Wall clock time and date at job start Tue Mar 31 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47419 * 2 1 4 4 C 1.53003 * 109.47366 * 120.00280 * 2 1 3 5 5 C 1.52998 * 109.46761 * 59.99960 * 4 2 1 6 6 C 1.52992 * 109.46799 * 300.00002 * 4 2 1 7 7 C 1.50695 * 109.47114 * 179.97438 * 4 2 1 8 8 O 1.20828 * 120.00281 * 359.97438 * 7 4 2 9 9 O 1.34231 * 119.99995 * 180.02562 * 7 4 2 10 10 C 1.45196 * 117.00027 * 180.02562 * 9 7 4 11 11 H 1.08996 * 109.47442 * 329.99051 * 10 9 7 12 12 C 1.50708 * 109.46805 * 209.99482 * 10 9 7 13 13 H 1.08000 * 119.99718 * 272.63398 * 12 10 9 14 14 C 1.37873 * 119.99706 * 92.91335 * 12 10 9 15 15 N 1.31517 * 119.99612 * 180.17829 * 14 12 10 16 16 Si 1.86797 * 120.00326 * 0.17329 * 14 12 10 17 17 H 1.48497 * 109.47038 * 84.87222 * 16 14 12 18 18 H 1.48505 * 109.47321 * 204.87365 * 16 14 12 19 19 H 1.48497 * 109.47155 * 324.87232 * 16 14 12 20 20 C 1.50699 * 109.47335 * 89.99720 * 10 9 7 21 21 C 1.34522 * 125.78680 * 216.16470 * 20 10 9 22 22 C 1.41379 * 106.83634 * 179.88548 * 21 20 10 23 23 C 1.34512 * 106.84460 * 0.37438 * 22 21 20 24 24 O 1.34298 * 125.78947 * 36.47256 * 20 10 9 25 25 H 1.09001 * 109.46462 * 299.99873 * 1 2 3 26 26 H 1.08998 * 109.46700 * 59.99461 * 1 2 3 27 27 H 1.08995 * 109.46993 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46726 * 240.00553 * 2 1 3 29 29 H 1.09007 * 109.46793 * 60.00007 * 3 2 1 30 30 H 1.08998 * 109.47755 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47277 * 300.00652 * 3 2 1 32 32 H 1.09006 * 109.47266 * 180.02562 * 5 4 2 33 33 H 1.09005 * 109.46939 * 300.00010 * 5 4 2 34 34 H 1.09001 * 109.47725 * 59.99750 * 5 4 2 35 35 H 1.09000 * 109.47613 * 299.99227 * 6 4 2 36 36 H 1.08997 * 109.47444 * 60.00021 * 6 4 2 37 37 H 1.09009 * 109.47112 * 179.97438 * 6 4 2 38 38 H 0.97006 * 119.99935 * 180.02562 * 15 14 12 39 39 H 1.07997 * 126.57601 * 0.02884 * 21 20 10 40 40 H 1.08007 * 126.57578 * 180.16079 * 22 21 20 41 41 H 1.08001 * 125.79187 * 179.74562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2491 6 6 1.5301 -0.0001 2.4984 7 6 3.5471 -0.7218 1.2488 8 8 4.1512 -0.1993 0.3422 9 8 4.2183 -1.3036 2.2552 10 6 5.6682 -1.2656 2.1893 11 1 5.9845 -1.2563 1.1463 12 6 6.2343 -2.4825 2.8750 13 1 6.4217 -2.4649 3.9384 14 6 6.5181 -3.6163 2.1435 15 7 7.0088 -4.6794 2.7425 16 14 6.2057 -3.6424 0.3021 17 1 7.3744 -3.0619 -0.4065 18 1 6.0013 -5.0436 -0.1455 19 1 4.9929 -2.8426 -0.0056 20 6 6.1700 -0.0224 2.8776 21 6 7.2276 0.7158 2.4955 22 6 7.3364 1.7829 3.4165 23 6 6.3439 1.6283 4.3112 24 8 5.6406 0.5331 3.9798 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6768 1.9563 0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.8931 -2.6776 2.1393 33 1 0.4401 -2.1637 1.2491 34 1 1.8933 -2.6776 0.3590 35 1 1.8935 1.0275 2.4985 36 1 0.4402 -0.0001 2.4984 37 1 1.8931 -0.5143 3.3884 38 1 7.2088 -5.4770 2.2278 39 1 7.8689 0.5304 1.6465 40 1 8.0767 2.5692 3.4060 41 1 6.1464 2.2748 5.1534 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123464300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:16 Heat of formation + Delta-G solvation = -105.475940 kcal Electronic energy + Delta-G solvation = -23444.745945 eV Core-core repulsion = 20097.523683 eV Total energy + Delta-G solvation = -3347.222262 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.43728 -41.73719 -38.76276 -37.14139 -35.21332 -33.92523 -32.79618 -31.91082 -28.98075 -28.78421 -27.65759 -25.56353 -24.54303 -22.85955 -22.49039 -21.21579 -19.97787 -19.26344 -18.61811 -18.10515 -17.53386 -16.90430 -16.73537 -16.41977 -15.73308 -15.40075 -15.38733 -14.87646 -14.33765 -14.10313 -13.93520 -13.71830 -13.69583 -13.41315 -13.27289 -13.13440 -13.09070 -12.84934 -12.81919 -12.58936 -12.23770 -12.07773 -12.05784 -11.88732 -11.51024 -11.45518 -11.36840 -11.15916 -10.87001 -10.79331 -9.35445 -8.63909 -6.78658 0.83920 1.15191 1.19166 1.27690 1.36333 1.70162 1.94896 2.07301 2.23240 2.89094 3.53495 3.73106 3.78822 3.98823 4.08712 4.15896 4.21909 4.30569 4.36168 4.39220 4.56396 4.73886 4.79681 4.83576 4.86718 4.89233 4.91630 5.00040 5.03151 5.04302 5.06525 5.15333 5.19560 5.21679 5.31474 5.48110 5.55153 5.65245 5.77346 6.00966 6.29443 6.34047 6.90373 6.97729 8.49938 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.008458 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.616711 B = 3309.821001 C = 4607.768976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 C -0.159 4.159 4 C -0.055 4.055 5 C -0.142 4.142 6 C -0.137 4.137 7 C 0.447 3.553 8 O -0.545 6.545 9 O -0.362 6.362 10 C 0.262 3.738 11 H 0.065 0.935 12 C -0.522 4.522 13 H 0.048 0.952 14 C 0.052 3.948 15 N -0.898 5.898 16 Si 0.927 3.073 17 H -0.256 1.256 18 H -0.257 1.257 19 H -0.269 1.269 20 C -0.016 4.016 21 C -0.233 4.233 22 C -0.214 4.214 23 C -0.057 4.057 24 O -0.189 6.189 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.283 0.717 39 H 0.145 0.855 40 H 0.180 0.820 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.832 11.034 -3.021 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.092 4.092 3 C -0.216 4.216 4 C -0.056 4.056 5 C -0.199 4.199 6 C -0.193 4.193 7 C 0.292 3.708 8 O -0.437 6.437 9 O -0.278 6.278 10 C 0.210 3.790 11 H 0.083 0.917 12 C -0.558 4.558 13 H 0.067 0.933 14 C -0.153 4.153 15 N -0.534 5.534 16 Si 0.749 3.251 17 H -0.181 1.181 18 H -0.182 1.182 19 H -0.193 1.193 20 C -0.066 4.066 21 C -0.253 4.253 22 C -0.233 4.233 23 C -0.123 4.123 24 O -0.086 6.086 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.163 0.837 40 H 0.198 0.802 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.780 10.855 -3.110 16.318 hybrid contribution 1.006 -0.377 -0.751 1.311 sum -10.774 10.479 -3.861 15.517 Atomic orbital electron populations 1.21936 0.91459 1.03143 1.03281 1.20998 0.97906 0.95893 0.94445 1.22083 1.01512 0.95670 1.02308 1.20799 0.84940 0.99751 1.00090 1.21946 1.03667 0.92222 1.02100 1.21924 1.03435 0.99617 0.94367 1.24705 0.93264 0.73452 0.79343 1.90472 1.71794 1.43818 1.37597 1.86986 1.24515 1.69622 1.46702 1.19081 0.75821 0.88955 0.95169 0.91733 1.20777 1.41549 0.97157 0.96305 0.93328 1.25754 0.92296 0.94126 1.03160 1.69938 1.40815 1.03880 1.38801 0.86042 0.80157 0.79088 0.79794 1.18053 1.18158 1.19327 1.23054 0.97740 0.97012 0.88826 1.21749 1.00635 0.98300 1.04590 1.22085 1.02890 1.01520 0.96774 1.24943 0.94555 0.89704 1.03144 1.84031 1.50585 1.35886 1.38071 0.90738 0.91253 0.91157 0.92589 0.91758 0.93762 0.91406 0.92442 0.87195 0.93514 0.92451 0.87505 0.92608 0.90751 0.83701 0.80225 0.73824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.49 71.98 0.61 -1.87 16 2 C -0.07 -1.97 1.92 -10.79 -0.02 -1.99 16 3 C -0.16 -4.37 8.52 71.98 0.61 -3.75 16 4 C -0.05 -1.72 0.52 -52.93 -0.03 -1.74 16 5 C -0.14 -4.05 8.05 71.98 0.58 -3.47 16 6 C -0.14 -3.60 7.70 71.98 0.55 -3.04 16 7 C 0.45 19.44 6.04 71.23 0.43 19.87 16 8 O -0.55 -25.84 12.88 21.96 0.28 -25.55 16 9 O -0.36 -18.03 9.65 -48.95 -0.47 -18.50 16 10 C 0.26 13.90 1.93 29.10 0.06 13.95 16 11 H 0.07 3.51 4.65 -2.39 -0.01 3.50 16 12 C -0.52 -30.98 9.23 25.60 0.24 -30.74 16 13 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 14 C 0.05 2.99 5.47 84.65 0.46 3.46 16 15 N -0.90 -53.47 13.96 21.45 0.30 -53.17 16 16 Si 0.93 44.68 26.88 68.60 1.84 46.52 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -13.27 6.83 99.48 0.68 -12.59 16 20 C -0.02 -0.76 6.17 24.83 0.15 -0.61 16 21 C -0.23 -10.00 10.81 22.19 0.24 -9.76 16 22 C -0.21 -7.22 10.91 22.19 0.24 -6.98 16 23 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 24 O -0.19 -8.40 10.64 0.28 0.00 -8.40 16 25 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 28 H 0.06 1.69 8.10 -2.38 -0.02 1.67 16 29 H 0.06 1.56 6.43 -2.38 -0.02 1.55 16 30 H 0.04 1.56 5.52 -2.39 -0.01 1.55 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.82 8.11 -2.38 -0.02 1.80 16 33 H 0.11 2.17 6.43 -2.38 -0.02 2.15 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.53 6.43 -2.39 -0.02 1.52 16 36 H 0.11 1.96 6.43 -2.39 -0.02 1.94 16 37 H 0.05 1.65 8.12 -2.38 -0.02 1.63 16 38 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 39 H 0.15 5.89 8.06 -2.91 -0.02 5.87 16 40 H 0.18 4.49 8.06 -2.91 -0.02 4.46 16 41 H 0.25 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -72.67 330.94 7.89 -64.77 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 1.00 Total: 22.07 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 4.94 Total: -27.75 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.30 Total: -53.17 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.19 Total: -52.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.84 Total: 46.52 kcal Total: -72.67 7.89 -64.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.703 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds