Wall clock time and date at job start Tue Mar 31 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 H 1.08993 * 109.47662 * 54.99793 * 3 2 1 5 5 C 1.52997 * 109.46817 * 294.99561 * 3 2 1 6 6 C 1.53006 * 109.46977 * 174.99830 * 3 2 1 7 7 H 1.08996 * 109.46884 * 60.00293 * 6 3 2 8 8 C 1.52997 * 109.47127 * 299.99541 * 6 3 2 9 9 C 1.50708 * 109.46735 * 179.97438 * 6 3 2 10 10 O 1.20820 * 119.99828 * 0.02562 * 9 6 3 11 11 O 1.34229 * 119.99602 * 180.02562 * 9 6 3 12 12 C 1.45196 * 116.99841 * 180.02562 * 11 9 6 13 13 H 1.09007 * 109.47114 * 29.99649 * 12 11 9 14 14 C 1.50697 * 109.47296 * 149.99625 * 12 11 9 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 12 11 16 16 C 1.37882 * 120.00015 * 179.97438 * 14 12 11 17 17 N 1.31510 * 119.99960 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46906 * 89.99939 * 18 16 14 20 20 H 1.48499 * 109.47093 * 209.99627 * 18 16 14 21 21 H 1.48493 * 109.47106 * 330.00205 * 18 16 14 22 22 C 1.50701 * 109.47178 * 269.99851 * 12 11 9 23 23 C 1.34516 * 125.79057 * 144.99586 * 22 12 11 24 24 C 1.41384 * 106.83757 * 180.02562 * 23 22 12 25 25 C 1.34511 * 106.84389 * 0.02562 * 24 23 22 26 26 O 1.34297 * 125.78839 * 324.69395 * 22 12 11 27 27 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47496 * 300.00063 * 1 2 3 29 29 H 1.09002 * 109.46894 * 60.00621 * 1 2 3 30 30 H 1.09000 * 109.47418 * 239.99449 * 2 1 3 31 31 H 1.09006 * 109.47378 * 119.99351 * 2 1 3 32 32 H 1.09004 * 109.47261 * 300.00059 * 5 3 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 34 34 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 6 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 6 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 8 6 3 38 38 H 0.97000 * 120.00300 * 180.02562 * 17 16 14 39 39 H 1.07994 * 126.58219 * 0.04245 * 23 22 12 40 40 H 1.08005 * 126.57350 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.79182 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1264 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9054 -0.7160 8 6 3.9695 0.7605 1.4332 9 6 4.0671 2.8653 0.1251 10 8 3.2856 3.7822 0.0340 11 8 5.3827 3.1120 0.2259 12 6 5.7946 4.5043 0.2192 13 1 5.0053 5.1188 0.6524 14 6 7.0546 4.6593 1.0312 15 1 7.5014 3.7975 1.5045 16 6 7.6376 5.9012 1.1689 17 7 7.0938 6.9505 0.5921 18 14 9.1999 6.0931 2.1749 19 1 10.3814 5.9109 1.2938 20 1 9.2367 7.4496 2.7780 21 1 9.2236 5.0715 3.2522 22 6 6.0532 4.9449 -1.1985 23 6 5.8049 6.1682 -1.6999 24 6 6.1951 6.1410 -3.0585 25 6 6.6580 4.9026 -3.3063 26 8 6.5760 4.1845 -2.1743 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.0699 1.5874 -2.1492 33 1 0.5489 2.1251 -1.3970 34 1 1.9989 3.1540 -1.3077 35 1 5.0558 0.7622 1.5230 36 1 3.6062 -0.2672 1.4332 37 1 3.5348 1.2995 2.2750 38 1 7.5041 7.8241 0.6887 39 1 5.3878 7.0097 -1.1668 40 1 6.1327 6.9576 -3.7625 41 1 7.0371 4.5477 -4.2533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:02 Heat of formation + Delta-G solvation = -92.327173 kcal Electronic energy + Delta-G solvation = -22807.133173 eV Core-core repulsion = 19460.481084 eV Total energy + Delta-G solvation = -3346.652089 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33429 -39.90020 -37.16332 -35.42119 -33.32965 -32.04989 -31.67279 -29.59684 -29.09012 -26.68232 -24.44586 -24.34710 -22.77756 -20.81857 -20.39604 -19.50741 -19.10857 -17.20538 -16.63490 -16.40165 -15.55434 -15.08282 -14.94236 -14.81971 -14.48872 -14.20288 -13.53109 -13.33692 -12.88409 -12.85108 -12.39805 -12.05187 -11.78962 -11.73004 -11.67402 -11.56830 -11.52478 -11.21492 -11.12855 -11.05801 -10.97019 -10.69731 -10.46520 -10.36942 -10.32774 -9.98484 -9.39360 -9.34151 -8.82491 -8.63166 -7.23434 -6.20520 -4.39710 2.89054 2.96754 3.21644 3.26593 3.29562 3.56007 3.97113 4.19955 4.27545 4.75299 4.91788 4.98546 5.07802 5.22776 5.35570 5.41146 5.62555 5.67771 5.73237 5.76842 5.86341 5.93933 5.97418 6.04843 6.06351 6.08326 6.10495 6.26986 6.36606 6.43717 6.51421 6.63687 6.80930 7.01493 7.19917 7.25892 7.44101 7.70648 7.74119 7.88573 8.38593 8.54625 8.81487 9.27385 10.76720 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.005375 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.009853 B = 5208.159461 C = 6115.616315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.162 4.162 6 C -0.081 4.081 7 H 0.101 0.899 8 C -0.145 4.145 9 C 0.457 3.543 10 O -0.512 6.512 11 O -0.348 6.348 12 C 0.298 3.702 13 H 0.077 0.923 14 C -0.529 4.529 15 H 0.077 0.923 16 C 0.069 3.931 17 N -0.868 5.868 18 Si 0.914 3.086 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.022 3.978 23 C -0.176 4.176 24 C -0.218 4.218 25 C -0.091 4.091 26 O -0.179 6.179 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.268 0.732 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -10.175 -2.548 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.219 4.219 6 C -0.101 4.101 7 H 0.119 0.881 8 C -0.202 4.202 9 C 0.300 3.700 10 O -0.402 6.402 11 O -0.264 6.264 12 C 0.245 3.755 13 H 0.095 0.905 14 C -0.566 4.566 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.740 3.260 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.029 4.029 23 C -0.195 4.195 24 C -0.238 4.238 25 C -0.158 4.158 26 O -0.076 6.076 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -7.725 -9.950 -2.551 12.853 hybrid contribution 1.000 0.781 0.101 1.273 sum -6.725 -9.169 -2.450 11.632 Atomic orbital electron populations 1.21803 0.95901 1.01170 1.02070 1.21657 0.95905 0.96178 1.02125 1.21019 0.92290 0.96064 0.99901 0.90438 1.22131 1.00884 1.03110 0.95794 1.21067 0.96534 0.91100 1.01352 0.88109 1.21810 1.02955 1.00153 0.95316 1.23485 0.82033 0.91961 0.72482 1.90538 1.56867 1.47133 1.45647 1.86542 1.23954 1.34357 1.81500 1.19157 0.97024 0.74466 0.84877 0.90523 1.20904 1.09282 0.95119 1.31325 0.90466 1.24940 0.98094 0.95168 0.95444 1.70027 1.39456 0.99637 1.41142 0.86239 0.82128 0.77665 0.79974 1.20327 1.20818 1.19381 1.23594 0.97943 0.91478 0.89887 1.21289 1.07320 0.98210 0.92712 1.21715 1.07090 0.97465 0.97529 1.23591 1.09432 0.92627 0.90156 1.83985 1.64550 1.41094 1.17924 0.93066 0.92772 0.92452 0.91985 0.91510 0.93507 0.92856 0.89812 0.90931 0.91402 0.92175 0.92174 0.83694 0.85199 0.79955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.15 0.36 -1.05 16 2 C -0.12 -1.24 5.19 -26.73 -0.14 -1.38 16 3 C -0.07 -0.99 1.62 -90.62 -0.15 -1.13 16 4 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 5 C -0.16 -2.30 8.63 37.16 0.32 -1.97 16 6 C -0.08 -1.22 2.42 -91.77 -0.22 -1.44 16 7 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 8 C -0.15 -1.87 8.78 37.16 0.33 -1.55 16 9 C 0.46 9.38 6.93 36.01 0.25 9.63 16 10 O -0.51 -11.60 12.88 -18.75 -0.24 -11.84 16 11 O -0.35 -8.22 9.74 -42.01 -0.41 -8.62 16 12 C 0.30 7.91 2.41 -29.04 -0.07 7.84 16 13 H 0.08 2.18 7.16 -51.93 -0.37 1.81 16 14 C -0.53 -14.61 8.89 -34.44 -0.31 -14.91 16 15 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 16 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 17 N -0.87 -23.93 10.47 55.43 0.58 -23.35 16 18 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.02 0.57 5.67 -35.62 -0.20 0.37 16 23 C -0.18 -4.43 9.04 -39.70 -0.36 -4.79 16 24 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 25 C -0.09 -1.89 12.09 29.41 0.36 -1.53 16 26 O -0.18 -4.42 10.63 2.20 0.02 -4.40 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.54 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 34 H 0.08 1.47 5.52 -51.93 -0.29 1.19 16 35 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.07 0.68 6.32 -51.93 -0.33 0.35 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 39 H 0.15 3.76 7.49 -52.49 -0.39 3.37 16 40 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 41 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -30.23 335.21 -6.53 -36.76 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.15 Total: 5.84 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.36 Total: -15.29 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.58 Total: -23.35 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.63 Total: -24.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.23 -6.53 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.567 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds