Wall clock time and date at job start Tue Mar 31 2020 01:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 H 1.09001 * 109.46997 * 54.99688 * 3 2 1 5 5 C 1.52997 * 109.47131 * 295.00114 * 3 2 1 6 6 C 1.52992 * 109.47224 * 174.99605 * 3 2 1 7 7 H 1.08998 * 109.46862 * 60.00859 * 6 3 2 8 8 C 1.52997 * 109.47482 * 300.00294 * 6 3 2 9 9 C 1.50706 * 109.47161 * 179.97438 * 6 3 2 10 10 O 1.20825 * 119.99819 * 0.02562 * 9 6 3 11 11 O 1.34226 * 119.99822 * 179.97438 * 9 6 3 12 12 C 1.45209 * 116.99600 * 179.97438 * 11 9 6 13 13 H 1.08993 * 109.47297 * 330.00795 * 12 11 9 14 14 C 1.50697 * 109.47183 * 210.00329 * 12 11 9 15 15 H 1.08007 * 119.99794 * 0.02562 * 14 12 11 16 16 C 1.37875 * 120.00288 * 180.02562 * 14 12 11 17 17 N 1.31514 * 119.99487 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00308 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47199 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47187 * 119.99782 * 18 16 14 21 21 H 1.48498 * 109.47109 * 239.99939 * 18 16 14 22 22 C 1.50706 * 109.46634 * 90.00776 * 12 11 9 23 23 C 1.34512 * 125.78635 * 219.71335 * 22 12 11 24 24 C 1.41380 * 106.83985 * 179.88685 * 23 22 12 25 25 C 1.34517 * 106.84202 * 0.37298 * 24 23 22 26 26 O 1.34299 * 125.79198 * 40.02227 * 22 12 11 27 27 H 1.09007 * 109.46960 * 59.99834 * 1 2 3 28 28 H 1.08992 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47370 * 300.00173 * 1 2 3 30 30 H 1.08997 * 109.46927 * 240.00122 * 2 1 3 31 31 H 1.08998 * 109.46693 * 120.00194 * 2 1 3 32 32 H 1.09001 * 109.47289 * 299.99950 * 5 3 2 33 33 H 1.09004 * 109.47261 * 59.99694 * 5 3 2 34 34 H 1.09002 * 109.47153 * 179.97438 * 5 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 8 6 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 8 6 3 37 37 H 1.09004 * 109.47261 * 179.97438 * 8 6 3 38 38 H 0.97002 * 119.99419 * 179.97438 * 17 16 14 39 39 H 1.08006 * 126.57723 * 0.02749 * 23 22 12 40 40 H 1.08006 * 126.57822 * 180.16332 * 24 23 22 41 41 H 1.07993 * 125.78998 * 179.74739 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5649 1.4442 0.1258 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7601 1.4331 9 6 4.0674 2.8650 0.1252 10 8 3.2860 3.7821 0.0340 11 8 5.3828 3.1116 0.2270 12 6 5.7949 4.5040 0.2191 13 1 5.0904 5.0881 -0.3727 14 6 7.1717 4.6170 -0.3832 15 1 7.6854 3.7310 -0.7262 16 6 7.7755 5.8513 -0.4964 17 7 7.1497 6.9301 -0.0792 18 14 9.4818 5.9914 -1.2436 19 1 9.9646 4.6418 -1.6317 20 1 9.4259 6.8622 -2.4452 21 1 10.4115 6.5816 -0.2474 22 6 5.8201 5.0283 1.6318 23 6 5.4149 6.2492 2.0250 24 6 5.6108 6.3150 3.4236 25 6 6.1317 5.1333 3.8003 26 8 6.2563 4.3580 2.7107 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0700 1.5875 -2.1492 33 1 0.5490 2.1252 -1.3969 34 1 1.9984 3.1543 -1.3071 35 1 3.6062 -0.2675 1.4331 36 1 3.5349 1.2992 2.2749 37 1 5.0560 0.7610 1.5225 38 1 7.5747 7.7985 -0.1585 39 1 5.0145 7.0287 1.3938 40 1 5.3883 7.1543 4.0659 41 1 6.4039 4.8554 4.8077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:00 Heat of formation + Delta-G solvation = -92.903908 kcal Electronic energy + Delta-G solvation = -22813.503282 eV Core-core repulsion = 19466.826184 eV Total energy + Delta-G solvation = -3346.677098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34178 -39.90371 -37.16620 -35.42201 -33.30423 -32.04649 -31.70230 -29.60859 -29.10125 -26.66881 -24.45935 -24.34812 -22.77642 -20.82700 -20.39490 -19.57862 -19.05923 -17.13221 -16.63443 -16.56354 -15.43327 -15.17644 -14.92802 -14.75371 -14.48558 -14.20478 -13.66022 -13.24317 -13.00068 -12.78098 -12.28250 -12.06467 -11.83888 -11.76129 -11.73530 -11.56494 -11.51919 -11.23073 -11.15700 -11.02540 -10.98211 -10.66926 -10.46629 -10.34231 -10.31811 -10.04010 -9.42260 -9.27941 -8.81900 -8.64853 -7.25043 -6.21307 -4.39038 2.87663 2.96277 3.20512 3.26951 3.31377 3.55697 3.96102 4.19713 4.28173 4.74988 4.91543 4.99047 5.07781 5.22390 5.35393 5.40975 5.62352 5.67530 5.73678 5.76975 5.85200 5.93708 5.97099 6.04574 6.05920 6.07416 6.10432 6.26435 6.36080 6.42526 6.51307 6.62638 6.80073 6.99848 7.16543 7.23951 7.43524 7.70386 7.71109 7.88592 8.37643 8.55024 8.81415 9.28030 10.77454 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.005269 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.804301 B = 5312.412771 C = 6005.504720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.076 0.924 5 C -0.162 4.162 6 C -0.081 4.081 7 H 0.102 0.898 8 C -0.145 4.145 9 C 0.457 3.543 10 O -0.512 6.512 11 O -0.348 6.348 12 C 0.297 3.703 13 H 0.078 0.922 14 C -0.530 4.530 15 H 0.078 0.922 16 C 0.069 3.931 17 N -0.867 5.867 18 Si 0.913 3.087 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.281 1.281 22 C 0.028 3.972 23 C -0.180 4.180 24 C -0.217 4.217 25 C -0.089 4.089 26 O -0.177 6.177 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.268 0.732 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -10.125 2.277 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.219 4.219 6 C -0.100 4.100 7 H 0.120 0.880 8 C -0.202 4.202 9 C 0.300 3.700 10 O -0.402 6.402 11 O -0.264 6.264 12 C 0.244 3.756 13 H 0.095 0.905 14 C -0.567 4.567 15 H 0.096 0.904 16 C -0.137 4.137 17 N -0.502 5.502 18 Si 0.739 3.261 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.023 4.023 23 C -0.199 4.199 24 C -0.237 4.237 25 C -0.157 4.157 26 O -0.073 6.073 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.148 0.852 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -8.122 -9.898 2.256 13.001 hybrid contribution 0.974 0.811 -0.088 1.271 sum -7.148 -9.086 2.168 11.762 Atomic orbital electron populations 1.21804 0.95905 1.01170 1.02069 1.21656 0.95903 0.96179 1.02126 1.21016 0.92293 0.96068 0.99920 0.90516 1.22135 1.00918 1.03107 0.95778 1.21064 0.96536 0.91101 1.01340 0.87994 1.21800 1.02920 1.00119 0.95339 1.23493 0.82055 0.91967 0.72476 1.90540 1.56785 1.47135 1.45716 1.86550 1.23924 1.34342 1.81544 1.19158 0.97425 0.74074 0.84975 0.90486 1.20939 0.99995 0.94462 1.41331 0.90429 1.24944 0.98810 0.95094 0.94805 1.70046 1.37808 0.98610 1.43761 0.86195 0.82642 0.78522 0.78717 1.19275 1.20553 1.20687 1.23549 0.97537 0.93211 0.88017 1.21208 1.07403 0.98016 0.93266 1.21688 1.07244 0.98464 0.96308 1.23592 1.08746 0.92413 0.90941 1.83986 1.65902 1.42095 1.15323 0.92439 0.93062 0.92793 0.91943 0.91546 0.93413 0.92868 0.89784 0.91383 0.92317 0.90981 0.92247 0.84155 0.85190 0.79927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.23 5.19 -26.73 -0.14 -1.37 16 3 C -0.07 -0.99 1.62 -90.63 -0.15 -1.13 16 4 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 5 C -0.16 -2.25 8.63 37.16 0.32 -1.93 16 6 C -0.08 -1.21 2.42 -91.77 -0.22 -1.43 16 7 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 8 C -0.14 -1.91 8.78 37.16 0.33 -1.58 16 9 C 0.46 9.35 6.93 36.01 0.25 9.60 16 10 O -0.51 -11.57 12.88 -18.75 -0.24 -11.81 16 11 O -0.35 -8.20 9.75 -41.27 -0.40 -8.61 16 12 C 0.30 7.88 2.42 -29.03 -0.07 7.81 16 13 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 14 C -0.53 -14.67 8.89 -34.44 -0.31 -14.97 16 15 H 0.08 2.12 7.81 -52.48 -0.41 1.71 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 17 N -0.87 -24.05 10.92 55.43 0.61 -23.44 16 18 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.03 0.73 5.54 -35.62 -0.20 0.53 16 23 C -0.18 -4.50 9.16 -39.70 -0.36 -4.87 16 24 C -0.22 -4.69 10.91 -39.70 -0.43 -5.13 16 25 C -0.09 -1.86 12.09 29.42 0.36 -1.50 16 26 O -0.18 -4.35 10.65 4.49 0.05 -4.30 16 27 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.64 6.57 -51.93 -0.34 0.30 16 34 H 0.08 1.44 5.52 -51.93 -0.29 1.15 16 35 H 0.07 0.69 6.32 -51.93 -0.33 0.37 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.03 8.11 -51.93 -0.42 0.60 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.14 3.61 7.85 -52.48 -0.41 3.20 16 40 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 41 H 0.18 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -30.35 336.04 -6.48 -36.83 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.17 Total: 5.59 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.36 Total: -15.24 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.61 Total: -23.44 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.60 Total: -24.71 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.35 -6.48 -36.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.073 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds