Wall clock time and date at job start Tue Mar 31 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 5 5 C 1.53006 * 109.47127 * 59.99878 * 4 2 1 6 6 C 1.52999 * 109.46991 * 300.00562 * 4 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 4 2 1 8 8 O 1.20826 * 119.99685 * 359.97438 * 7 4 2 9 9 O 1.34219 * 120.00226 * 180.02562 * 7 4 2 10 10 C 1.45203 * 117.00018 * 180.02562 * 9 7 4 11 11 H 1.08999 * 109.47103 * 329.98919 * 10 9 7 12 12 C 1.50693 * 109.47400 * 89.99617 * 10 9 7 13 13 H 1.08004 * 119.99855 * 239.99999 * 12 10 9 14 14 C 1.37880 * 120.00421 * 59.99869 * 12 10 9 15 15 N 1.31517 * 119.99444 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00361 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46984 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47037 * 119.99787 * 16 14 12 19 19 H 1.48499 * 109.47135 * 240.00120 * 16 14 12 20 20 C 1.50699 * 109.47007 * 209.99510 * 10 9 7 21 21 C 1.34517 * 125.79212 * 144.99634 * 20 10 9 22 22 C 1.41381 * 106.84152 * 179.97438 * 21 20 10 23 23 C 1.34516 * 106.84365 * 0.02562 * 22 21 20 24 24 O 1.34306 * 108.41623 * 359.73074 * 23 22 21 25 25 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 26 26 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 27 27 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46812 * 240.00389 * 2 1 3 29 29 H 1.08996 * 109.47134 * 300.00694 * 3 2 1 30 30 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 31 31 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 33 33 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 34 34 H 1.09000 * 109.47050 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47160 * 179.97438 * 6 4 2 36 36 H 1.09002 * 109.46719 * 299.99711 * 6 4 2 37 37 H 1.08993 * 109.47839 * 59.99553 * 6 4 2 38 38 H 0.97006 * 119.99641 * 180.02562 * 15 14 12 39 39 H 1.07995 * 126.57329 * 0.03912 * 21 20 10 40 40 H 1.07997 * 126.57700 * 179.97438 * 22 21 20 41 41 H 1.07997 * 125.79024 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5471 -0.7207 1.2495 8 8 4.1512 -0.1975 0.3433 9 8 4.2182 -1.3023 2.2559 10 6 5.6683 -1.2632 2.1907 11 1 5.9849 -1.2534 1.1477 12 6 6.1688 -0.0198 2.8794 13 1 6.7462 0.7076 2.3281 14 6 5.8897 0.1892 4.2134 15 7 5.1870 -0.6968 4.8848 16 14 6.5096 1.7308 5.0670 17 1 7.2689 2.5617 4.0982 18 1 5.3552 2.5073 5.5861 19 1 7.3970 1.3493 6.1949 20 6 6.2349 -2.4798 2.8761 21 6 7.3426 -3.1470 2.5057 22 6 7.5041 -4.2127 3.4207 23 6 6.4851 -4.1333 4.2953 24 8 5.7227 -3.0784 3.9638 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 0.4401 -2.1638 1.2492 33 1 1.8934 -2.6776 0.3591 34 1 1.8931 -2.6775 2.1394 35 1 1.8930 -0.5142 3.3884 36 1 1.8933 1.0276 2.4984 37 1 0.4401 -0.0001 2.4985 38 1 4.9903 -0.5496 5.8232 39 1 7.9858 -2.9129 1.6704 40 1 8.2936 -4.9496 3.4176 41 1 6.3123 -4.8013 5.1261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123464303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:19 Heat of formation + Delta-G solvation = -81.846508 kcal Electronic energy + Delta-G solvation = -23485.605582 eV Core-core repulsion = 20139.407969 eV Total energy + Delta-G solvation = -3346.197613 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29892 -39.85486 -37.04053 -35.11861 -32.95913 -31.82186 -31.17638 -29.69752 -27.57775 -26.55288 -26.36470 -23.93954 -22.95791 -21.04832 -20.42932 -19.43035 -18.10313 -16.93158 -16.52923 -16.08488 -15.48173 -15.00064 -14.54103 -14.45025 -14.32292 -14.13966 -13.46322 -12.94756 -12.85896 -12.51293 -12.03439 -11.88009 -11.77893 -11.72763 -11.59490 -11.45553 -11.35353 -11.21554 -11.05274 -10.99127 -10.91169 -10.68201 -10.25028 -10.20199 -10.09188 -9.78411 -9.10456 -8.99704 -8.80827 -8.72447 -7.32584 -6.20914 -4.42162 2.92666 3.18624 3.27158 3.31212 3.34397 3.59377 3.93221 4.26191 4.27958 4.92357 5.09146 5.12195 5.28373 5.52745 5.56054 5.62391 5.79606 5.89316 5.91198 5.97030 5.99216 6.08358 6.13184 6.16098 6.25152 6.28386 6.31533 6.41739 6.50619 6.53797 6.61231 6.81709 6.82024 6.88704 6.95241 7.22626 7.50422 7.64312 7.83069 7.88334 8.42769 8.61870 9.06158 9.31700 10.78006 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015888 B = 0.007183 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.888378 B = 3896.894643 C = 4840.244469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.162 4.162 4 C -0.051 4.051 5 C -0.140 4.140 6 C -0.139 4.139 7 C 0.469 3.531 8 O -0.528 6.528 9 O -0.329 6.329 10 C 0.278 3.722 11 H 0.069 0.931 12 C -0.547 4.547 13 H 0.073 0.927 14 C 0.081 3.919 15 N -0.825 5.825 16 Si 0.894 3.106 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.083 3.917 21 C -0.266 4.266 22 C -0.221 4.221 23 C -0.083 4.083 24 O -0.116 6.116 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 -2.697 -3.774 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.219 4.219 4 C -0.053 4.053 5 C -0.197 4.197 6 C -0.196 4.196 7 C 0.312 3.688 8 O -0.420 6.420 9 O -0.244 6.244 10 C 0.226 3.774 11 H 0.087 0.913 12 C -0.583 4.583 13 H 0.091 0.909 14 C -0.129 4.129 15 N -0.458 5.458 16 Si 0.721 3.279 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.206 1.206 20 C 0.030 3.970 21 C -0.286 4.286 22 C -0.240 4.240 23 C -0.152 4.152 24 O -0.008 6.008 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.247 -2.536 -3.660 8.506 hybrid contribution 0.843 0.710 0.607 1.259 sum -6.404 -1.826 -3.053 7.326 Atomic orbital electron populations 1.21969 0.95285 1.01632 1.01667 1.20927 0.94886 0.96896 0.96415 1.22143 1.04392 0.94842 1.00506 1.20470 0.89444 0.97664 0.97680 1.21870 1.01002 0.93960 1.02883 1.21878 1.00288 1.00863 0.96612 1.23111 0.90569 0.75329 0.79780 1.90461 1.70667 1.43284 1.37585 1.86712 1.24594 1.68943 1.44159 1.18766 0.75158 0.89034 0.94491 0.91345 1.21265 1.36595 1.04861 0.95585 0.90874 1.25136 0.93855 0.96638 0.97279 1.70064 1.33651 1.32890 1.09174 0.86493 0.78912 0.82937 0.79604 1.19311 1.20520 1.20606 1.22847 0.94760 0.93069 0.86361 1.21166 1.01950 1.00136 1.05328 1.21485 1.01506 1.02008 0.99017 1.23780 0.95285 0.93454 1.02694 1.84415 1.45737 1.32922 1.37695 0.92310 0.92879 0.92523 0.90975 0.93582 0.93097 0.89557 0.91669 0.92719 0.91039 0.90671 0.92106 0.92117 0.92428 0.85007 0.85217 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.49 37.16 0.32 -1.42 16 2 C -0.07 -1.09 1.92 -90.62 -0.17 -1.27 16 3 C -0.16 -2.57 8.52 37.16 0.32 -2.26 16 4 C -0.05 -0.88 0.52 -155.66 -0.08 -0.96 16 5 C -0.14 -2.08 8.05 37.16 0.30 -1.78 16 6 C -0.14 -2.30 7.70 37.16 0.29 -2.02 16 7 C 0.47 10.33 6.23 36.00 0.22 10.56 16 8 O -0.53 -12.52 12.88 -18.75 -0.24 -12.76 16 9 O -0.33 -8.17 9.06 -41.98 -0.38 -8.55 16 10 C 0.28 7.18 2.58 -29.04 -0.07 7.11 16 11 H 0.07 1.75 7.15 -51.93 -0.37 1.38 16 12 C -0.55 -14.99 8.90 -34.44 -0.31 -15.29 16 13 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 14 C 0.08 2.18 5.24 -17.82 -0.09 2.09 16 15 N -0.82 -22.38 10.62 55.43 0.59 -21.79 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.08 2.07 5.59 -35.62 -0.20 1.87 16 21 C -0.27 -5.95 10.81 -39.70 -0.43 -6.38 16 22 C -0.22 -4.39 10.91 -39.70 -0.43 -4.82 16 23 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 24 O -0.12 -2.87 8.87 2.18 0.02 -2.85 16 25 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 28 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.77 6.43 -51.93 -0.33 0.44 16 31 H 0.09 1.66 5.52 -51.93 -0.29 1.37 16 32 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 36 H 0.06 1.05 6.43 -51.93 -0.33 0.72 16 37 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 41 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 330.13 15.07 4.97 4.97 Total: -1.00 -29.82 330.13 -6.06 -35.88 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.01 Total: 5.24 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 0.01 Total: -15.91 kcal Atomic # 7 Polarization: -22.38 SS G_CDS: 0.59 Total: -21.79 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.60 Total: -24.16 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.82 -6.06 -35.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.969 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds