Wall clock time and date at job start Tue Mar 31 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46668 * 2 1 4 4 C 1.53002 * 109.46976 * 119.99637 * 2 1 3 5 5 C 1.52996 * 109.46891 * 65.00546 * 4 2 1 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46906 * 60.00442 * 16 14 12 18 18 H 1.48500 * 109.47270 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47589 * 300.00565 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 1.09003 * 109.46567 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47183 * 300.00070 * 1 2 3 27 27 H 1.09000 * 109.47144 * 60.00304 * 1 2 3 28 28 H 1.09002 * 109.47308 * 240.00119 * 2 1 3 29 29 H 1.09009 * 109.47141 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47585 * 299.99780 * 3 2 1 31 31 H 1.09006 * 109.47638 * 60.00007 * 3 2 1 32 32 H 1.08992 * 109.47056 * 305.00199 * 4 2 1 33 33 H 1.08996 * 109.46698 * 185.00315 * 4 2 1 34 34 H 1.09001 * 109.47372 * 59.99964 * 5 4 2 35 35 H 1.09004 * 109.47108 * 299.99708 * 5 4 2 36 36 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 37 37 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 38 38 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 39 39 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 40 40 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 41 41 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 6 2.1458 -2.9167 2.4370 7 6 1.7467 -4.3687 2.3769 8 8 1.1188 -4.7840 1.4319 9 8 2.0887 -5.2005 3.3733 10 6 1.6712 -6.5855 3.2483 11 1 0.7427 -6.6353 2.6796 12 6 1.4519 -7.1698 4.6200 13 1 1.6109 -6.5612 5.4980 14 6 1.0483 -8.4813 4.7543 15 7 0.8552 -9.2226 3.6853 16 14 0.7772 -9.2058 6.4546 17 1 -0.2763 -8.4323 7.1599 18 1 0.3500 -10.6222 6.3268 19 1 2.0425 -9.1387 7.2289 20 6 2.7409 -7.3702 2.5333 21 6 2.5311 -8.3283 1.6129 22 6 3.8036 -8.7919 1.2068 23 6 4.7146 -8.0950 1.9095 24 8 4.0653 -7.2353 2.7113 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6054 -0.2617 2.1369 33 1 3.1263 -0.6442 1.2952 34 1 2.0700 -2.6549 0.3003 35 1 0.5490 -2.2724 1.1421 36 1 1.7115 -2.4573 3.3249 37 1 3.2321 -2.8397 2.4826 38 1 0.5717 -10.1454 3.7797 39 1 1.5743 -8.6753 1.2516 40 1 4.0053 -9.5605 0.4756 41 1 5.7866 -8.2079 1.8408 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123370893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:12 Heat of formation + Delta-G solvation = -119.516341 kcal Electronic energy + Delta-G solvation = -21906.800409 eV Core-core repulsion = 18558.969309 eV Total energy + Delta-G solvation = -3347.831100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.18959 -41.27839 -38.18617 -37.37737 -35.29782 -33.85693 -33.56166 -31.59096 -28.86180 -28.21802 -27.94932 -25.16791 -23.50633 -22.39873 -21.64886 -21.00491 -20.78313 -19.06579 -18.48180 -18.13677 -17.33266 -17.08724 -16.55467 -16.30468 -16.11040 -15.34371 -15.09258 -14.72687 -14.42834 -14.19730 -13.93389 -13.53220 -13.49637 -13.18506 -13.09827 -13.04354 -13.00084 -12.78857 -12.62033 -12.48095 -12.22479 -12.03280 -11.89578 -11.61327 -11.43535 -11.40233 -11.29316 -11.22073 -10.81169 -10.53349 -9.13311 -8.24959 -6.54074 1.08592 1.31531 1.38905 1.43564 1.50508 1.89032 2.12359 2.40281 2.41809 3.00084 3.77149 3.80883 3.97907 4.11313 4.20753 4.22385 4.38326 4.38605 4.52826 4.59646 4.66023 4.70570 4.76308 4.86086 4.90771 5.00094 5.06480 5.12355 5.14070 5.23885 5.29480 5.32175 5.41770 5.42483 5.44874 5.55331 5.58240 5.67343 5.82916 5.97110 6.47208 6.57571 6.93234 7.18400 8.71918 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.020653 B = 0.003998 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.412268 B = 7001.219307 C = 7770.681533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.107 4.107 5 C -0.104 4.104 6 C -0.103 4.103 7 C 0.441 3.559 8 O -0.552 6.552 9 O -0.360 6.360 10 C 0.299 3.701 11 H 0.040 0.960 12 C -0.559 4.559 13 H 0.075 0.925 14 C 0.023 3.977 15 N -0.892 5.892 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.269 1.269 20 C -0.004 4.004 21 C -0.193 4.193 22 C -0.228 4.228 23 C -0.070 4.070 24 O -0.194 6.194 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.271 0.729 39 H 0.121 0.879 40 H 0.166 0.834 41 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 14.497 -4.435 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.200 4.200 4 C -0.144 4.144 5 C -0.142 4.142 6 C -0.141 4.141 7 C 0.286 3.714 8 O -0.443 6.443 9 O -0.277 6.277 10 C 0.245 3.755 11 H 0.058 0.942 12 C -0.595 4.595 13 H 0.093 0.907 14 C -0.180 4.180 15 N -0.526 5.526 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.194 1.194 20 C -0.055 4.055 21 C -0.213 4.213 22 C -0.247 4.247 23 C -0.136 4.136 24 O -0.092 6.092 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.755 14.355 -4.572 15.798 hybrid contribution -0.609 -1.368 0.273 1.522 sum 4.147 12.987 -4.300 14.295 Atomic orbital electron populations 1.21916 0.95553 1.01358 1.02081 1.21127 0.95833 0.96860 0.98002 1.21809 1.01182 0.94951 1.02106 1.21621 1.01761 0.92317 0.98711 1.21454 1.01303 0.95956 0.95498 1.21580 1.05145 0.84376 1.02959 1.24941 0.75512 0.91501 0.79417 1.90584 1.39452 1.79308 1.34974 1.86540 1.72026 1.22821 1.46286 1.18717 0.88105 0.72336 0.96296 0.94196 1.21144 1.49439 0.98188 0.90775 0.90719 1.25860 0.93632 0.96340 1.02183 1.70164 1.43351 1.08677 1.30456 0.85251 0.79101 0.77270 0.77930 1.18609 1.20200 1.19362 1.23348 0.81461 1.02758 0.97920 1.21282 0.98618 1.00400 1.01012 1.22044 0.91909 1.05122 1.05614 1.24697 0.99724 0.94346 0.94831 1.83960 1.18724 1.52365 1.54102 0.93720 0.92132 0.92366 0.91933 0.92235 0.92446 0.92193 0.90521 0.90533 0.92762 0.92133 0.85625 0.85949 0.92031 0.86128 0.81650 0.74282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.95 71.98 0.64 -2.03 16 2 C -0.10 -1.68 2.92 -10.79 -0.03 -1.71 16 3 C -0.14 -1.91 9.19 71.98 0.66 -1.24 16 4 C -0.11 -1.87 4.68 30.59 0.14 -1.72 16 5 C -0.10 -2.60 4.26 30.59 0.13 -2.47 16 6 C -0.10 -2.85 5.81 29.85 0.17 -2.67 16 7 C 0.44 18.71 7.92 71.24 0.56 19.27 16 8 O -0.55 -27.00 15.20 21.96 0.33 -26.67 16 9 O -0.36 -17.80 9.85 -49.39 -0.49 -18.29 16 10 C 0.30 16.86 2.42 29.10 0.07 16.93 16 11 H 0.04 2.49 7.15 -2.39 -0.02 2.47 16 12 C -0.56 -32.13 8.89 25.60 0.23 -31.91 16 13 H 0.07 4.18 7.81 -2.91 -0.02 4.16 16 14 C 0.02 1.28 5.30 84.65 0.45 1.73 16 15 N -0.89 -51.11 10.92 21.45 0.23 -50.88 16 16 Si 0.98 43.22 29.54 68.60 2.03 45.24 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 20 C 0.00 -0.24 5.54 24.83 0.14 -0.10 16 21 C -0.19 -10.02 9.16 22.19 0.20 -9.82 16 22 C -0.23 -9.55 10.91 22.19 0.24 -9.31 16 23 C -0.07 -2.73 12.09 66.97 0.81 -1.92 16 24 O -0.19 -9.59 10.65 -1.37 -0.01 -9.61 16 25 H 0.04 0.93 6.57 -2.39 -0.02 0.91 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.06 1.66 6.52 -2.38 -0.02 1.65 16 36 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.12 6.60 7.85 -2.91 -0.02 6.58 16 40 H 0.17 5.60 8.06 -2.92 -0.02 5.58 16 41 H 0.24 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -70.84 345.37 7.51 -63.32 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.00 Total: 23.85 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 4.42 Total: -26.97 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: 0.23 Total: -50.88 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.17 Total: -54.56 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.84 7.51 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123370893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.195 kcal (2) G-P(sol) polarization free energy of solvation -70.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds