Wall clock time and date at job start Tue Mar 31 2020 01:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.52997 * 109.47232 * 294.99885 * 3 2 1 6 6 C 1.53006 * 109.47127 * 174.99763 * 3 2 1 7 7 H 1.08998 * 109.46505 * 59.99871 * 6 3 2 8 8 C 1.52997 * 109.47127 * 179.97438 * 6 3 2 9 9 C 1.50697 * 109.47239 * 300.00495 * 6 3 2 10 10 O 1.20833 * 120.00046 * 359.97438 * 9 6 3 11 11 O 1.34228 * 120.00167 * 180.02562 * 9 6 3 12 12 C 1.45196 * 117.00058 * 179.97438 * 11 9 6 13 13 H 1.08993 * 109.47477 * 329.99581 * 12 11 9 14 14 C 1.50702 * 109.46941 * 209.99807 * 12 11 9 15 15 H 1.07998 * 120.00330 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00107 * 180.02562 * 14 12 11 17 17 N 1.31522 * 119.99574 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00154 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46981 * 89.99860 * 18 16 14 20 20 H 1.48503 * 109.46705 * 209.99686 * 18 16 14 21 21 H 1.48493 * 109.47101 * 329.99608 * 18 16 14 22 22 C 1.50702 * 109.47017 * 90.00148 * 12 11 9 23 23 C 1.34523 * 125.78559 * 219.71416 * 22 12 11 24 24 C 1.41382 * 106.83603 * 179.88681 * 23 22 12 25 25 C 1.34513 * 106.84652 * 0.37348 * 24 23 22 26 26 O 1.34301 * 125.79220 * 40.02192 * 22 12 11 27 27 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 28 28 H 1.09002 * 109.47137 * 60.00369 * 1 2 3 29 29 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47105 * 240.00184 * 2 1 3 31 31 H 1.09006 * 109.47074 * 120.00389 * 2 1 3 32 32 H 1.09001 * 109.47375 * 299.99867 * 5 3 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 5 3 2 34 34 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 6 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 6 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 8 6 3 38 38 H 0.97003 * 119.99599 * 180.02562 * 17 16 14 39 39 H 1.07997 * 126.58145 * 0.02562 * 23 22 12 40 40 H 1.08007 * 126.57751 * 180.16555 * 24 23 22 41 41 H 1.08000 * 125.79288 * 179.74771 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.9994 0.9053 -0.7160 8 6 4.0749 2.8868 0.1251 9 6 3.9635 0.7705 1.4134 10 8 3.1151 0.3340 2.1548 11 8 5.2611 0.6561 1.7373 12 6 5.5714 -0.0038 2.9928 13 1 4.7598 0.1623 3.7010 14 6 6.8511 0.5605 3.5541 15 1 7.3787 1.3371 3.0204 16 6 7.3491 0.0846 4.7485 17 7 6.7069 -0.8616 5.3982 18 14 8.9357 0.7836 5.4438 19 1 8.6243 1.9410 6.3205 20 1 9.6329 -0.2626 6.2342 21 1 9.8110 1.2278 4.3296 22 6 5.7362 -1.4829 2.7555 23 6 5.2995 -2.4632 3.5667 24 6 5.6633 -3.6880 2.9614 25 6 6.3079 -3.3829 1.8209 26 8 6.3490 -2.0458 1.7013 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 2.0699 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3969 34 1 1.9982 3.1543 -1.3071 35 1 5.1613 2.8881 0.2143 36 1 3.6403 3.4262 0.9667 37 1 3.7865 3.3738 -0.8065 38 1 7.0570 -1.1962 6.2387 39 1 4.7704 -2.3386 4.4998 40 1 5.4650 -4.6786 3.3434 41 1 6.7223 -4.0927 1.1203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461336.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:57 Heat of formation + Delta-G solvation = -109.089756 kcal Electronic energy + Delta-G solvation = -22903.931396 eV Core-core repulsion = 19556.552427 eV Total energy + Delta-G solvation = -3347.378969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19383 -41.53666 -38.50310 -36.97323 -35.31404 -33.56541 -33.44556 -31.52071 -29.51556 -28.57941 -26.84371 -25.33125 -23.91031 -22.44626 -21.99548 -21.15694 -20.57394 -19.11273 -18.45606 -18.13907 -17.37357 -16.79167 -16.66325 -16.34010 -16.01237 -15.32948 -14.90598 -14.56755 -14.52549 -13.93923 -13.68935 -13.59487 -13.49894 -13.41186 -13.23004 -13.05687 -12.94857 -12.78990 -12.60087 -12.43354 -12.39584 -12.21279 -12.07686 -11.64175 -11.51011 -11.32635 -11.29894 -10.81395 -10.80889 -10.53786 -9.13397 -8.25221 -6.53924 1.08367 1.32594 1.38332 1.41126 1.51623 1.88601 2.11876 2.39759 2.41449 2.99936 3.59795 3.80351 3.89069 4.14836 4.22340 4.34676 4.37890 4.39362 4.54287 4.57040 4.64517 4.65596 4.73600 4.82250 4.93880 4.99760 5.11677 5.13543 5.15518 5.19139 5.29962 5.32284 5.35786 5.41767 5.44288 5.51553 5.62120 5.69013 5.84099 6.00161 6.47320 6.58227 6.95859 7.18853 8.71793 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.018255 B = 0.005719 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.428524 B = 4894.541715 C = 5786.919873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C -0.071 4.071 4 H 0.061 0.939 5 C -0.141 4.141 6 C -0.075 4.075 7 H 0.118 0.882 8 C -0.140 4.140 9 C 0.445 3.555 10 O -0.539 6.539 11 O -0.358 6.358 12 C 0.301 3.699 13 H 0.039 0.961 14 C -0.556 4.556 15 H 0.074 0.926 16 C 0.024 3.976 17 N -0.892 5.892 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.002 4.002 23 C -0.195 4.195 24 C -0.227 4.227 25 C -0.070 4.070 26 O -0.195 6.195 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.270 0.730 39 H 0.120 0.880 40 H 0.165 0.835 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 2.362 -12.567 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.176 4.176 3 C -0.089 4.089 4 H 0.080 0.920 5 C -0.198 4.198 6 C -0.094 4.094 7 H 0.135 0.865 8 C -0.197 4.197 9 C 0.290 3.710 10 O -0.430 6.430 11 O -0.274 6.274 12 C 0.247 3.753 13 H 0.057 0.943 14 C -0.593 4.593 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.527 5.527 18 Si 0.803 3.197 19 H -0.191 1.191 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.052 4.052 23 C -0.215 4.215 24 C -0.246 4.246 25 C -0.137 4.137 26 O -0.092 6.092 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.624 2.266 -12.380 14.222 hybrid contribution 0.668 -0.422 1.497 1.693 sum -5.956 1.844 -10.883 12.542 Atomic orbital electron populations 1.21717 0.94455 1.01628 1.02076 1.21823 0.97449 0.96617 1.01680 1.21034 0.90672 0.96968 1.00259 0.92019 1.21909 1.02350 1.00874 0.94665 1.21313 0.98500 0.98540 0.91007 0.86453 1.21828 1.01655 0.92067 1.04193 1.24809 0.80633 0.76189 0.89347 1.90537 1.51893 1.47402 1.53161 1.86539 1.27795 1.71060 1.42029 1.18691 0.96905 0.80862 0.78864 0.94327 1.21155 1.08312 1.22898 1.06925 0.90826 1.25844 1.01345 0.94646 0.96107 1.70176 1.40186 1.26550 1.15759 0.85216 0.77859 0.78196 0.78398 1.19074 1.20330 1.18846 1.23340 0.97400 0.96723 0.87745 1.21282 1.07124 0.92251 1.00796 1.22037 1.05886 0.99189 0.97536 1.24683 1.05514 0.81765 1.01701 1.83961 1.61872 1.21160 1.42180 0.93702 0.90545 0.92973 0.91768 0.93506 0.91444 0.90997 0.90802 0.92126 0.92849 0.87410 0.92075 0.86159 0.81705 0.74349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.67 71.98 0.70 -2.54 16 2 C -0.14 -3.88 5.14 30.59 0.16 -3.73 16 3 C -0.07 -1.80 1.62 -10.79 -0.02 -1.82 16 4 H 0.06 1.76 8.10 -2.39 -0.02 1.74 16 5 C -0.14 -2.34 8.59 71.98 0.62 -1.73 16 6 C -0.07 -2.20 2.42 -11.54 -0.03 -2.23 16 7 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 8 C -0.14 -3.44 8.77 71.98 0.63 -2.81 16 9 C 0.45 19.11 6.90 71.23 0.49 19.60 16 10 O -0.54 -26.11 12.89 21.94 0.28 -25.83 16 11 O -0.36 -17.78 9.75 -49.46 -0.48 -18.26 16 12 C 0.30 16.93 2.42 29.10 0.07 17.00 16 13 H 0.04 2.42 7.15 -2.39 -0.02 2.40 16 14 C -0.56 -32.01 8.89 25.60 0.23 -31.78 16 15 H 0.07 4.14 7.81 -2.91 -0.02 4.12 16 16 C 0.02 1.32 5.30 84.65 0.45 1.76 16 17 N -0.89 -51.18 10.92 21.45 0.23 -50.95 16 18 Si 0.98 43.34 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.00 -0.08 5.54 24.84 0.14 0.05 16 23 C -0.19 -10.13 9.16 22.19 0.20 -9.92 16 24 C -0.23 -9.58 10.91 22.19 0.24 -9.34 16 25 C -0.07 -2.77 12.09 66.97 0.81 -1.96 16 26 O -0.19 -9.64 10.65 -1.37 -0.01 -9.66 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.34 6.57 -2.39 -0.02 1.33 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.05 1.75 5.42 -2.38 -0.01 1.73 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.05 6.56 -2.39 -0.02 1.03 16 34 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 35 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 1.79 6.43 -2.38 -0.02 1.77 16 38 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 39 H 0.12 6.61 7.85 -2.91 -0.02 6.58 16 40 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 41 H 0.24 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -70.63 336.20 7.75 -62.88 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 1.01 Total: 25.89 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: 4.69 Total: -29.44 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.23 Total: -50.95 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.21 Total: -53.75 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.63 7.75 -62.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461336.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.210 kcal (2) G-P(sol) polarization free energy of solvation -70.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds