Wall clock time and date at job start Tue Mar 31 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.53002 * 109.47343 * 59.99600 * 3 2 1 5 5 C 1.52997 * 109.46975 * 299.99591 * 3 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 3 2 1 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 3 2 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 3 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 3 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47215 * 30.00423 * 10 9 7 12 12 C 1.50703 * 109.47248 * 269.99781 * 10 9 7 13 13 H 1.07996 * 119.99796 * 119.99965 * 12 10 9 14 14 C 1.37877 * 120.00242 * 300.00085 * 12 10 9 15 15 N 1.31518 * 119.99917 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00119 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47258 * 90.00143 * 16 14 12 18 18 H 1.48494 * 109.47018 * 210.00338 * 16 14 12 19 19 H 1.48500 * 109.46935 * 329.99862 * 16 14 12 20 20 C 1.50703 * 109.47160 * 150.00217 * 10 9 7 21 21 C 1.34515 * 125.78932 * 219.71848 * 20 10 9 22 22 C 1.41381 * 106.84254 * 179.88610 * 21 20 10 23 23 C 1.34517 * 106.84052 * 0.37199 * 22 21 20 24 24 O 1.34301 * 125.79356 * 40.02251 * 20 10 9 25 25 H 1.08998 * 109.47844 * 299.99997 * 1 2 3 26 26 H 1.09001 * 109.47248 * 60.00689 * 1 2 3 27 27 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47056 * 239.99654 * 2 1 3 29 29 H 1.08996 * 109.46698 * 119.99770 * 2 1 3 30 30 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47312 * 299.99943 * 4 3 2 32 32 H 1.09004 * 109.46930 * 59.99999 * 4 3 2 33 33 H 1.08998 * 109.47624 * 299.99919 * 5 3 2 34 34 H 1.09000 * 109.47140 * 60.00388 * 5 3 2 35 35 H 1.09002 * 109.47045 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 59.99979 * 6 3 2 37 37 H 1.09000 * 109.47611 * 300.00276 * 6 3 2 38 38 H 0.96989 * 119.99945 * 179.97438 * 15 14 12 39 39 H 1.07997 * 126.58027 * 0.02562 * 21 20 10 40 40 H 1.08001 * 126.58246 * 180.16285 * 22 21 20 41 41 H 1.07992 * 125.79192 * 179.75123 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5300 2.1636 -1.2493 6 6 3.5699 1.4425 0.0006 7 6 4.0723 2.8634 0.0000 8 8 3.2871 3.7817 -0.0004 9 8 5.3919 3.1086 -0.0001 10 6 5.8036 4.5010 -0.0001 11 1 5.0532 5.1018 0.5138 12 6 5.9459 4.9828 -1.4210 13 1 5.3452 5.8078 -1.7742 14 6 6.8431 4.3702 -2.2700 15 7 7.5750 3.3658 -1.8398 16 14 7.0190 4.9669 -4.0314 17 1 8.0609 6.0231 -4.0945 18 1 7.4130 3.8303 -4.9020 19 1 5.7228 5.5215 -4.4979 20 6 7.1260 4.6339 0.7101 21 6 7.4741 5.6296 1.5449 22 6 8.7906 5.3564 1.9820 23 6 9.1714 4.2144 1.3817 24 8 8.1592 3.7814 0.6126 25 1 -0.3635 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8936 3.1914 1.2494 31 1 0.4399 2.1638 1.2492 32 1 1.8932 1.6500 2.1392 33 1 1.8934 1.6499 -2.1393 34 1 0.4400 2.1636 -1.2493 35 1 1.8937 3.1912 -1.2495 36 1 3.9336 0.9285 -0.8891 37 1 3.9330 0.9288 0.8908 38 1 8.2058 2.9346 -2.4372 39 1 6.8641 6.4744 1.8287 40 1 9.3790 5.9522 2.6640 41 1 10.1287 3.7284 1.4982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123369860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:06 Heat of formation + Delta-G solvation = -97.202474 kcal Electronic energy + Delta-G solvation = -22916.820118 eV Core-core repulsion = 19569.956620 eV Total energy + Delta-G solvation = -3346.863498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.03092 -41.30829 -38.77054 -36.86620 -34.90894 -33.56332 -32.03752 -31.42632 -29.11913 -28.28526 -28.13057 -25.41155 -24.52701 -22.39998 -21.55878 -21.17888 -19.47179 -18.95841 -18.21624 -17.91606 -17.07198 -16.68412 -16.38311 -16.24115 -15.72807 -15.65232 -15.11131 -14.75421 -14.28808 -14.07338 -13.56891 -13.45712 -13.35026 -13.15976 -13.05320 -13.00992 -12.88220 -12.69658 -12.66457 -12.40334 -11.99315 -11.89961 -11.84386 -11.77020 -11.39137 -11.30327 -10.95717 -10.81036 -10.55856 -10.48632 -9.08455 -8.22001 -6.51844 1.18570 1.35500 1.37030 1.46792 1.62671 1.91103 2.32060 2.34385 2.61656 3.08644 3.74362 3.88909 3.93230 4.20000 4.35793 4.40822 4.43545 4.48791 4.50480 4.64525 4.69577 4.76002 4.76639 4.89657 4.95083 5.12830 5.13647 5.14803 5.18199 5.23250 5.26688 5.29821 5.43220 5.44749 5.58497 5.62808 5.68488 5.81336 5.91408 6.16587 6.53425 6.74458 7.19367 7.33167 8.75875 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.017181 B = 0.005775 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.293158 B = 4847.404595 C = 5829.997601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.046 4.046 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.102 4.102 7 C 0.448 3.552 8 O -0.538 6.538 9 O -0.356 6.356 10 C 0.280 3.720 11 H 0.057 0.943 12 C -0.576 4.576 13 H 0.058 0.942 14 C 0.042 3.958 15 N -0.844 5.844 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.272 1.272 20 C 0.039 3.961 21 C -0.267 4.267 22 C -0.219 4.219 23 C -0.084 4.084 24 O -0.141 6.141 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.268 0.732 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.824 -6.550 4.958 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.046 4.046 4 C -0.208 4.208 5 C -0.210 4.210 6 C -0.140 4.140 7 C 0.293 3.707 8 O -0.431 6.431 9 O -0.272 6.272 10 C 0.227 3.773 11 H 0.075 0.925 12 C -0.612 4.612 13 H 0.076 0.924 14 C -0.166 4.166 15 N -0.477 5.477 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.197 1.197 19 H -0.197 1.197 20 C -0.014 4.014 21 C -0.287 4.287 22 C -0.238 4.238 23 C -0.152 4.152 24 O -0.034 6.034 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.187 0.813 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.856 -6.676 4.749 10.071 hybrid contribution 0.415 0.964 -0.930 1.402 sum -5.440 -5.712 3.820 8.765 Atomic orbital electron populations 1.21859 0.94772 1.02120 1.02146 1.21531 0.96916 0.93366 1.02682 1.20360 0.90753 0.96984 0.96482 1.22093 1.01531 1.00963 0.96215 1.22100 1.01432 1.00998 0.96443 1.21608 0.97193 0.89354 1.05827 1.24206 0.81101 0.93683 0.71676 1.90414 1.56649 1.48443 1.47565 1.86698 1.24908 1.33964 1.81589 1.18540 0.85702 0.78178 0.94867 0.92512 1.21379 1.24665 1.19168 0.96009 0.92390 1.25774 0.93925 0.94417 1.02505 1.70151 1.21046 1.20033 1.36498 0.85637 0.78601 0.78457 0.79537 1.19669 1.19680 1.19687 1.22797 0.90357 0.91534 0.96692 1.21580 0.99426 1.02624 1.05043 1.21900 0.96159 0.99607 1.06141 1.24745 0.94850 0.98997 0.96639 1.84407 1.20728 1.45201 1.53058 0.92262 0.92710 0.91604 0.91528 0.90829 0.93074 0.91269 0.92475 0.93440 0.91193 0.93229 0.88129 0.86927 0.92244 0.83749 0.81258 0.75944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.21 71.98 0.66 -2.03 16 2 C -0.11 -2.22 4.99 30.59 0.15 -2.07 16 3 C -0.05 -1.27 0.54 -52.18 -0.03 -1.29 16 4 C -0.15 -4.22 7.82 71.98 0.56 -3.66 16 5 C -0.15 -4.68 7.82 71.98 0.56 -4.11 16 6 C -0.10 -3.36 4.88 29.85 0.15 -3.21 16 7 C 0.45 19.96 7.34 71.24 0.52 20.49 16 8 O -0.54 -25.51 10.57 21.96 0.23 -25.28 16 9 O -0.36 -18.50 9.27 -49.39 -0.46 -18.95 16 10 C 0.28 15.08 2.58 29.10 0.08 15.16 16 11 H 0.06 3.06 7.15 -2.39 -0.02 3.05 16 12 C -0.58 -32.88 8.90 25.60 0.23 -32.65 16 13 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 14 C 0.04 2.32 5.24 84.65 0.44 2.76 16 15 N -0.84 -47.12 10.45 21.45 0.22 -46.89 16 16 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.04 1.99 5.68 24.83 0.14 2.14 16 21 C -0.27 -11.85 10.80 22.19 0.24 -11.61 16 22 C -0.22 -8.24 10.91 22.19 0.24 -7.99 16 23 C -0.08 -3.29 12.09 66.97 0.81 -2.48 16 24 O -0.14 -7.09 8.62 -1.28 -0.01 -7.10 16 25 H 0.06 1.03 6.43 -2.39 -0.02 1.01 16 26 H 0.05 1.00 6.43 -2.39 -0.02 0.99 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.79 5.52 -2.39 -0.01 1.78 16 31 H 0.07 1.66 6.43 -2.39 -0.02 1.64 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.82 6.43 -2.39 -0.02 1.80 16 35 H 0.05 1.91 5.52 -2.39 -0.01 1.90 16 36 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.27 14.13 8.31 -92.72 -0.77 13.36 16 39 H 0.14 5.82 8.06 -2.91 -0.02 5.79 16 40 H 0.17 4.90 8.06 -2.91 -0.02 4.87 16 41 H 0.22 6.45 8.06 -2.91 -0.02 6.43 16 Total: -1.00 -66.55 329.76 7.79 -58.76 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.02 Total: 24.68 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.76 Total: -30.56 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.22 Total: -46.89 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.24 Total: -51.33 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.55 7.79 -58.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.445 kcal (2) G-P(sol) polarization free energy of solvation -66.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds