Wall clock time and date at job start Tue Mar 31 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46668 * 2 1 4 4 C 1.53002 * 109.46976 * 119.99637 * 2 1 3 5 5 C 1.52996 * 109.46891 * 65.00546 * 4 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46906 * 60.00442 * 16 14 12 18 18 H 1.48500 * 109.47270 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47589 * 300.00565 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 1.09003 * 109.46567 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47183 * 300.00070 * 1 2 3 27 27 H 1.09000 * 109.47144 * 60.00304 * 1 2 3 28 28 H 1.09002 * 109.47308 * 240.00119 * 2 1 3 29 29 H 1.09009 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47585 * 299.99780 * 3 2 1 31 31 H 1.09006 * 109.47638 * 60.00007 * 3 2 1 32 32 H 1.08992 * 109.47056 * 305.00199 * 4 2 1 33 33 H 1.08996 * 109.46698 * 185.00315 * 4 2 1 34 34 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 35 35 H 1.09004 * 109.47108 * 299.99708 * 5 4 2 36 36 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 37 37 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 38 38 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 39 39 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 40 40 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 41 41 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 6 2.1458 -2.9167 2.4370 7 6 1.7467 -4.3687 2.3769 8 8 1.1188 -4.7840 1.4319 9 8 2.0887 -5.2005 3.3733 10 6 1.6712 -6.5855 3.2483 11 1 0.7427 -6.6353 2.6796 12 6 1.4519 -7.1698 4.6200 13 1 1.6109 -6.5612 5.4980 14 6 1.0483 -8.4813 4.7543 15 7 0.8552 -9.2226 3.6853 16 14 0.7772 -9.2058 6.4546 17 1 -0.2763 -8.4323 7.1599 18 1 0.3500 -10.6222 6.3268 19 1 2.0425 -9.1387 7.2289 20 6 2.7409 -7.3702 2.5333 21 6 2.5311 -8.3283 1.6129 22 6 3.8036 -8.7919 1.2068 23 6 4.7146 -8.0950 1.9095 24 8 4.0653 -7.2353 2.7113 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6442 1.2952 34 1 2.0700 -2.6549 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 1.7115 -2.4573 3.3249 37 1 3.2321 -2.8397 2.4826 38 1 0.5717 -10.1454 3.7797 39 1 1.5743 -8.6753 1.2516 40 1 4.0053 -9.5605 0.4756 41 1 5.7866 -8.2079 1.8408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123370893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:12 Heat of formation + Delta-G solvation = -103.372995 kcal Electronic energy + Delta-G solvation = -21906.100381 eV Core-core repulsion = 18558.969309 eV Total energy + Delta-G solvation = -3347.131072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33828 -39.56193 -37.19379 -35.70884 -33.28331 -32.74945 -31.70325 -29.69458 -27.56628 -27.24604 -26.50087 -23.38793 -22.18020 -20.61590 -20.08986 -19.98013 -19.19432 -17.18044 -16.62310 -16.41409 -15.94142 -15.27463 -15.05709 -14.74903 -14.46836 -14.22386 -14.04636 -13.46831 -12.97754 -12.70244 -12.38386 -12.36565 -11.86543 -11.78630 -11.74182 -11.59727 -11.55100 -11.26374 -11.12164 -10.99898 -10.94166 -10.72466 -10.66295 -10.43555 -10.37628 -10.06964 -9.62511 -9.39100 -8.81454 -8.64173 -7.25197 -6.20761 -4.38827 2.87703 2.96946 3.23544 3.26883 3.28742 3.56837 3.96318 4.19759 4.28472 4.68780 4.77893 4.82807 5.07057 5.15860 5.19467 5.41074 5.47976 5.55537 5.58185 5.68427 5.74677 5.79541 5.81271 5.86583 5.92281 6.05835 6.09394 6.10535 6.17145 6.35797 6.38677 6.44096 6.74772 6.99548 7.16073 7.23882 7.41922 7.70369 7.71060 7.87994 8.37264 8.54127 8.80437 9.28041 10.78000 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.003998 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.412268 B = 7001.219307 C = 7770.681533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.115 4.115 7 C 0.451 3.549 8 O -0.518 6.518 9 O -0.351 6.351 10 C 0.297 3.703 11 H 0.078 0.922 12 C -0.532 4.532 13 H 0.077 0.923 14 C 0.069 3.931 15 N -0.868 5.868 16 Si 0.914 3.086 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.026 3.974 21 C -0.179 4.179 22 C -0.218 4.218 23 C -0.089 4.089 24 O -0.177 6.177 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.269 0.731 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 13.618 -5.144 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.153 4.153 7 C 0.294 3.706 8 O -0.408 6.408 9 O -0.267 6.267 10 C 0.244 3.756 11 H 0.096 0.904 12 C -0.569 4.569 13 H 0.095 0.905 14 C -0.137 4.137 15 N -0.503 5.503 16 Si 0.741 3.259 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.199 1.199 20 C -0.025 4.025 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.157 4.157 24 O -0.074 6.074 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.957 13.450 -5.270 14.745 hybrid contribution -0.070 -1.108 0.607 1.266 sum 2.887 12.342 -4.662 13.506 Atomic orbital electron populations 1.21912 0.95267 1.02284 1.01377 1.21116 0.96035 0.95899 0.98602 1.21847 1.00843 0.96187 1.01543 1.21660 1.00870 0.94821 0.97854 1.21477 1.02262 0.94041 0.96949 1.21367 1.03560 0.89219 1.01113 1.23585 0.76580 0.89693 0.80757 1.90606 1.37901 1.78383 1.33888 1.86548 1.71705 1.23639 1.44784 1.19153 0.88805 0.70570 0.97080 0.90425 1.20863 1.48268 0.97385 0.90379 0.90505 1.24950 0.94341 0.96242 0.98141 1.70025 1.43234 1.08546 1.28447 0.86287 0.78918 0.77904 0.82824 1.19713 1.20940 1.19854 1.23567 0.80698 1.01664 0.96524 1.21208 0.97693 1.00185 1.00726 1.21690 0.93627 1.03938 1.04467 1.23601 0.97572 0.96982 0.97513 1.83991 1.19375 1.51051 1.52941 0.92001 0.92779 0.93076 0.91179 0.92801 0.92933 0.92778 0.91776 0.91841 0.91170 0.90792 0.88243 0.88357 0.92115 0.84127 0.85152 0.79894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.95 37.16 0.33 -1.06 16 2 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.11 -1.12 4.68 -26.73 -0.13 -1.24 16 5 C -0.11 -1.39 4.26 -26.73 -0.11 -1.50 16 6 C -0.11 -1.64 5.81 -27.88 -0.16 -1.80 16 7 C 0.45 9.28 7.92 36.01 0.29 9.56 16 8 O -0.52 -11.99 15.20 -18.75 -0.29 -12.28 16 9 O -0.35 -8.36 9.85 -41.26 -0.41 -8.77 16 10 C 0.30 7.97 2.42 -29.03 -0.07 7.90 16 11 H 0.08 2.22 7.15 -51.93 -0.37 1.85 16 12 C -0.53 -14.81 8.89 -34.44 -0.31 -15.12 16 13 H 0.08 2.09 7.81 -52.48 -0.41 1.68 16 14 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 15 N -0.87 -24.18 10.92 55.43 0.61 -23.57 16 16 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.03 0.70 5.54 -35.62 -0.20 0.50 16 21 C -0.18 -4.51 9.16 -39.70 -0.36 -4.87 16 22 C -0.22 -4.72 10.91 -39.70 -0.43 -5.15 16 23 C -0.09 -1.86 12.09 29.42 0.36 -1.51 16 24 O -0.18 -4.41 10.65 4.47 0.05 -4.36 16 25 H 0.06 0.63 6.57 -51.93 -0.34 0.29 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.14 3.63 7.85 -52.49 -0.41 3.22 16 40 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -31.05 345.37 -7.17 -38.22 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.50 Total: 4.04 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.82 Total: -14.46 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.61 Total: -23.57 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.64 Total: -25.41 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.05 -7.17 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.153 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds