Wall clock time and date at job start Tue Mar 31 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48502 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46891 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.47087 * 60.00182 * 3 2 1 7 7 C 1.37876 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99755 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00362 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46983 * 299.99821 * 9 7 2 11 11 O 1.45193 * 109.47501 * 180.02562 * 9 7 2 12 12 C 1.34230 * 117.00317 * 149.99858 * 11 9 7 13 13 O 1.20828 * 120.00017 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00114 * 179.97438 * 12 11 9 15 15 C 1.54057 * 112.65199 * 300.00885 * 14 12 11 16 16 C 1.54898 * 104.08904 * 261.97588 * 15 14 12 17 17 C 1.54800 * 102.73866 * 321.33054 * 16 15 14 18 18 C 1.54316 * 104.51622 * 37.60796 * 17 16 15 19 19 H 1.09003 * 111.87754 * 99.58136 * 18 17 16 20 20 O 1.43825 * 108.56232 * 222.86096 * 18 17 16 21 21 C 1.44300 * 107.21659 * 140.27736 * 20 18 17 22 22 C 1.54608 * 111.93780 * 63.39506 * 14 12 11 23 23 C 1.52998 * 109.47257 * 59.99664 * 9 7 2 24 24 C 1.53005 * 117.50034 * 248.62795 * 23 9 7 25 25 C 1.52997 * 117.50258 * 180.02562 * 23 9 7 26 26 H 0.96999 * 119.99629 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.50921 * 20.63407 * 15 14 12 28 28 H 1.09007 * 110.50196 * 143.32655 * 15 14 12 29 29 H 1.09000 * 110.75342 * 79.64481 * 16 15 14 30 30 H 1.09000 * 110.75802 * 203.01951 * 16 15 14 31 31 H 1.08999 * 110.43117 * 278.85231 * 17 16 15 32 32 H 1.09000 * 110.42653 * 156.36786 * 17 16 15 33 33 H 1.08999 * 110.61726 * 78.57394 * 21 20 18 34 34 H 1.09001 * 110.61677 * 201.56283 * 21 20 18 35 35 H 1.08996 * 110.91440 * 341.46242 * 22 14 12 36 36 H 1.09003 * 110.93898 * 217.85967 * 22 14 12 37 37 H 1.09002 * 115.55258 * 34.33192 * 23 9 7 38 38 H 1.09000 * 117.49938 * 359.97438 * 24 23 9 39 39 H 1.08998 * 117.49839 * 145.01607 * 24 23 9 40 40 H 1.08999 * 117.50293 * 214.97891 * 25 23 9 41 41 H 1.09005 * 117.49530 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 8 2.1945 -3.6028 0.0018 12 6 1.8027 -4.7388 0.6000 13 8 0.7079 -4.8085 1.1063 14 6 2.7285 -5.9273 0.6401 15 6 3.1172 -6.4243 -0.7653 16 6 2.1563 -7.6112 -1.0246 17 6 2.0817 -8.2989 0.3602 18 6 2.0926 -7.1336 1.3718 19 1 1.0908 -6.8979 1.7309 20 8 2.9705 -7.4782 2.4577 21 6 3.6976 -6.2840 2.8147 22 6 4.0146 -5.6307 1.4454 23 6 0.3718 -2.5805 -1.2490 24 6 -1.1441 -2.5157 -1.0516 25 6 -0.4786 -3.8389 -1.4338 26 1 -0.4849 0.8401 -0.0004 27 1 2.9620 -5.6386 -1.5047 28 1 4.1535 -6.7623 -0.7777 29 1 1.1737 -7.2527 -1.3314 30 1 2.5717 -8.2888 -1.7705 31 1 2.9478 -8.9428 0.5124 32 1 1.1593 -8.8726 0.4509 33 1 3.0772 -5.6236 3.4206 34 1 4.6176 -6.5378 3.3412 35 1 4.1675 -4.5569 1.5528 36 1 4.8817 -6.1008 0.9816 37 1 0.7834 -2.1150 -2.1446 38 1 -1.5150 -2.4156 -0.0316 39 1 -1.7300 -2.0074 -1.8174 40 1 -0.6267 -4.2014 -2.4510 41 1 -0.4120 -4.6087 -0.6649 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123367356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:45 Heat of formation + Delta-G solvation = -130.935401 kcal Electronic energy + Delta-G solvation = -23489.018364 eV Core-core repulsion = 20140.692096 eV Total energy + Delta-G solvation = -3348.326267 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.26735 -40.46599 -38.17287 -36.76949 -36.47674 -34.74174 -33.18095 -30.02164 -28.91866 -28.38545 -25.53532 -23.98852 -23.23450 -23.06089 -21.83833 -21.30290 -20.44161 -18.99836 -18.23295 -18.01994 -17.39881 -16.79070 -16.67844 -16.22869 -15.90327 -15.63972 -15.28814 -14.73175 -14.59024 -14.45845 -13.70940 -13.47101 -13.25683 -13.12857 -13.03577 -12.84816 -12.63382 -12.41249 -12.31219 -12.19270 -12.05254 -11.97511 -11.84390 -11.76666 -11.58518 -11.38584 -11.17050 -10.95991 -10.65908 -10.63551 -10.46525 -8.24258 -6.41466 1.24909 1.40781 1.41203 1.53873 1.87154 2.39639 2.68431 3.03275 3.17703 3.27969 3.49232 3.66269 3.93310 3.96964 4.07038 4.14913 4.17898 4.27339 4.30231 4.38513 4.40313 4.53582 4.64884 4.71959 4.75431 4.76865 4.85279 4.93299 4.94085 5.02973 5.07872 5.12191 5.17127 5.22150 5.33335 5.38111 5.45773 5.53598 5.80858 5.83145 6.10476 6.61678 6.95146 7.28608 8.82304 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.005671 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.160355 B = 4936.629781 C = 5577.573260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.255 3.745 10 H 0.003 0.997 11 O -0.353 6.353 12 C 0.469 3.531 13 O -0.546 6.546 14 C -0.094 4.094 15 C -0.103 4.103 16 C -0.121 4.121 17 C -0.113 4.113 18 C 0.081 3.919 19 H 0.067 0.933 20 O -0.378 6.378 21 C 0.042 3.958 22 C -0.138 4.138 23 C -0.130 4.130 24 C -0.124 4.124 25 C -0.198 4.198 26 H 0.267 0.733 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.395 -13.762 -1.671 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.083 0.917 9 C 0.202 3.798 10 H 0.021 0.979 11 O -0.269 6.269 12 C 0.314 3.686 13 O -0.437 6.437 14 C -0.096 4.096 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.150 4.150 18 C 0.023 3.977 19 H 0.085 0.915 20 O -0.297 6.297 21 C -0.034 4.034 22 C -0.175 4.175 23 C -0.149 4.149 24 C -0.162 4.162 25 C -0.235 4.235 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.074 0.926 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.918 -13.819 -1.436 15.520 hybrid contribution -0.457 1.737 0.306 1.822 sum 6.461 -12.082 -1.131 13.748 Atomic orbital electron populations 1.70171 1.07060 1.27919 1.48003 1.25725 0.95931 1.02331 0.93710 0.85270 0.78874 0.78125 0.77938 1.18906 1.19868 1.20371 1.21195 0.93797 0.89601 1.54605 0.91732 1.19849 0.86156 0.81281 0.92523 0.97942 1.86460 1.48588 1.22314 1.69507 1.23676 0.86359 0.84879 0.73661 1.90542 1.24288 1.83689 1.45208 1.22374 0.95084 0.90317 1.01803 1.22499 1.02039 0.98297 0.91165 1.22580 0.99204 0.96767 0.97312 1.22509 1.04174 0.95889 0.92447 1.23520 0.93430 0.93285 0.87429 0.91485 1.88824 1.56218 1.32494 1.52165 1.23741 0.97279 0.86226 0.96169 1.23351 0.95930 1.02810 0.95404 1.22397 0.93231 0.99927 0.99362 1.22268 0.94907 0.98446 1.00538 1.23237 1.06359 0.91627 1.02236 0.92384 0.91469 0.86855 0.92584 0.87443 0.88317 0.90088 0.94042 0.85144 0.90502 0.85684 0.90077 0.91914 0.89166 0.87662 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.31 11.44 21.45 0.25 -50.06 16 2 C 0.03 1.37 5.30 84.65 0.45 1.82 16 3 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -31.20 8.88 25.60 0.23 -30.97 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.25 13.79 2.25 29.85 0.07 13.86 16 10 H 0.00 0.17 6.91 -2.39 -0.02 0.16 16 11 O -0.35 -16.80 9.66 -51.41 -0.50 -17.30 16 12 C 0.47 19.76 5.85 71.24 0.42 20.17 16 13 O -0.55 -26.20 12.52 21.96 0.28 -25.93 16 14 C -0.09 -2.88 0.83 -51.42 -0.04 -2.92 16 15 C -0.10 -2.45 5.99 31.60 0.19 -2.26 16 16 C -0.12 -2.49 6.90 31.86 0.22 -2.27 16 17 C -0.11 -2.42 6.53 31.65 0.21 -2.21 16 18 C 0.08 2.37 3.91 31.64 0.12 2.50 16 19 H 0.07 2.37 6.74 -2.39 -0.02 2.36 16 20 O -0.38 -10.61 11.03 -148.98 -1.64 -12.26 16 21 C 0.04 1.05 7.72 72.66 0.56 1.61 16 22 C -0.14 -3.52 6.29 31.82 0.20 -3.32 16 23 C -0.13 -6.46 4.48 -10.79 -0.05 -6.51 16 24 C -0.12 -5.83 9.05 30.58 0.28 -5.55 16 25 C -0.20 -8.42 9.80 30.58 0.30 -8.12 16 26 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.07 1.85 7.79 -2.39 -0.02 1.83 16 28 H 0.11 2.00 7.22 -2.38 -0.02 1.98 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.79 7.99 -2.39 -0.02 1.77 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.13 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.08 2.23 7.86 -2.39 -0.02 2.21 16 36 H 0.12 2.33 7.23 -2.39 -0.02 2.31 16 37 H 0.08 4.11 8.11 -2.39 -0.02 4.09 16 38 H 0.06 3.24 8.05 -2.39 -0.02 3.22 16 39 H 0.09 3.88 8.14 -2.39 -0.02 3.86 16 40 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 41 H 0.08 3.74 5.37 -2.38 -0.01 3.73 16 Total: -1.00 -66.16 325.66 4.57 -61.59 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 1.02 Total: 23.50 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.15 Total: -24.19 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.25 Total: -50.06 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.86 Total: -55.48 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.16 4.57 -61.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123367356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.344 kcal (2) G-P(sol) polarization free energy of solvation -66.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds