Wall clock time and date at job start Tue Mar 31 2020 01:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.52997 * 109.47232 * 294.99885 * 3 2 1 6 6 C 1.53006 * 109.47127 * 174.99763 * 3 2 1 7 7 H 1.08998 * 109.46505 * 59.99871 * 6 3 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 6 3 2 9 9 C 1.50697 * 109.47239 * 300.00495 * 6 3 2 10 10 O 1.20833 * 120.00046 * 359.97438 * 9 6 3 11 11 O 1.34228 * 120.00167 * 180.02562 * 9 6 3 12 12 C 1.45196 * 117.00058 * 179.97438 * 11 9 6 13 13 H 1.08993 * 109.47477 * 329.99581 * 12 11 9 14 14 C 1.50702 * 109.46941 * 209.99807 * 12 11 9 15 15 H 1.07998 * 120.00330 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00107 * 180.02562 * 14 12 11 17 17 N 1.31522 * 119.99574 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00154 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46981 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.46705 * 209.99686 * 18 16 14 21 21 H 1.48493 * 109.47101 * 329.99608 * 18 16 14 22 22 C 1.50702 * 109.47017 * 90.00148 * 12 11 9 23 23 C 1.34523 * 125.78559 * 219.71416 * 22 12 11 24 24 C 1.41382 * 106.83603 * 179.88681 * 23 22 12 25 25 C 1.34513 * 106.84652 * 0.37348 * 24 23 22 26 26 O 1.34301 * 125.79220 * 40.02192 * 22 12 11 27 27 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 28 28 H 1.09002 * 109.47137 * 60.00369 * 1 2 3 29 29 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47105 * 240.00184 * 2 1 3 31 31 H 1.09006 * 109.47074 * 120.00389 * 2 1 3 32 32 H 1.09001 * 109.47375 * 299.99867 * 5 3 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 5 3 2 34 34 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 6 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 6 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 8 6 3 38 38 H 0.97003 * 119.99599 * 180.02562 * 17 16 14 39 39 H 1.07997 * 126.58145 * 0.02562 * 23 22 12 40 40 H 1.08007 * 126.57751 * 180.16555 * 24 23 22 41 41 H 1.08000 * 125.79288 * 179.74771 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.9994 0.9053 -0.7160 8 6 4.0749 2.8868 0.1251 9 6 3.9635 0.7705 1.4134 10 8 3.1151 0.3340 2.1548 11 8 5.2611 0.6561 1.7373 12 6 5.5714 -0.0038 2.9928 13 1 4.7598 0.1623 3.7010 14 6 6.8511 0.5605 3.5541 15 1 7.3787 1.3371 3.0204 16 6 7.3491 0.0846 4.7485 17 7 6.7069 -0.8616 5.3982 18 14 8.9357 0.7836 5.4438 19 1 8.6243 1.9410 6.3205 20 1 9.6329 -0.2626 6.2342 21 1 9.8110 1.2278 4.3296 22 6 5.7362 -1.4829 2.7555 23 6 5.2995 -2.4632 3.5667 24 6 5.6633 -3.6880 2.9614 25 6 6.3079 -3.3829 1.8209 26 8 6.3490 -2.0458 1.7013 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.0699 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3969 34 1 1.9982 3.1543 -1.3071 35 1 5.1613 2.8881 0.2143 36 1 3.6403 3.4262 0.9667 37 1 3.7865 3.3738 -0.8065 38 1 7.0570 -1.1962 6.2387 39 1 4.7704 -2.3386 4.4998 40 1 5.4650 -4.6786 3.3434 41 1 6.7223 -4.0927 1.1203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:58 Heat of formation + Delta-G solvation = -92.972671 kcal Electronic energy + Delta-G solvation = -22903.232507 eV Core-core repulsion = 19556.552427 eV Total energy + Delta-G solvation = -3346.680080 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.34273 -39.91718 -37.10769 -35.33553 -33.31578 -32.26509 -31.70395 -29.64575 -28.51998 -26.65926 -25.72717 -23.61229 -22.41793 -20.79468 -20.43301 -19.52509 -19.10983 -17.26371 -16.62635 -16.47270 -15.56780 -15.10622 -14.97078 -14.86731 -14.47801 -13.94610 -13.53912 -13.10291 -13.00120 -12.63589 -12.53171 -12.11795 -11.86368 -11.74524 -11.63254 -11.55776 -11.48818 -11.35210 -11.15094 -11.13922 -10.95588 -10.56696 -10.43959 -10.36790 -10.28346 -9.95642 -9.37367 -9.31236 -8.81630 -8.64469 -7.25278 -6.21128 -4.38880 2.87503 2.95904 3.21298 3.26767 3.30582 3.56374 3.96035 4.19579 4.28400 4.73823 4.93197 5.05973 5.13817 5.36057 5.43497 5.53485 5.56213 5.58278 5.68525 5.78327 5.86606 5.92554 6.04349 6.05507 6.08110 6.10708 6.15397 6.29826 6.36397 6.43066 6.54969 6.63394 6.80328 6.99574 7.16494 7.23779 7.43343 7.70245 7.71135 7.88468 8.37411 8.54814 8.81178 9.28051 10.77631 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.005719 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.428524 B = 4894.541715 C = 5786.919873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.082 4.082 7 H 0.101 0.899 8 C -0.145 4.145 9 C 0.457 3.543 10 O -0.512 6.512 11 O -0.348 6.348 12 C 0.297 3.703 13 H 0.078 0.922 14 C -0.530 4.530 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.868 5.868 18 Si 0.913 3.087 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.027 3.973 23 C -0.179 4.179 24 C -0.218 4.218 25 C -0.089 4.089 26 O -0.177 6.177 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.268 0.732 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.016 2.313 -10.333 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.206 4.206 6 C -0.101 4.101 7 H 0.119 0.881 8 C -0.202 4.202 9 C 0.300 3.700 10 O -0.401 6.401 11 O -0.264 6.264 12 C 0.244 3.756 13 H 0.095 0.905 14 C -0.567 4.567 15 H 0.095 0.905 16 C -0.137 4.137 17 N -0.502 5.502 18 Si 0.739 3.261 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.024 4.024 23 C -0.199 4.199 24 C -0.237 4.237 25 C -0.157 4.157 26 O -0.073 6.073 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.148 0.852 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.092 2.209 -10.134 12.565 hybrid contribution 0.906 -0.322 0.824 1.267 sum -6.186 1.887 -9.310 11.336 Atomic orbital electron populations 1.21748 0.96209 1.01140 1.01241 1.21865 0.95816 0.96250 1.03427 1.21019 0.92327 0.97366 0.98581 0.90435 1.21940 1.01357 1.00405 0.96850 1.21072 0.97022 0.97767 0.94215 0.88116 1.21800 1.02536 0.93503 1.02339 1.23509 0.82051 0.76703 0.87776 1.90545 1.51600 1.46263 1.51711 1.86548 1.25615 1.70921 1.43270 1.19150 0.98537 0.79663 0.78264 0.90469 1.20894 1.07640 1.22260 1.05950 0.90484 1.24948 0.98081 0.94505 0.96127 1.70039 1.38853 1.25747 1.15603 0.86245 0.82118 0.78641 0.79046 1.20166 1.20898 1.19449 1.23562 0.95435 0.96821 0.86548 1.21211 1.06991 0.90283 1.01387 1.21689 1.05701 0.98989 0.97329 1.23597 1.07801 0.82820 1.01455 1.83992 1.61673 1.19119 1.42558 0.92823 0.93187 0.93197 0.92839 0.89047 0.92693 0.92286 0.92344 0.90941 0.92187 0.91419 0.92191 0.84144 0.85179 0.79922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 37.16 0.36 -1.38 16 2 C -0.14 -1.92 5.14 -26.73 -0.14 -2.06 16 3 C -0.07 -0.98 1.62 -90.62 -0.15 -1.13 16 4 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 5 C -0.15 -1.49 8.59 37.16 0.32 -1.17 16 6 C -0.08 -1.22 2.42 -91.77 -0.22 -1.44 16 7 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 8 C -0.14 -1.86 8.77 37.16 0.33 -1.54 16 9 C 0.46 9.32 6.90 36.00 0.25 9.57 16 10 O -0.51 -11.51 12.89 -18.76 -0.24 -11.76 16 11 O -0.35 -8.19 9.75 -41.28 -0.40 -8.60 16 12 C 0.30 7.88 2.42 -29.03 -0.07 7.80 16 13 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 14 C -0.53 -14.65 8.89 -34.44 -0.31 -14.96 16 15 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.06 10.92 55.43 0.61 -23.46 16 18 Si 0.91 20.93 29.54 -169.99 -5.02 15.90 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.03 0.71 5.54 -35.62 -0.20 0.52 16 23 C -0.18 -4.49 9.16 -39.70 -0.36 -4.86 16 24 C -0.22 -4.69 10.91 -39.70 -0.43 -5.12 16 25 C -0.09 -1.85 12.09 29.42 0.36 -1.50 16 26 O -0.18 -4.37 10.65 4.46 0.05 -4.33 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.09 1.62 5.42 -51.93 -0.28 1.34 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 34 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 35 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.14 3.61 7.85 -52.49 -0.41 3.19 16 40 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.18 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 336.20 15.07 5.07 5.07 Total: -1.00 -30.30 336.20 -6.49 -36.80 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.18 Total: 5.86 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.36 Total: -15.49 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.61 Total: -23.46 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.60 Total: -24.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.30 -6.49 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.177 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds