Wall clock time and date at job start Tue Mar 31 2020 01:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 H 1.09001 * 109.47038 * 55.00849 * 3 2 1 5 5 C 1.52991 * 109.47314 * 295.00367 * 3 2 1 6 6 C 1.53003 * 109.46687 * 175.00150 * 3 2 1 7 7 H 1.09001 * 109.46810 * 60.00560 * 6 3 2 8 8 C 1.52998 * 109.47103 * 180.02562 * 6 3 2 9 9 C 1.50694 * 109.47391 * 300.00612 * 6 3 2 10 10 O 1.20824 * 119.99868 * 359.97438 * 9 6 3 11 11 O 1.34236 * 120.00143 * 180.02562 * 9 6 3 12 12 C 1.45194 * 117.00180 * 179.97438 * 11 9 6 13 13 H 1.09001 * 109.46972 * 330.00038 * 12 11 9 14 14 C 1.50706 * 109.47090 * 89.99719 * 12 11 9 15 15 H 1.07999 * 120.00196 * 240.00324 * 14 12 11 16 16 C 1.37879 * 119.99394 * 60.00192 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47555 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46814 * 210.00053 * 18 16 14 21 21 H 1.48496 * 109.47318 * 329.99545 * 18 16 14 22 22 C 1.50697 * 109.47474 * 209.99983 * 12 11 9 23 23 C 1.34511 * 125.79417 * 145.00338 * 22 12 11 24 24 C 1.41377 * 106.84412 * 180.02562 * 23 22 12 25 25 C 1.34519 * 106.83858 * 359.97438 * 24 23 22 26 26 O 1.34299 * 108.42045 * 359.73770 * 25 24 23 27 27 H 1.08994 * 109.47198 * 59.99604 * 1 2 3 28 28 H 1.08999 * 109.46631 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46759 * 299.99299 * 1 2 3 30 30 H 1.09003 * 109.46759 * 240.00701 * 2 1 3 31 31 H 1.08991 * 109.47685 * 120.00474 * 2 1 3 32 32 H 1.08998 * 109.47333 * 60.00209 * 5 3 2 33 33 H 1.09004 * 109.47186 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.47569 * 299.99833 * 5 3 2 35 35 H 1.08997 * 109.47677 * 179.97438 * 8 6 3 36 36 H 1.08999 * 109.47304 * 300.00491 * 8 6 3 37 37 H 1.09004 * 109.47328 * 59.99799 * 8 6 3 38 38 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 39 39 H 1.08002 * 126.57651 * 0.03316 * 23 22 12 40 40 H 1.08002 * 126.58273 * 179.97438 * 24 23 22 41 41 H 1.08004 * 125.78649 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1266 -1.3072 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 4.0748 2.8869 0.1263 9 6 3.9636 0.7705 1.4132 10 8 3.1152 0.3340 2.1546 11 8 5.2613 0.6561 1.7370 12 6 5.5717 -0.0039 2.9925 13 1 4.7600 0.1622 3.7007 14 6 5.7364 -1.4830 2.7551 15 1 5.0928 -2.1864 3.2625 16 6 6.7088 -1.9382 1.8901 17 7 7.4922 -1.0817 1.2717 18 14 6.9124 -3.7716 1.5953 19 1 6.0553 -4.1881 0.4565 20 1 8.3331 -4.0673 1.2796 21 1 6.5111 -4.5167 2.8154 22 6 6.8514 0.5603 3.5537 23 6 7.1265 0.7401 4.8581 24 6 8.4271 1.2896 4.9305 25 6 8.8693 1.4123 3.6659 26 8 7.9131 0.9633 2.8366 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8898 32 1 0.5488 2.1253 -1.3967 33 1 1.9988 3.1542 -1.3074 34 1 2.0697 1.5877 -2.1492 35 1 5.1610 2.8883 0.2163 36 1 3.7863 3.3747 -0.8047 37 1 3.6401 3.4256 0.9684 38 1 8.1760 -1.4021 0.6629 39 1 6.4783 0.5088 5.6904 40 1 8.9629 1.5592 5.8286 41 1 9.8319 1.8011 3.3684 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123461339.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:04 Heat of formation + Delta-G solvation = -103.801231 kcal Electronic energy + Delta-G solvation = -23013.226236 eV Core-core repulsion = 19666.076595 eV Total energy + Delta-G solvation = -3347.149641 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.04352 -41.29889 -38.35359 -36.77027 -34.96546 -33.58521 -33.35401 -31.60847 -29.49033 -28.38029 -26.80295 -25.34552 -23.84118 -22.36619 -21.71290 -21.19867 -20.47095 -18.99642 -18.24577 -18.03678 -17.13935 -16.86732 -16.27052 -16.25758 -15.97568 -15.36084 -14.94625 -14.54898 -14.33828 -13.86255 -13.63444 -13.51719 -13.40723 -13.33647 -13.14502 -13.01608 -12.86912 -12.80234 -12.56584 -12.41916 -12.34072 -12.22638 -11.85140 -11.63515 -11.46992 -11.29124 -10.95894 -10.86978 -10.62089 -10.49431 -9.08148 -8.23249 -6.53567 1.18338 1.34581 1.36624 1.45396 1.58622 1.91414 2.27253 2.31687 2.59261 3.07381 3.67970 3.84915 3.94632 4.19490 4.31612 4.38878 4.39768 4.43774 4.49201 4.58452 4.64034 4.66100 4.75142 4.84636 4.95033 5.02249 5.11202 5.13184 5.16488 5.20323 5.24267 5.32275 5.38839 5.43479 5.52859 5.56398 5.64345 5.80034 5.90032 6.08958 6.50972 6.72075 7.16485 7.29376 8.74385 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.006385 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.665779 B = 4384.320173 C = 5371.592356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C -0.067 4.067 4 H 0.066 0.934 5 C -0.141 4.141 6 C -0.078 4.078 7 H 0.100 0.900 8 C -0.135 4.135 9 C 0.450 3.550 10 O -0.549 6.549 11 O -0.348 6.348 12 C 0.278 3.722 13 H 0.054 0.946 14 C -0.577 4.577 15 H 0.058 0.942 16 C 0.042 3.958 17 N -0.844 5.844 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.272 1.272 21 H -0.270 1.270 22 C 0.043 3.957 23 C -0.268 4.268 24 C -0.218 4.218 25 C -0.082 4.082 26 O -0.145 6.145 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.268 0.732 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 7.558 -4.257 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C -0.086 4.086 4 H 0.084 0.916 5 C -0.198 4.198 6 C -0.098 4.098 7 H 0.118 0.882 8 C -0.192 4.192 9 C 0.295 3.705 10 O -0.441 6.441 11 O -0.263 6.263 12 C 0.225 3.775 13 H 0.072 0.928 14 C -0.613 4.613 15 H 0.076 0.924 16 C -0.166 4.166 17 N -0.477 5.477 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.010 4.010 23 C -0.287 4.287 24 C -0.237 4.237 25 C -0.150 4.150 26 O -0.038 6.038 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -4.834 7.460 -4.462 9.946 hybrid contribution 0.368 -1.437 0.571 1.590 sum -4.467 6.022 -3.891 8.447 Atomic orbital electron populations 1.21704 0.94234 1.01588 1.02126 1.21824 0.97509 0.96716 1.01618 1.20990 0.90645 0.96851 1.00086 0.91576 1.21909 1.02329 1.00796 0.94792 1.21234 0.98378 0.98323 0.91816 0.88164 1.21760 1.01156 0.92312 1.03989 1.24340 0.81094 0.76111 0.88956 1.90453 1.52130 1.48112 1.53429 1.86699 1.26590 1.70387 1.42665 1.18565 0.86876 0.90735 0.81278 0.92826 1.21365 1.19607 0.90680 1.29626 0.92420 1.25781 0.94134 1.02319 0.94388 1.70156 1.17525 1.35214 1.24817 0.85631 0.77879 0.79935 0.78770 1.19743 1.19697 1.19469 1.22736 0.89582 0.98236 0.90404 1.21550 1.00172 1.11514 0.95476 1.21892 0.95939 1.07190 0.98668 1.24726 0.96045 1.04824 0.89450 1.84352 1.21952 1.60340 1.37160 0.90731 0.93044 0.93292 0.92638 0.93097 0.90788 0.90822 0.92093 0.92899 0.87899 0.92462 0.92235 0.83889 0.81240 0.75836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.67 71.98 0.70 -2.75 16 2 C -0.14 -4.36 5.14 30.60 0.16 -4.21 16 3 C -0.07 -1.91 1.61 -10.79 -0.02 -1.93 16 4 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 5 C -0.14 -2.78 8.60 71.98 0.62 -2.16 16 6 C -0.08 -2.65 2.42 -11.54 -0.03 -2.68 16 7 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 8 C -0.14 -3.78 8.77 71.98 0.63 -3.15 16 9 C 0.45 20.64 6.90 71.23 0.49 21.13 16 10 O -0.55 -27.23 12.89 21.97 0.28 -26.94 16 11 O -0.35 -18.26 9.15 -48.85 -0.45 -18.70 16 12 C 0.28 15.18 2.58 29.10 0.07 15.26 16 13 H 0.05 2.96 7.16 -2.39 -0.02 2.94 16 14 C -0.58 -33.21 8.91 25.60 0.23 -32.98 16 15 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 16 C 0.04 2.34 5.24 84.66 0.44 2.78 16 17 N -0.84 -47.26 10.62 21.45 0.23 -47.03 16 18 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 C 0.04 2.22 5.59 24.83 0.14 2.35 16 23 C -0.27 -11.98 10.81 22.19 0.24 -11.74 16 24 C -0.22 -8.22 10.91 22.19 0.24 -7.97 16 25 C -0.08 -3.22 12.09 66.97 0.81 -2.41 16 26 O -0.15 -7.26 8.87 0.88 0.01 -7.25 16 27 H 0.07 1.46 6.56 -2.39 -0.02 1.44 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 2.05 5.42 -2.39 -0.01 2.04 16 32 H 0.07 1.24 6.56 -2.39 -0.02 1.23 16 33 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 34 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.05 1.68 8.11 -2.39 -0.02 1.66 16 36 H 0.10 2.09 6.43 -2.39 -0.02 2.07 16 37 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.14 5.87 8.06 -2.91 -0.02 5.84 16 40 H 0.17 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.23 6.43 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -68.21 335.55 7.83 -60.38 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.01 Total: 24.44 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 4.73 Total: -30.46 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.23 Total: -47.03 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.16 Total: -52.90 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -68.21 7.83 -60.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123461339.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.423 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds