Wall clock time and date at job start Tue Mar 31 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 C 1.52998 * 109.47005 * 59.99954 * 3 2 1 5 5 C 1.53004 * 109.46763 * 299.99808 * 3 2 1 6 6 C 1.52996 * 109.46952 * 180.02562 * 3 2 1 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 3 2 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 3 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 3 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08997 * 109.47182 * 30.00237 * 10 9 7 12 12 C 1.50706 * 109.47038 * 149.99875 * 10 9 7 13 13 H 1.08002 * 119.99636 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99798 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00508 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99737 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47155 * 60.00373 * 16 14 12 18 18 H 1.48496 * 109.47192 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47113 * 300.00264 * 16 14 12 20 20 C 1.50698 * 109.47225 * 269.99702 * 10 9 7 21 21 C 1.34518 * 125.78862 * 145.00195 * 20 10 9 22 22 C 1.41383 * 106.84147 * 180.02562 * 21 20 10 23 23 C 1.34516 * 106.83955 * 359.97438 * 22 21 20 24 24 O 1.34297 * 125.79183 * 324.69507 * 20 10 9 25 25 H 1.09008 * 109.47282 * 300.00004 * 1 2 3 26 26 H 1.08998 * 109.47408 * 60.00223 * 1 2 3 27 27 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47439 * 239.99718 * 2 1 3 29 29 H 1.08998 * 109.47408 * 119.99777 * 2 1 3 30 30 H 1.09005 * 109.46534 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47257 * 299.99409 * 4 3 2 32 32 H 1.08998 * 109.47182 * 60.00329 * 4 3 2 33 33 H 1.09000 * 109.47070 * 299.99939 * 5 3 2 34 34 H 1.08998 * 109.46770 * 60.00132 * 5 3 2 35 35 H 1.08996 * 109.46735 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47764 * 59.99520 * 6 3 2 37 37 H 1.09006 * 109.46938 * 299.99298 * 6 3 2 38 38 H 0.97003 * 120.00681 * 179.97438 * 15 14 12 39 39 H 1.07999 * 126.57450 * 0.03319 * 21 20 10 40 40 H 1.07999 * 126.57516 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.78830 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1637 -1.2493 6 6 3.5699 1.4426 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2870 3.7817 0.0004 9 8 5.3919 3.1086 -0.0060 10 6 5.8035 4.5011 -0.0113 11 1 5.0552 5.1032 0.5040 12 6 7.1288 4.6358 0.6935 13 1 7.6133 3.7622 1.1039 14 6 7.7230 5.8741 0.8134 15 7 7.1332 6.9378 0.3132 16 14 9.3661 6.0410 1.6864 17 1 10.3854 5.2205 0.9841 18 1 9.7871 7.4650 1.6811 19 1 9.2318 5.5702 3.0884 20 6 5.9403 4.9791 -1.4339 21 6 5.6516 6.2150 -1.8797 22 6 5.9239 6.2240 -3.2670 23 6 6.3632 4.9932 -3.5859 24 8 6.3765 4.2452 -2.4705 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8929 3.1916 1.2489 31 1 0.4399 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8933 1.6499 -2.1393 34 1 0.4399 2.1636 -1.2493 35 1 1.8928 3.1915 -1.2491 36 1 3.9330 0.9288 -0.8908 37 1 3.9336 0.9287 0.8892 38 1 7.5511 7.8091 0.3978 39 1 5.2827 7.0417 -1.2908 40 1 5.8024 7.0588 -3.9413 41 1 6.6595 4.6639 -4.5709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123369863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:10 Heat of formation + Delta-G solvation = -86.987662 kcal Electronic energy + Delta-G solvation = -22845.631698 eV Core-core repulsion = 19499.211148 eV Total energy + Delta-G solvation = -3346.420550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33544 -39.98006 -37.59303 -35.44908 -33.30274 -31.67458 -30.92212 -29.66682 -27.93751 -27.05035 -26.55436 -24.14098 -22.89718 -20.76410 -20.27557 -19.25071 -18.45145 -17.16669 -16.63983 -16.41300 -15.43271 -15.25239 -14.76688 -14.74411 -14.67904 -14.44195 -13.64806 -13.39158 -12.92510 -12.58954 -12.22310 -12.13679 -11.90872 -11.72766 -11.63249 -11.57241 -11.25312 -11.19511 -11.02443 -10.98360 -10.90420 -10.75877 -10.43616 -10.39233 -10.33047 -9.97506 -9.41163 -9.26022 -8.82186 -8.62855 -7.23551 -6.20510 -4.39870 2.88976 2.96316 3.23098 3.26482 3.28258 3.58117 3.97365 4.20044 4.28077 4.77686 4.90578 4.95187 5.07279 5.28880 5.40903 5.49882 5.72117 5.73890 5.76674 5.78796 5.88063 5.94422 5.99443 6.05760 6.07993 6.09583 6.24474 6.27887 6.34279 6.44001 6.64593 6.69996 6.84313 7.01712 7.20160 7.25801 7.45194 7.70859 7.74002 7.89399 8.38718 8.54663 8.81430 9.27294 10.76603 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.005196 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.759072 B = 5387.818309 C = 6201.135575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.049 4.049 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.108 4.108 7 C 0.454 3.546 8 O -0.509 6.509 9 O -0.351 6.351 10 C 0.299 3.701 11 H 0.078 0.922 12 C -0.531 4.531 13 H 0.076 0.924 14 C 0.070 3.930 15 N -0.868 5.868 16 Si 0.914 3.086 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.022 3.978 21 C -0.176 4.176 22 C -0.218 4.218 23 C -0.091 4.091 24 O -0.179 6.179 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.269 0.731 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -9.345 -2.359 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.049 4.049 4 C -0.214 4.214 5 C -0.213 4.213 6 C -0.146 4.146 7 C 0.298 3.702 8 O -0.399 6.399 9 O -0.267 6.267 10 C 0.246 3.754 11 H 0.096 0.904 12 C -0.568 4.568 13 H 0.095 0.905 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.740 3.260 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.197 1.197 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.238 4.238 23 C -0.158 4.158 24 O -0.076 6.076 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.648 -9.121 -2.356 12.788 hybrid contribution 1.042 0.648 0.094 1.231 sum -7.606 -8.473 -2.262 11.609 Atomic orbital electron populations 1.21870 0.95871 1.01085 1.02278 1.21567 0.96080 0.95581 1.01807 1.20338 0.92120 0.95224 0.97261 1.22174 1.00673 1.02935 0.95590 1.22171 1.00644 1.02928 0.95605 1.21468 0.96041 0.91983 1.05081 1.23474 0.81999 0.92216 0.72504 1.90487 1.56365 1.47233 1.45773 1.86549 1.23737 1.34449 1.81965 1.19144 0.97285 0.74247 0.84753 0.90448 1.20873 1.04354 0.94786 1.36770 0.90539 1.24931 0.98482 0.95121 0.95061 1.70014 1.38726 0.99164 1.42350 0.86298 0.82503 0.77239 0.79958 1.19873 1.20924 1.19731 1.23591 0.98576 0.91913 0.88794 1.21287 1.07477 0.97953 0.92798 1.21715 1.07666 0.97590 0.96837 1.23590 1.09722 0.92118 0.90372 1.83986 1.66633 1.40912 1.16029 0.92370 0.92386 0.93214 0.92026 0.91988 0.89669 0.92821 0.93468 0.93555 0.92821 0.89703 0.88404 0.88320 0.92113 0.83697 0.85212 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 37.16 0.34 -1.09 16 2 C -0.11 -1.16 4.99 -26.73 -0.13 -1.29 16 3 C -0.05 -0.64 0.54 -154.51 -0.08 -0.72 16 4 C -0.16 -2.13 7.82 37.16 0.29 -1.84 16 5 C -0.16 -2.18 7.82 37.16 0.29 -1.89 16 6 C -0.11 -1.57 4.88 -27.89 -0.14 -1.71 16 7 C 0.45 9.09 7.34 36.00 0.26 9.35 16 8 O -0.51 -11.01 10.57 -18.76 -0.20 -11.21 16 9 O -0.35 -8.25 9.84 -41.99 -0.41 -8.66 16 10 C 0.30 7.88 2.41 -29.03 -0.07 7.81 16 11 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 12 C -0.53 -14.63 8.89 -34.44 -0.31 -14.94 16 13 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 15 N -0.87 -23.84 10.47 55.43 0.58 -23.26 16 16 Si 0.91 20.86 29.54 -169.99 -5.02 15.83 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.02 0.58 5.67 -35.62 -0.20 0.37 16 21 C -0.18 -4.39 9.04 -39.70 -0.36 -4.75 16 22 C -0.22 -4.70 10.91 -39.70 -0.43 -5.14 16 23 C -0.09 -1.88 12.09 29.42 0.36 -1.52 16 24 O -0.18 -4.40 10.63 2.21 0.02 -4.38 16 25 H 0.06 0.54 6.43 -51.92 -0.33 0.21 16 26 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.42 5.52 -51.93 -0.29 1.14 16 31 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.08 1.46 5.52 -51.93 -0.29 1.17 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.15 3.73 7.49 -52.49 -0.39 3.34 16 40 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 329.92 15.07 4.97 4.97 Total: -1.00 -29.77 329.92 -6.35 -36.12 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.02 Total: 6.16 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -0.27 Total: -15.58 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.58 Total: -23.26 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.59 Total: -24.25 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.77 -6.35 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.865 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds