Wall clock time and date at job start Tue Mar 31 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46891 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.47087 * 60.00182 * 3 2 1 7 7 C 1.37876 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00362 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46983 * 299.99821 * 9 7 2 11 11 O 1.45193 * 109.47501 * 180.02562 * 9 7 2 12 12 C 1.34230 * 117.00317 * 149.99858 * 11 9 7 13 13 O 1.20828 * 120.00017 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00114 * 179.97438 * 12 11 9 15 15 C 1.54057 * 112.65199 * 300.00885 * 14 12 11 16 16 C 1.54898 * 104.08904 * 261.97588 * 15 14 12 17 17 C 1.54800 * 102.73866 * 321.33054 * 16 15 14 18 18 C 1.54316 * 104.51622 * 37.60796 * 17 16 15 19 19 H 1.09003 * 111.87754 * 99.58136 * 18 17 16 20 20 O 1.43825 * 108.56232 * 222.86096 * 18 17 16 21 21 C 1.44300 * 107.21659 * 140.27736 * 20 18 17 22 22 C 1.54608 * 111.93780 * 63.39506 * 14 12 11 23 23 C 1.52998 * 109.47257 * 59.99664 * 9 7 2 24 24 C 1.53005 * 117.50034 * 248.62795 * 23 9 7 25 25 C 1.52997 * 117.50258 * 180.02562 * 23 9 7 26 26 H 0.96999 * 119.99629 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.50921 * 20.63407 * 15 14 12 28 28 H 1.09007 * 110.50196 * 143.32655 * 15 14 12 29 29 H 1.09000 * 110.75342 * 79.64481 * 16 15 14 30 30 H 1.09000 * 110.75802 * 203.01951 * 16 15 14 31 31 H 1.08999 * 110.43117 * 278.85231 * 17 16 15 32 32 H 1.09000 * 110.42653 * 156.36786 * 17 16 15 33 33 H 1.08999 * 110.61726 * 78.57394 * 21 20 18 34 34 H 1.09001 * 110.61677 * 201.56283 * 21 20 18 35 35 H 1.08996 * 110.91440 * 341.46242 * 22 14 12 36 36 H 1.09003 * 110.93898 * 217.85967 * 22 14 12 37 37 H 1.09002 * 115.55258 * 34.33192 * 23 9 7 38 38 H 1.09000 * 117.49938 * 359.97438 * 24 23 9 39 39 H 1.08998 * 117.49839 * 145.01607 * 24 23 9 40 40 H 1.08999 * 117.50293 * 214.97891 * 25 23 9 41 41 H 1.09005 * 117.49530 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8027 -4.7388 0.6000 13 8 0.7079 -4.8085 1.1063 14 6 2.7285 -5.9273 0.6401 15 6 3.1172 -6.4243 -0.7653 16 6 2.1563 -7.6112 -1.0246 17 6 2.0817 -8.2989 0.3602 18 6 2.0926 -7.1336 1.3718 19 1 1.0908 -6.8979 1.7309 20 8 2.9705 -7.4782 2.4577 21 6 3.6976 -6.2840 2.8147 22 6 4.0146 -5.6307 1.4454 23 6 0.3718 -2.5805 -1.2490 24 6 -1.1441 -2.5157 -1.0516 25 6 -0.4786 -3.8389 -1.4338 26 1 -0.4849 0.8401 -0.0004 27 1 2.9620 -5.6386 -1.5047 28 1 4.1535 -6.7623 -0.7777 29 1 1.1737 -7.2527 -1.3314 30 1 2.5717 -8.2888 -1.7705 31 1 2.9478 -8.9428 0.5124 32 1 1.1593 -8.8726 0.4509 33 1 3.0772 -5.6236 3.4206 34 1 4.6176 -6.5378 3.3412 35 1 4.1675 -4.5569 1.5528 36 1 4.8817 -6.1008 0.9816 37 1 0.7834 -2.1150 -2.1446 38 1 -1.5150 -2.4156 -0.0316 39 1 -1.7300 -2.0074 -1.8174 40 1 -0.6267 -4.2014 -2.4510 41 1 -0.4120 -4.6087 -0.6649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123367356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:45 Heat of formation + Delta-G solvation = -115.139588 kcal Electronic energy + Delta-G solvation = -23488.333406 eV Core-core repulsion = 20140.692096 eV Total energy + Delta-G solvation = -3347.641309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.89527 -38.92164 -36.37048 -35.38630 -34.94993 -32.69311 -32.04404 -28.16803 -27.75546 -27.20411 -23.63285 -22.55873 -21.92447 -21.25880 -20.78041 -19.54291 -18.90288 -17.37865 -16.45427 -16.36315 -16.09947 -15.32664 -15.00252 -14.78407 -14.38039 -14.28851 -13.85811 -13.56576 -12.94428 -12.84868 -12.29084 -12.15305 -11.70605 -11.50120 -11.40570 -11.28186 -11.07891 -11.00769 -10.98496 -10.86433 -10.81806 -10.54445 -10.41138 -10.29786 -9.85542 -9.70801 -9.49787 -9.35319 -9.05169 -8.68318 -8.46464 -6.18558 -4.26690 2.86556 3.21469 3.28183 3.31600 3.47793 3.79797 4.30446 4.39937 4.57206 4.82857 4.99911 5.01588 5.12812 5.14042 5.19596 5.32319 5.45222 5.56488 5.60702 5.69889 5.74213 5.87453 5.91748 5.93778 5.99776 6.00879 6.12052 6.14463 6.18701 6.31266 6.36286 6.52640 6.64928 6.94431 6.97806 7.12832 7.23574 7.36766 7.59008 7.81890 8.07368 8.58708 8.85624 9.38239 10.88223 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.005671 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.160355 B = 4936.629781 C = 5577.573260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.248 3.752 10 H 0.047 0.953 11 O -0.346 6.346 12 C 0.475 3.525 13 O -0.515 6.515 14 C -0.092 4.092 15 C -0.105 4.105 16 C -0.126 4.126 17 C -0.121 4.121 18 C 0.085 3.915 19 H 0.099 0.901 20 O -0.374 6.374 21 C 0.045 3.955 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.229 4.229 26 H 0.264 0.736 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 -12.507 -0.511 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.065 0.935 11 O -0.262 6.262 12 C 0.318 3.682 13 O -0.405 6.405 14 C -0.093 4.093 15 C -0.142 4.142 16 C -0.164 4.164 17 C -0.159 4.159 18 C 0.028 3.972 19 H 0.117 0.883 20 O -0.293 6.293 21 C -0.032 4.032 22 C -0.178 4.178 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.266 4.266 26 H 0.073 0.927 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.120 -12.543 -0.278 13.551 hybrid contribution 0.137 1.370 -0.143 1.384 sum 5.257 -11.173 -0.421 12.355 Atomic orbital electron populations 1.70057 1.05760 1.26925 1.48081 1.24883 0.95026 0.99086 0.94540 0.86317 0.80018 0.82659 0.77716 1.19524 1.20780 1.20798 1.20933 0.93821 0.88344 1.53460 0.91268 1.20234 0.86138 0.80426 0.93592 0.93502 1.86470 1.49128 1.21840 1.68728 1.22624 0.85857 0.84655 0.75112 1.90561 1.22515 1.83283 1.44134 1.22203 0.95276 0.92575 0.99294 1.22407 0.99835 0.98259 0.93738 1.22569 1.00166 0.96914 0.96728 1.22515 1.02841 0.96966 0.93568 1.23533 0.94861 0.92149 0.86705 0.88322 1.88828 1.56288 1.32088 1.52122 1.23602 0.96430 0.86858 0.96270 1.23269 0.95859 1.03397 0.95322 1.22588 0.92917 0.97393 1.00435 1.22348 0.95534 0.96783 1.01413 1.23261 1.09477 0.93028 1.00822 0.92651 0.89849 0.90073 0.90961 0.90731 0.90227 0.90886 0.91960 0.88676 0.88845 0.89206 0.89342 0.89368 0.90760 0.91022 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 11.44 55.43 0.63 -23.32 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 3 Si 0.91 20.67 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.39 8.88 -34.44 -0.31 -14.70 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.25 6.42 2.25 -27.88 -0.06 6.35 16 10 H 0.05 1.36 6.91 -51.93 -0.36 1.00 16 11 O -0.35 -7.93 9.66 -39.26 -0.38 -8.31 16 12 C 0.47 9.63 5.85 36.01 0.21 9.84 16 13 O -0.51 -11.67 12.52 -18.75 -0.23 -11.90 16 14 C -0.09 -1.43 0.83 -153.34 -0.13 -1.56 16 15 C -0.10 -1.38 5.99 -25.18 -0.15 -1.53 16 16 C -0.13 -1.47 6.90 -24.78 -0.17 -1.64 16 17 C -0.12 -1.46 6.53 -25.09 -0.16 -1.62 16 18 C 0.09 1.27 3.91 -25.12 -0.10 1.17 16 19 H 0.10 1.67 6.74 -51.93 -0.35 1.32 16 20 O -0.37 -5.54 11.03 -35.23 -0.39 -5.93 16 21 C 0.04 0.59 7.72 38.21 0.29 0.88 16 22 C -0.14 -1.91 6.29 -24.83 -0.16 -2.06 16 23 C -0.11 -2.76 4.48 -90.62 -0.41 -3.17 16 24 C -0.12 -2.83 9.05 -26.75 -0.24 -3.07 16 25 C -0.23 -4.87 9.80 -26.75 -0.26 -5.13 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 28 H 0.08 0.89 7.22 -51.92 -0.37 0.52 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.88 7.99 -51.93 -0.42 0.47 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.36 7.86 -51.93 -0.41 0.95 16 36 H 0.09 1.00 7.23 -51.93 -0.38 0.63 16 37 H 0.09 2.20 8.11 -51.93 -0.42 1.78 16 38 H 0.09 2.17 8.05 -51.93 -0.42 1.75 16 39 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 2.05 5.37 -51.93 -0.28 1.77 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -29.25 325.66 -8.53 -37.78 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.31 Total: 5.60 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.73 Total: -14.47 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.63 Total: -23.32 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.00 Total: -26.14 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.25 -8.53 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123367356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.364 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds