Wall clock time and date at job start Tue Mar 31 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 H 1.09001 * 109.47038 * 55.00849 * 3 2 1 5 5 C 1.52991 * 109.47314 * 295.00367 * 3 2 1 6 6 C 1.53003 * 109.46687 * 175.00150 * 3 2 1 7 7 H 1.09001 * 109.46810 * 60.00560 * 6 3 2 8 8 C 1.52998 * 109.47103 * 180.02562 * 6 3 2 9 9 C 1.50694 * 109.47391 * 300.00612 * 6 3 2 10 10 O 1.20824 * 119.99868 * 359.97438 * 9 6 3 11 11 O 1.34236 * 120.00143 * 180.02562 * 9 6 3 12 12 C 1.45194 * 117.00180 * 179.97438 * 11 9 6 13 13 H 1.09001 * 109.46972 * 330.00038 * 12 11 9 14 14 C 1.50706 * 109.47090 * 89.99719 * 12 11 9 15 15 H 1.07999 * 120.00196 * 240.00324 * 14 12 11 16 16 C 1.37879 * 119.99394 * 60.00192 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47555 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46814 * 210.00053 * 18 16 14 21 21 H 1.48496 * 109.47318 * 329.99545 * 18 16 14 22 22 C 1.50697 * 109.47474 * 209.99983 * 12 11 9 23 23 C 1.34511 * 125.79417 * 145.00338 * 22 12 11 24 24 C 1.41377 * 106.84412 * 180.02562 * 23 22 12 25 25 C 1.34519 * 106.83858 * 359.97438 * 24 23 22 26 26 O 1.34299 * 108.42045 * 359.73770 * 25 24 23 27 27 H 1.08994 * 109.47198 * 59.99604 * 1 2 3 28 28 H 1.08999 * 109.46631 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46759 * 299.99299 * 1 2 3 30 30 H 1.09003 * 109.46759 * 240.00701 * 2 1 3 31 31 H 1.08991 * 109.47685 * 120.00474 * 2 1 3 32 32 H 1.08998 * 109.47333 * 60.00209 * 5 3 2 33 33 H 1.09004 * 109.47186 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47569 * 299.99833 * 5 3 2 35 35 H 1.08997 * 109.47677 * 179.97438 * 8 6 3 36 36 H 1.08999 * 109.47304 * 300.00491 * 8 6 3 37 37 H 1.09004 * 109.47328 * 59.99799 * 8 6 3 38 38 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 39 39 H 1.08002 * 126.57651 * 0.03316 * 23 22 12 40 40 H 1.08002 * 126.58273 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.78649 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3072 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 4.0748 2.8869 0.1263 9 6 3.9636 0.7705 1.4132 10 8 3.1152 0.3340 2.1546 11 8 5.2613 0.6561 1.7370 12 6 5.5717 -0.0039 2.9925 13 1 4.7600 0.1622 3.7007 14 6 5.7364 -1.4830 2.7551 15 1 5.0928 -2.1864 3.2625 16 6 6.7088 -1.9382 1.8901 17 7 7.4922 -1.0817 1.2717 18 14 6.9124 -3.7716 1.5953 19 1 6.0553 -4.1881 0.4565 20 1 8.3331 -4.0673 1.2796 21 1 6.5111 -4.5167 2.8154 22 6 6.8514 0.5603 3.5537 23 6 7.1265 0.7401 4.8581 24 6 8.4271 1.2896 4.9305 25 6 8.8693 1.4123 3.6659 26 8 7.9131 0.9633 2.8366 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 0.5488 2.1253 -1.3967 33 1 1.9988 3.1542 -1.3074 34 1 2.0697 1.5877 -2.1492 35 1 5.1610 2.8883 0.2163 36 1 3.7863 3.3747 -0.8047 37 1 3.6401 3.4256 0.9684 38 1 8.1760 -1.4021 0.6629 39 1 6.4783 0.5088 5.6904 40 1 8.9629 1.5592 5.8286 41 1 9.8319 1.8011 3.3684 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123461339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:05 Heat of formation + Delta-G solvation = -88.493409 kcal Electronic energy + Delta-G solvation = -23012.562439 eV Core-core repulsion = 19666.076595 eV Total energy + Delta-G solvation = -3346.485844 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30136 -39.60415 -36.87387 -35.03545 -33.00218 -32.06515 -31.81643 -29.80500 -28.40611 -26.51067 -25.57422 -23.58798 -22.34396 -20.72703 -20.26687 -19.44264 -19.01434 -17.09683 -16.50423 -16.31307 -15.38665 -15.01310 -14.78812 -14.59781 -14.42273 -13.85080 -13.45087 -13.20780 -12.70718 -12.52167 -12.46010 -11.97016 -11.79737 -11.74730 -11.57432 -11.46478 -11.37136 -11.27273 -11.11820 -11.01555 -10.96385 -10.48605 -10.28884 -10.15839 -10.13355 -9.79672 -9.11370 -9.01758 -8.81341 -8.72374 -7.32856 -6.21167 -4.42854 2.92516 3.20223 3.26863 3.29724 3.33767 3.59451 3.94255 4.26006 4.27899 4.91922 5.09197 5.09326 5.28917 5.49977 5.57892 5.67682 5.69526 5.71878 5.80188 5.84311 5.94836 6.00889 6.04796 6.14419 6.20131 6.25551 6.28279 6.38121 6.42741 6.49707 6.58154 6.70295 6.81684 6.86264 6.94245 7.22328 7.50248 7.63834 7.82616 7.87538 8.42609 8.61157 9.04919 9.31154 10.77876 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.006385 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.665779 B = 4384.320173 C = 5371.592356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C -0.072 4.072 4 H 0.074 0.926 5 C -0.149 4.149 6 C -0.083 4.083 7 H 0.100 0.900 8 C -0.142 4.142 9 C 0.463 3.537 10 O -0.527 6.527 11 O -0.333 6.333 12 C 0.278 3.722 13 H 0.070 0.930 14 C -0.548 4.548 15 H 0.073 0.927 16 C 0.080 3.920 17 N -0.826 5.826 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.083 3.917 23 C -0.266 4.266 24 C -0.221 4.221 25 C -0.083 4.083 26 O -0.116 6.116 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 6.565 -3.216 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.206 4.206 6 C -0.102 4.102 7 H 0.118 0.882 8 C -0.199 4.199 9 C 0.307 3.693 10 O -0.419 6.419 11 O -0.248 6.248 12 C 0.226 3.774 13 H 0.087 0.913 14 C -0.584 4.584 15 H 0.091 0.909 16 C -0.130 4.130 17 N -0.459 5.459 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.029 3.971 23 C -0.285 4.285 24 C -0.240 4.240 25 C -0.152 4.152 26 O -0.008 6.008 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.113 6.457 -3.423 8.920 hybrid contribution 0.463 -1.188 0.178 1.287 sum -4.650 5.270 -3.245 7.741 Atomic orbital electron populations 1.21750 0.96494 1.00984 1.01039 1.21868 0.95438 0.96338 1.03733 1.20983 0.92696 0.97242 0.98161 0.90757 1.21943 1.01134 1.00347 0.97137 1.21049 0.96546 0.97468 0.95185 0.88227 1.21769 1.02454 0.93844 1.01873 1.23185 0.82224 0.76446 0.87444 1.90468 1.51959 1.47263 1.52216 1.86721 1.24760 1.70229 1.43049 1.18761 0.86385 0.90954 0.81285 0.91261 1.21239 1.18934 0.89735 1.28511 0.90867 1.25153 0.94596 0.98441 0.94824 1.70050 1.17369 1.33834 1.24661 0.86522 0.77533 0.84697 0.79017 1.20168 1.20824 1.19429 1.22845 0.89303 0.95442 0.89484 1.21164 0.98749 1.12537 0.96088 1.21488 0.97106 1.08190 0.97242 1.23785 0.95639 1.06307 0.89475 1.84416 1.21189 1.59519 1.35683 0.93336 0.93294 0.92977 0.92874 0.88687 0.92462 0.92505 0.92734 0.91062 0.91708 0.92661 0.92333 0.84988 0.85197 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.67 37.16 0.36 -1.53 16 2 C -0.14 -2.13 5.14 -26.73 -0.14 -2.27 16 3 C -0.07 -1.06 1.61 -90.62 -0.15 -1.21 16 4 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 5 C -0.15 -1.70 8.60 37.15 0.32 -1.38 16 6 C -0.08 -1.40 2.42 -91.77 -0.22 -1.63 16 7 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 8 C -0.14 -2.06 8.77 37.16 0.33 -1.74 16 9 C 0.46 10.15 6.90 36.00 0.25 10.40 16 10 O -0.53 -12.32 12.89 -18.75 -0.24 -12.56 16 11 O -0.33 -8.31 9.15 -42.02 -0.38 -8.70 16 12 C 0.28 7.21 2.58 -29.03 -0.07 7.13 16 13 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 14 C -0.55 -15.07 8.91 -34.44 -0.31 -15.38 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 17 N -0.83 -22.71 10.62 55.43 0.59 -22.12 16 18 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.08 2.07 5.59 -35.63 -0.20 1.87 16 23 C -0.27 -5.95 10.81 -39.71 -0.43 -6.37 16 24 C -0.22 -4.39 10.91 -39.70 -0.43 -4.83 16 25 C -0.08 -1.69 12.09 29.42 0.36 -1.34 16 26 O -0.12 -2.89 8.87 2.21 0.02 -2.87 16 27 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.82 5.42 -51.93 -0.28 1.54 16 32 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 33 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 34 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 36 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.13 2.69 8.06 -52.49 -0.42 2.26 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.18 2.91 8.06 -52.48 -0.42 2.48 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -30.01 335.55 -6.61 -36.62 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.19 Total: 4.89 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -0.43 Total: -16.19 kcal Atomic # 7 Polarization: -22.71 SS G_CDS: 0.59 Total: -22.12 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.61 Total: -24.13 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.01 -6.61 -36.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.869 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds