Wall clock time and date at job start Tue Mar 31 2020 01:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 H 1.08993 * 109.47662 * 54.99793 * 3 2 1 5 5 C 1.52997 * 109.46817 * 294.99561 * 3 2 1 6 6 C 1.53006 * 109.46977 * 174.99830 * 3 2 1 7 7 H 1.08996 * 109.46884 * 60.00293 * 6 3 2 8 8 C 1.52997 * 109.47127 * 299.99541 * 6 3 2 9 9 C 1.50708 * 109.46735 * 179.97438 * 6 3 2 10 10 O 1.20820 * 119.99828 * 0.02562 * 9 6 3 11 11 O 1.34229 * 119.99602 * 180.02562 * 9 6 3 12 12 C 1.45196 * 116.99841 * 180.02562 * 11 9 6 13 13 H 1.09007 * 109.47114 * 29.99649 * 12 11 9 14 14 C 1.50697 * 109.47296 * 149.99625 * 12 11 9 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 12 11 16 16 C 1.37882 * 120.00015 * 179.97438 * 14 12 11 17 17 N 1.31510 * 119.99960 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46906 * 89.99939 * 18 16 14 20 20 H 1.48499 * 109.47093 * 209.99627 * 18 16 14 21 21 H 1.48493 * 109.47106 * 330.00205 * 18 16 14 22 22 C 1.50701 * 109.47178 * 269.99851 * 12 11 9 23 23 C 1.34516 * 125.79057 * 144.99586 * 22 12 11 24 24 C 1.41384 * 106.83757 * 180.02562 * 23 22 12 25 25 C 1.34511 * 106.84389 * 0.02562 * 24 23 22 26 26 O 1.34297 * 125.78839 * 324.69395 * 22 12 11 27 27 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47496 * 300.00063 * 1 2 3 29 29 H 1.09002 * 109.46894 * 60.00621 * 1 2 3 30 30 H 1.09000 * 109.47418 * 239.99449 * 2 1 3 31 31 H 1.09006 * 109.47378 * 119.99351 * 2 1 3 32 32 H 1.09004 * 109.47261 * 300.00059 * 5 3 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 5 3 2 34 34 H 1.09001 * 109.47289 * 180.02562 * 5 3 2 35 35 H 1.09002 * 109.47153 * 180.02562 * 8 6 3 36 36 H 1.09001 * 109.46832 * 60.00321 * 8 6 3 37 37 H 1.09004 * 109.47261 * 300.00303 * 8 6 3 38 38 H 0.97000 * 120.00300 * 180.02562 * 17 16 14 39 39 H 1.07994 * 126.58219 * 0.04245 * 23 22 12 40 40 H 1.08005 * 126.57350 * 179.97438 * 24 23 22 41 41 H 1.07996 * 125.79182 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6352 2.1264 -1.3074 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9054 -0.7160 8 6 3.9695 0.7605 1.4332 9 6 4.0671 2.8653 0.1251 10 8 3.2856 3.7822 0.0340 11 8 5.3827 3.1120 0.2259 12 6 5.7946 4.5043 0.2192 13 1 5.0053 5.1188 0.6524 14 6 7.0546 4.6593 1.0312 15 1 7.5014 3.7975 1.5045 16 6 7.6376 5.9012 1.1689 17 7 7.0938 6.9505 0.5921 18 14 9.1999 6.0931 2.1749 19 1 10.3814 5.9109 1.2938 20 1 9.2367 7.4496 2.7780 21 1 9.2236 5.0715 3.2522 22 6 6.0532 4.9449 -1.1985 23 6 5.8049 6.1682 -1.6999 24 6 6.1951 6.1410 -3.0585 25 6 6.6580 4.9026 -3.3063 26 8 6.5760 4.1845 -2.1743 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 2.0699 1.5874 -2.1492 33 1 0.5489 2.1251 -1.3970 34 1 1.9989 3.1540 -1.3077 35 1 5.0558 0.7622 1.5230 36 1 3.6062 -0.2672 1.4332 37 1 3.5348 1.2995 2.2750 38 1 7.5041 7.8241 0.6887 39 1 5.3878 7.0097 -1.1668 40 1 6.1327 6.9576 -3.7625 41 1 7.0371 4.5477 -4.2533 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:02 Heat of formation + Delta-G solvation = -108.233069 kcal Electronic energy + Delta-G solvation = -22807.822905 eV Core-core repulsion = 19460.481084 eV Total energy + Delta-G solvation = -3347.341820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.18607 -41.52590 -38.51496 -37.06166 -35.33100 -33.53470 -33.15131 -31.45167 -30.13727 -28.61607 -25.95967 -25.35590 -24.47660 -22.46581 -22.00117 -21.11265 -20.54854 -19.07096 -18.46047 -18.06927 -17.33980 -16.80207 -16.61050 -16.32343 -15.92727 -15.27791 -15.04731 -14.79699 -14.38801 -13.99801 -13.86915 -13.60833 -13.50443 -13.35452 -13.09664 -13.00541 -12.90035 -12.78574 -12.69008 -12.52378 -12.20037 -12.16134 -11.99373 -11.70565 -11.51631 -11.32546 -11.30370 -10.86479 -10.82483 -10.51795 -9.11963 -8.23680 -6.53889 1.09950 1.32715 1.38854 1.41333 1.51799 1.89687 2.11486 2.38913 2.42196 3.00362 3.61199 3.78186 3.89374 4.14326 4.21941 4.32351 4.38576 4.39665 4.55313 4.61013 4.64796 4.68137 4.76097 4.81802 4.90565 4.99884 5.08444 5.15326 5.16108 5.22069 5.30018 5.35239 5.38111 5.42691 5.46541 5.52737 5.60440 5.68840 5.86184 6.00521 6.47434 6.59241 6.96185 7.18961 8.71777 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.005375 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.009853 B = 5208.159461 C = 6115.616315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.070 4.070 4 H 0.062 0.938 5 C -0.160 4.160 6 C -0.074 4.074 7 H 0.118 0.882 8 C -0.141 4.141 9 C 0.446 3.554 10 O -0.540 6.540 11 O -0.357 6.357 12 C 0.302 3.698 13 H 0.039 0.961 14 C -0.556 4.556 15 H 0.074 0.926 16 C 0.024 3.976 17 N -0.891 5.891 18 Si 0.981 3.019 19 H -0.274 1.274 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.008 4.008 23 C -0.191 4.191 24 C -0.229 4.229 25 C -0.071 4.071 26 O -0.196 6.196 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.270 0.730 39 H 0.125 0.875 40 H 0.165 0.835 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.138 -12.178 -3.475 14.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.089 4.089 4 H 0.080 0.920 5 C -0.217 4.217 6 C -0.093 4.093 7 H 0.136 0.864 8 C -0.198 4.198 9 C 0.291 3.709 10 O -0.431 6.431 11 O -0.274 6.274 12 C 0.248 3.752 13 H 0.056 0.944 14 C -0.592 4.592 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.526 5.526 18 Si 0.803 3.197 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.184 1.184 22 C -0.058 4.058 23 C -0.211 4.211 24 C -0.248 4.248 25 C -0.138 4.138 26 O -0.093 6.093 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.183 0.817 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.245 -11.965 -3.478 14.413 hybrid contribution 0.753 1.427 0.298 1.641 sum -6.492 -10.538 -3.180 12.779 Atomic orbital electron populations 1.21808 0.95105 1.02281 1.01777 1.21630 0.96534 0.93469 1.03477 1.21036 0.90830 0.98326 0.98703 0.91981 1.22075 1.01967 1.00797 0.96875 1.21297 0.97637 0.87136 1.03236 0.86384 1.21839 1.02305 1.02004 0.93657 1.24784 0.80688 0.94241 0.71175 1.90530 1.57088 1.48755 1.46732 1.86534 1.26086 1.32680 1.82082 1.18702 0.95588 0.75384 0.85548 0.94376 1.21162 1.10033 0.95602 1.32444 0.90804 1.25829 1.01180 0.94590 0.96287 1.70165 1.40623 0.99943 1.41828 0.85215 0.77838 0.78036 0.78564 1.19935 1.19946 1.18445 1.23385 1.00040 0.92110 0.90284 1.21349 1.07605 0.97371 0.94754 1.22060 1.07177 0.99231 0.96311 1.24676 1.06712 0.91916 0.90449 1.83956 1.64814 1.41734 1.18820 0.91228 0.93134 0.92786 0.90739 0.89978 0.92434 0.91186 0.93937 0.92061 0.87417 0.92839 0.92037 0.85738 0.81749 0.74376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.11 -1.99 5.19 30.59 0.16 -1.83 16 3 C -0.07 -1.81 1.62 -10.79 -0.02 -1.82 16 4 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 5 C -0.16 -4.51 8.63 71.98 0.62 -3.88 16 6 C -0.07 -2.18 2.42 -11.54 -0.03 -2.21 16 7 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 8 C -0.14 -3.46 8.78 71.98 0.63 -2.82 16 9 C 0.45 19.15 6.93 71.24 0.49 19.64 16 10 O -0.54 -26.19 12.88 21.98 0.28 -25.91 16 11 O -0.36 -17.74 9.74 -48.78 -0.48 -18.22 16 12 C 0.30 16.96 2.41 29.10 0.07 17.03 16 13 H 0.04 2.38 7.16 -2.38 -0.02 2.37 16 14 C -0.56 -31.89 8.89 25.60 0.23 -31.67 16 15 H 0.07 4.14 7.81 -2.91 -0.02 4.12 16 16 C 0.02 1.34 5.30 84.66 0.45 1.79 16 17 N -0.89 -50.78 10.47 21.45 0.22 -50.55 16 18 Si 0.98 43.20 29.54 68.60 2.03 45.23 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 C -0.01 -0.42 5.67 24.83 0.14 -0.28 16 23 C -0.19 -9.94 9.04 22.19 0.20 -9.74 16 24 C -0.23 -9.64 10.91 22.19 0.24 -9.40 16 25 C -0.07 -2.81 12.09 66.97 0.81 -2.00 16 26 O -0.20 -9.68 10.63 0.92 0.01 -9.67 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.89 6.56 -2.39 -0.02 0.87 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.20 6.17 -2.38 -0.01 1.19 16 32 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 34 H 0.04 1.56 5.52 -2.39 -0.01 1.54 16 35 H 0.06 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.11 1.79 6.32 -2.39 -0.02 1.77 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.12 6.87 7.49 -2.91 -0.02 6.85 16 40 H 0.16 5.63 8.06 -2.91 -0.02 5.60 16 41 H 0.24 6.38 8.06 -2.91 -0.02 6.35 16 Total: -1.00 -70.02 335.21 7.78 -62.25 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 1.01 Total: 25.78 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 4.70 Total: -28.91 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.22 Total: -50.55 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.18 Total: -53.80 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -70.02 7.78 -62.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.985 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds