Wall clock time and date at job start Tue Mar 31 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.53002 * 109.47343 * 59.99600 * 3 2 1 5 5 C 1.52997 * 109.46975 * 299.99591 * 3 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 3 2 1 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 3 2 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 3 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 3 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47215 * 30.00423 * 10 9 7 12 12 C 1.50703 * 109.47248 * 269.99781 * 10 9 7 13 13 H 1.07996 * 119.99796 * 119.99965 * 12 10 9 14 14 C 1.37877 * 120.00242 * 300.00085 * 12 10 9 15 15 N 1.31518 * 119.99917 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47258 * 90.00143 * 16 14 12 18 18 H 1.48494 * 109.47018 * 210.00338 * 16 14 12 19 19 H 1.48500 * 109.46935 * 329.99862 * 16 14 12 20 20 C 1.50703 * 109.47160 * 150.00217 * 10 9 7 21 21 C 1.34515 * 125.78932 * 219.71848 * 20 10 9 22 22 C 1.41381 * 106.84254 * 179.88610 * 21 20 10 23 23 C 1.34517 * 106.84052 * 0.37199 * 22 21 20 24 24 O 1.34301 * 125.79356 * 40.02251 * 20 10 9 25 25 H 1.08998 * 109.47844 * 299.99997 * 1 2 3 26 26 H 1.09001 * 109.47248 * 60.00689 * 1 2 3 27 27 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47056 * 239.99654 * 2 1 3 29 29 H 1.08996 * 109.46698 * 119.99770 * 2 1 3 30 30 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47312 * 299.99943 * 4 3 2 32 32 H 1.09004 * 109.46930 * 59.99999 * 4 3 2 33 33 H 1.08998 * 109.47624 * 299.99919 * 5 3 2 34 34 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 35 35 H 1.09002 * 109.47045 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 59.99979 * 6 3 2 37 37 H 1.09000 * 109.47611 * 300.00276 * 6 3 2 38 38 H 0.96989 * 119.99945 * 179.97438 * 15 14 12 39 39 H 1.07997 * 126.58027 * 0.02562 * 21 20 10 40 40 H 1.08001 * 126.58246 * 180.16285 * 22 21 20 41 41 H 1.07992 * 125.79192 * 179.75123 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1636 -1.2493 6 6 3.5699 1.4425 0.0006 7 6 4.0723 2.8634 0.0000 8 8 3.2871 3.7817 -0.0004 9 8 5.3919 3.1086 -0.0001 10 6 5.8036 4.5010 -0.0001 11 1 5.0532 5.1018 0.5138 12 6 5.9459 4.9828 -1.4210 13 1 5.3452 5.8078 -1.7742 14 6 6.8431 4.3702 -2.2700 15 7 7.5750 3.3658 -1.8398 16 14 7.0190 4.9669 -4.0314 17 1 8.0609 6.0231 -4.0945 18 1 7.4130 3.8303 -4.9020 19 1 5.7228 5.5215 -4.4979 20 6 7.1260 4.6339 0.7101 21 6 7.4741 5.6296 1.5449 22 6 8.7906 5.3564 1.9820 23 6 9.1714 4.2144 1.3817 24 8 8.1592 3.7814 0.6126 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8936 3.1914 1.2494 31 1 0.4399 2.1638 1.2492 32 1 1.8932 1.6500 2.1392 33 1 1.8934 1.6499 -2.1393 34 1 0.4400 2.1636 -1.2493 35 1 1.8937 3.1912 -1.2495 36 1 3.9336 0.9285 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 8.2058 2.9346 -2.4372 39 1 6.8641 6.4744 1.8287 40 1 9.3790 5.9522 2.6640 41 1 10.1287 3.7284 1.4982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123369860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:07 Heat of formation + Delta-G solvation = -82.136773 kcal Electronic energy + Delta-G solvation = -22916.166820 eV Core-core repulsion = 19569.956620 eV Total energy + Delta-G solvation = -3346.210200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29647 -39.68642 -37.36985 -35.15556 -32.92161 -31.82533 -30.76035 -29.82046 -27.77490 -26.92134 -26.43329 -24.02864 -22.97193 -20.72213 -19.93555 -19.41428 -18.26051 -17.06804 -16.52196 -16.18798 -15.27282 -14.92270 -14.75912 -14.57337 -14.56187 -14.39708 -13.56912 -13.28499 -12.85662 -12.55160 -12.07756 -12.00722 -11.75866 -11.67830 -11.50155 -11.48013 -11.43204 -11.25334 -11.00153 -10.88250 -10.72195 -10.58615 -10.28066 -10.26710 -10.22463 -9.80845 -9.12975 -8.94466 -8.80669 -8.72754 -7.34299 -6.21273 -4.42802 2.91949 3.19717 3.26762 3.30256 3.33449 3.57672 3.98081 4.25767 4.29363 4.94622 5.03605 5.04292 5.14714 5.41545 5.54053 5.61780 5.76985 5.85087 5.92509 5.93037 5.99175 6.00690 6.04473 6.10385 6.17123 6.21134 6.33678 6.38701 6.42108 6.47472 6.56254 6.80272 6.81933 6.88274 6.94058 7.22281 7.49688 7.64178 7.82886 7.90500 8.43596 8.61577 9.05507 9.31123 10.77847 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.005775 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.293158 B = 4847.404595 C = 5829.997601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.048 4.048 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.109 4.109 7 C 0.461 3.539 8 O -0.524 6.524 9 O -0.337 6.337 10 C 0.279 3.721 11 H 0.070 0.930 12 C -0.548 4.548 13 H 0.073 0.927 14 C 0.080 3.920 15 N -0.825 5.825 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.080 3.920 21 C -0.267 4.267 22 C -0.222 4.222 23 C -0.083 4.083 24 O -0.112 6.112 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -5.359 4.538 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.049 4.049 4 C -0.212 4.212 5 C -0.212 4.212 6 C -0.147 4.147 7 C 0.305 3.695 8 O -0.416 6.416 9 O -0.252 6.252 10 C 0.227 3.773 11 H 0.088 0.912 12 C -0.584 4.584 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.458 5.458 16 Si 0.722 3.278 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.194 1.194 20 C 0.026 3.974 21 C -0.286 4.286 22 C -0.242 4.242 23 C -0.152 4.152 24 O -0.003 6.003 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.083 -5.485 4.320 9.260 hybrid contribution 0.509 0.569 -0.900 1.180 sum -5.574 -4.917 3.420 8.182 Atomic orbital electron populations 1.21866 0.96013 1.00954 1.02199 1.21570 0.95921 0.95864 1.01727 1.20315 0.92501 0.94922 0.97120 1.22163 1.00434 1.02943 0.95633 1.22161 1.00203 1.03242 0.95638 1.21444 0.95582 0.92894 1.04732 1.23164 0.82226 0.91637 0.72449 1.90408 1.56690 1.47267 1.47227 1.86726 1.22877 1.34700 1.80885 1.18739 0.85103 0.77921 0.95547 0.91177 1.21246 1.23920 1.18808 0.94428 0.90875 1.25154 0.94375 0.94322 0.99205 1.70042 1.20828 1.19457 1.35513 0.86527 0.78876 0.78645 0.83767 1.20210 1.20770 1.19399 1.22856 0.90136 0.89969 0.94435 1.21190 0.98054 1.03240 1.06125 1.21492 0.97148 0.99516 1.06009 1.23817 0.94562 0.98728 0.98135 1.84474 1.19802 1.44353 1.51659 0.92469 0.92393 0.93331 0.92052 0.92153 0.89673 0.93034 0.93753 0.93590 0.93155 0.89406 0.88569 0.88985 0.92315 0.85001 0.85205 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.21 37.16 0.34 -1.24 16 2 C -0.11 -1.32 4.99 -26.73 -0.13 -1.46 16 3 C -0.05 -0.70 0.54 -154.51 -0.08 -0.78 16 4 C -0.15 -2.23 7.82 37.16 0.29 -1.93 16 5 C -0.16 -2.39 7.82 37.16 0.29 -2.10 16 6 C -0.11 -1.80 4.88 -27.88 -0.14 -1.94 16 7 C 0.46 9.90 7.34 36.01 0.26 10.17 16 8 O -0.52 -11.77 10.57 -18.75 -0.20 -11.97 16 9 O -0.34 -8.41 9.27 -41.26 -0.38 -8.79 16 10 C 0.28 7.19 2.58 -29.03 -0.07 7.11 16 11 H 0.07 1.76 7.15 -51.93 -0.37 1.39 16 12 C -0.55 -15.01 8.90 -34.44 -0.31 -15.31 16 13 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 14 C 0.08 2.16 5.24 -17.82 -0.09 2.06 16 15 N -0.83 -22.69 10.45 55.43 0.58 -22.11 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 C 0.08 1.99 5.68 -35.62 -0.20 1.79 16 21 C -0.27 -5.93 10.80 -39.70 -0.43 -6.36 16 22 C -0.22 -4.42 10.91 -39.70 -0.43 -4.86 16 23 C -0.08 -1.70 12.09 29.42 0.36 -1.35 16 24 O -0.11 -2.79 8.62 4.49 0.04 -2.75 16 25 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 26 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.46 5.52 -51.93 -0.29 1.17 16 31 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.68 6.43 -51.93 -0.33 0.34 16 35 H 0.09 1.63 5.52 -51.93 -0.29 1.35 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.18 2.93 8.06 -52.49 -0.42 2.50 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -29.70 329.76 -6.42 -36.12 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.05 Total: 4.94 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.35 Total: -16.20 kcal Atomic # 7 Polarization: -22.69 SS G_CDS: 0.58 Total: -22.11 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.54 Total: -23.51 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.70 -6.42 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.018 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds