Wall clock time and date at job start Tue Mar 31 2020 01:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46953 * 2 1 4 4 C 1.52998 * 109.47005 * 59.99954 * 3 2 1 5 5 C 1.53004 * 109.46763 * 299.99808 * 3 2 1 6 6 C 1.52996 * 109.46952 * 180.02562 * 3 2 1 7 7 C 1.50696 * 109.47298 * 180.02562 * 6 3 2 8 8 O 1.20833 * 119.99655 * 359.97438 * 7 6 3 9 9 O 1.34222 * 120.00432 * 180.27351 * 7 6 3 10 10 C 1.45201 * 117.00137 * 179.71953 * 9 7 6 11 11 H 1.08997 * 109.47182 * 30.00237 * 10 9 7 12 12 C 1.50706 * 109.47038 * 149.99875 * 10 9 7 13 13 H 1.08002 * 119.99636 * 0.02562 * 12 10 9 14 14 C 1.37873 * 119.99798 * 179.97438 * 12 10 9 15 15 N 1.31508 * 120.00508 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99737 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47155 * 60.00373 * 16 14 12 18 18 H 1.48496 * 109.47192 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47113 * 300.00264 * 16 14 12 20 20 C 1.50698 * 109.47225 * 269.99702 * 10 9 7 21 21 C 1.34518 * 125.78862 * 145.00195 * 20 10 9 22 22 C 1.41383 * 106.84147 * 180.02562 * 21 20 10 23 23 C 1.34516 * 106.83955 * 359.97438 * 22 21 20 24 24 O 1.34297 * 125.79183 * 324.69507 * 20 10 9 25 25 H 1.09008 * 109.47282 * 300.00004 * 1 2 3 26 26 H 1.08998 * 109.47408 * 60.00223 * 1 2 3 27 27 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47439 * 239.99718 * 2 1 3 29 29 H 1.08998 * 109.47408 * 119.99777 * 2 1 3 30 30 H 1.09005 * 109.46534 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47257 * 299.99409 * 4 3 2 32 32 H 1.08998 * 109.47182 * 60.00329 * 4 3 2 33 33 H 1.09000 * 109.47070 * 299.99939 * 5 3 2 34 34 H 1.08998 * 109.46770 * 60.00132 * 5 3 2 35 35 H 1.08996 * 109.46735 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47764 * 59.99520 * 6 3 2 37 37 H 1.09006 * 109.46938 * 299.99298 * 6 3 2 38 38 H 0.97003 * 120.00681 * 179.97438 * 15 14 12 39 39 H 1.07999 * 126.57450 * 0.03319 * 21 20 10 40 40 H 1.07999 * 126.57516 * 179.97438 * 22 21 20 41 41 H 1.07999 * 125.78830 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 1.2492 5 6 1.5299 2.1637 -1.2493 6 6 3.5699 1.4426 -0.0006 7 6 4.0723 2.8633 0.0000 8 8 3.2870 3.7817 0.0004 9 8 5.3919 3.1086 -0.0060 10 6 5.8035 4.5011 -0.0113 11 1 5.0552 5.1032 0.5040 12 6 7.1288 4.6358 0.6935 13 1 7.6133 3.7622 1.1039 14 6 7.7230 5.8741 0.8134 15 7 7.1332 6.9378 0.3132 16 14 9.3661 6.0410 1.6864 17 1 10.3854 5.2205 0.9841 18 1 9.7871 7.4650 1.6811 19 1 9.2318 5.5702 3.0884 20 6 5.9403 4.9791 -1.4339 21 6 5.6516 6.2150 -1.8797 22 6 5.9239 6.2240 -3.2670 23 6 6.3632 4.9932 -3.5859 24 8 6.3765 4.2452 -2.4705 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8929 3.1916 1.2489 31 1 0.4399 2.1638 1.2492 32 1 1.8933 1.6500 2.1392 33 1 1.8933 1.6499 -2.1393 34 1 0.4399 2.1636 -1.2493 35 1 1.8928 3.1915 -1.2491 36 1 3.9330 0.9288 -0.8908 37 1 3.9336 0.9287 0.8892 38 1 7.5511 7.8091 0.3978 39 1 5.2827 7.0417 -1.2908 40 1 5.8024 7.0588 -3.9413 41 1 6.6595 4.6639 -4.5709 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123369863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:10 Heat of formation + Delta-G solvation = -102.568934 kcal Electronic energy + Delta-G solvation = -22846.307353 eV Core-core repulsion = 19499.211148 eV Total energy + Delta-G solvation = -3347.096205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.17106 -41.52825 -38.90090 -37.07167 -35.30411 -33.52134 -32.08016 -31.35355 -29.21930 -28.42955 -28.16699 -25.42109 -24.50348 -22.47135 -21.99639 -21.02923 -19.56718 -19.00401 -18.40847 -18.10744 -17.18062 -16.91954 -16.52070 -16.26286 -15.77068 -15.68167 -15.11733 -14.79098 -14.38582 -14.05535 -13.85305 -13.50447 -13.48866 -13.16975 -13.09264 -13.00108 -12.84108 -12.72486 -12.70273 -12.47134 -12.18953 -11.93329 -11.88511 -11.79205 -11.43084 -11.32434 -11.28556 -10.81031 -10.74513 -10.50400 -9.10599 -8.22683 -6.53004 1.11412 1.37578 1.39415 1.43635 1.50351 1.93104 2.13751 2.40449 2.44419 3.01257 3.66883 3.83141 3.90201 4.14853 4.28628 4.40831 4.43012 4.46436 4.59183 4.62248 4.69265 4.72348 4.73634 4.88735 4.92260 5.10252 5.11257 5.17028 5.18220 5.25526 5.28952 5.32893 5.40279 5.46096 5.50493 5.59676 5.65291 5.71979 5.88617 6.07072 6.48204 6.61609 7.01041 7.20539 8.72270 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.005196 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.759072 B = 5387.818309 C = 6201.135575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.047 4.047 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.101 4.101 7 C 0.443 3.557 8 O -0.530 6.530 9 O -0.364 6.364 10 C 0.303 3.697 11 H 0.041 0.959 12 C -0.558 4.558 13 H 0.073 0.927 14 C 0.025 3.975 15 N -0.890 5.890 16 Si 0.979 3.021 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.007 4.007 21 C -0.191 4.191 22 C -0.229 4.229 23 C -0.072 4.072 24 O -0.196 6.196 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.044 0.956 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.270 0.730 39 H 0.125 0.875 40 H 0.164 0.836 41 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.248 -11.215 -3.353 14.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.047 4.047 4 C -0.212 4.212 5 C -0.211 4.211 6 C -0.138 4.138 7 C 0.288 3.712 8 O -0.420 6.420 9 O -0.281 6.281 10 C 0.249 3.751 11 H 0.059 0.941 12 C -0.595 4.595 13 H 0.091 0.909 14 C -0.178 4.178 15 N -0.525 5.525 16 Si 0.802 3.198 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.057 4.057 21 C -0.211 4.211 22 C -0.248 4.248 23 C -0.138 4.138 24 O -0.093 6.093 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.182 0.818 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.357 -11.000 -3.349 14.215 hybrid contribution 0.836 1.248 0.334 1.539 sum -7.521 -9.752 -3.015 12.679 Atomic orbital electron populations 1.21872 0.95055 1.02129 1.02044 1.21528 0.96706 0.93055 1.03058 1.20384 0.90855 0.97194 0.96242 1.22122 1.01614 1.00811 0.96639 1.22112 1.01597 1.00715 0.96666 1.21694 0.97101 0.88017 1.06975 1.24680 0.80596 0.94431 0.71492 1.90500 1.56427 1.48671 1.46447 1.86536 1.26102 1.32747 1.82695 1.18676 0.95903 0.75256 0.85244 0.94138 1.21146 1.05166 0.95224 1.37933 0.90907 1.25808 1.01939 0.94560 0.95502 1.70153 1.39991 0.99445 1.42887 0.85289 0.77928 0.77449 0.79112 1.19488 1.20157 1.18702 1.23391 1.00660 0.92487 0.89162 1.21342 1.07748 0.97158 0.94811 1.22056 1.07879 0.99391 0.95472 1.24664 1.06805 0.91333 0.90992 1.83957 1.66963 1.41637 1.16784 0.92593 0.92673 0.91552 0.90842 0.90699 0.93530 0.91356 0.92334 0.92617 0.91330 0.93678 0.86455 0.86100 0.92041 0.85735 0.81816 0.74446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.21 71.98 0.66 -1.76 16 2 C -0.11 -1.85 4.99 30.59 0.15 -1.70 16 3 C -0.05 -1.15 0.54 -52.18 -0.03 -1.18 16 4 C -0.15 -4.17 7.82 71.98 0.56 -3.61 16 5 C -0.15 -4.21 7.82 71.98 0.56 -3.65 16 6 C -0.10 -2.83 4.88 29.85 0.15 -2.69 16 7 C 0.44 18.39 7.34 71.23 0.52 18.91 16 8 O -0.53 -24.51 10.57 21.94 0.23 -24.28 16 9 O -0.36 -17.87 9.84 -48.71 -0.48 -18.35 16 10 C 0.30 16.88 2.41 29.10 0.07 16.95 16 11 H 0.04 2.49 7.16 -2.39 -0.02 2.48 16 12 C -0.56 -31.93 8.89 25.60 0.23 -31.70 16 13 H 0.07 4.08 7.81 -2.91 -0.02 4.05 16 14 C 0.03 1.39 5.30 84.65 0.45 1.84 16 15 N -0.89 -50.52 10.47 21.44 0.22 -50.29 16 16 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 20 C -0.01 -0.35 5.67 24.83 0.14 -0.21 16 21 C -0.19 -9.85 9.04 22.19 0.20 -9.65 16 22 C -0.23 -9.59 10.91 22.19 0.24 -9.35 16 23 C -0.07 -2.81 12.09 66.97 0.81 -2.00 16 24 O -0.20 -9.63 10.63 0.91 0.01 -9.62 16 25 H 0.06 0.90 6.43 -2.38 -0.02 0.89 16 26 H 0.05 0.90 6.43 -2.39 -0.02 0.88 16 27 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.05 1.63 5.52 -2.38 -0.01 1.61 16 31 H 0.07 1.60 6.43 -2.39 -0.02 1.58 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.63 6.43 -2.39 -0.02 1.61 16 35 H 0.04 1.61 5.52 -2.39 -0.01 1.59 16 36 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.12 6.82 7.49 -2.91 -0.02 6.80 16 40 H 0.16 5.58 8.06 -2.91 -0.02 5.56 16 41 H 0.24 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -68.65 329.92 7.75 -60.90 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 1.02 Total: 26.31 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.72 Total: -29.80 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.22 Total: -50.29 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.24 Total: -52.25 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.65 7.75 -60.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123369863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.670 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds