.54 9.61 -51.37 -0.49 -15.03 16 6 C 0.09 4.01 4.23 71.98 0.30 4.32 16 7 C -0.03 -1.46 0.49 -52.23 -0.03 -1.48 16 8 C -0.49 -26.09 8.65 25.60 0.22 -25.87 16 9 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 10 C 0.04 2.26 5.44 84.66 0.46 2.72 16 11 N -0.93 -55.23 13.96 21.45 0.30 -54.94 16 12 Si 0.90 42.87 24.01 68.60 1.65 44.52 16 13 H -0.29 -14.68 7.00 99.48 0.70 -13.99 16 14 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 15 H -0.22 -9.34 4.53 99.48 0.45 -8.89 16 16 C 0.06 2.32 8.36 72.29 0.60 2.93 16 17 O -0.40 -16.32 12.38 -148.98 -1.84 -18.17 16 18 C 0.04 1.55 6.93 72.30 0.50 2.05 16 19 C -0.08 -2.52 4.87 29.66 0.14 -2.37 16 20 C -0.16 -3.73 9.41 27.04 0.25 -3.48 16 21 C -0.14 -2.58 9.16 27.04 0.25 -2.34 16 22 C -0.09 -1.44 5.48 29.65 0.16 -1.28 16 23 C -0.10 -2.41 4.28 30.73 0.13 -2.28 16 24 H 0.06 1.68 8.03 -2.39 -0.02 1.66 16 25 H 0.10 1.92 5.71 -2.39 -0.01 1.90 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.92 3.61 -2.39 -0.01 1.91 16 28 H 0.07 2.93 7.91 -2.39 -0.02 2.91 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.09 3.27 8.09 -2.39 -0.02 3.25 16 31 H 0.09 3.25 8.10 -2.39 -0.02 3.23 16 32 H 0.09 3.30 6.40 -2.39 -0.02 3.29 16 33 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 34 H 0.07 2.52 8.12 -2.39 -0.02 2.50 16 35 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.13 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.10 1.32 6.92 -2.39 -0.02 1.31 16 40 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 41 H 0.07 1.84 7.99 -2.39 -0.02 1.82 16 Total: -1.00 -65.23 320.46 4.69 -60.54 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.75 Total: 19.19 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 3.99 Total: -12.91 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.30 Total: -54.94 kcal Atomic # 8 Polarization: -54.42 SS G_CDS: -2.00 Total: -56.41 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.65 Total: 44.52 kcal Total: -65.23 4.69 -60.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123060157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.635 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds