Wall clock time and date at job start Tue Mar 31 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47056 * 2 1 4 4 C 1.52997 * 109.47452 * 120.00172 * 2 1 3 5 5 C 1.53006 * 109.47127 * 59.99878 * 4 2 1 6 6 C 1.52999 * 109.46991 * 300.00562 * 4 2 1 7 7 C 1.50697 * 109.47466 * 180.02562 * 4 2 1 8 8 O 1.20826 * 119.99685 * 359.97438 * 7 4 2 9 9 O 1.34219 * 120.00226 * 180.02562 * 7 4 2 10 10 C 1.45203 * 117.00018 * 180.02562 * 9 7 4 11 11 H 1.08999 * 109.47103 * 329.98919 * 10 9 7 12 12 C 1.50693 * 109.47400 * 89.99617 * 10 9 7 13 13 H 1.08004 * 119.99855 * 239.99999 * 12 10 9 14 14 C 1.37880 * 120.00421 * 59.99869 * 12 10 9 15 15 N 1.31517 * 119.99444 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00361 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.46984 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47037 * 119.99787 * 16 14 12 19 19 H 1.48499 * 109.47135 * 240.00120 * 16 14 12 20 20 C 1.50699 * 109.47007 * 209.99510 * 10 9 7 21 21 C 1.34517 * 125.79212 * 144.99634 * 20 10 9 22 22 C 1.41381 * 106.84152 * 179.97438 * 21 20 10 23 23 C 1.34516 * 106.84365 * 0.02562 * 22 21 20 24 24 O 1.34306 * 108.41623 * 359.73074 * 23 22 21 25 25 H 1.08998 * 109.47061 * 299.99160 * 1 2 3 26 26 H 1.09000 * 109.47360 * 59.99978 * 1 2 3 27 27 H 1.09002 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46812 * 240.00389 * 2 1 3 29 29 H 1.08996 * 109.47134 * 300.00694 * 3 2 1 30 30 H 1.09001 * 109.46997 * 59.99942 * 3 2 1 31 31 H 1.08992 * 109.47534 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46801 * 300.00272 * 5 4 2 33 33 H 1.09001 * 109.46998 * 59.99868 * 5 4 2 34 34 H 1.09000 * 109.47050 * 180.02562 * 5 4 2 35 35 H 1.09000 * 109.47160 * 179.97438 * 6 4 2 36 36 H 1.09002 * 109.46719 * 299.99711 * 6 4 2 37 37 H 1.08993 * 109.47839 * 59.99553 * 6 4 2 38 38 H 0.97006 * 119.99641 * 180.02562 * 15 14 12 39 39 H 1.07995 * 126.57329 * 0.03912 * 21 20 10 40 40 H 1.07997 * 126.57700 * 179.97438 * 22 21 20 41 41 H 1.07997 * 125.79024 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5471 -0.7207 1.2495 8 8 4.1512 -0.1975 0.3433 9 8 4.2182 -1.3023 2.2559 10 6 5.6683 -1.2632 2.1907 11 1 5.9849 -1.2534 1.1477 12 6 6.1688 -0.0198 2.8794 13 1 6.7462 0.7076 2.3281 14 6 5.8897 0.1892 4.2134 15 7 5.1870 -0.6968 4.8848 16 14 6.5096 1.7308 5.0670 17 1 7.2689 2.5617 4.0982 18 1 5.3552 2.5073 5.5861 19 1 7.3970 1.3493 6.1949 20 6 6.2349 -2.4798 2.8761 21 6 7.3426 -3.1470 2.5057 22 6 7.5041 -4.2127 3.4207 23 6 6.4851 -4.1333 4.2953 24 8 5.7227 -3.0784 3.9638 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 1.4426 0.0005 32 1 0.4401 -2.1638 1.2492 33 1 1.8934 -2.6776 0.3591 34 1 1.8931 -2.6775 2.1394 35 1 1.8930 -0.5142 3.3884 36 1 1.8933 1.0276 2.4984 37 1 0.4401 -0.0001 2.4985 38 1 4.9903 -0.5496 5.8232 39 1 7.9858 -2.9129 1.6704 40 1 8.2936 -4.9496 3.4176 41 1 6.3123 -4.8013 5.1261 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123464303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:19 Heat of formation + Delta-G solvation = -97.395654 kcal Electronic energy + Delta-G solvation = -23486.279844 eV Core-core repulsion = 20139.407969 eV Total energy + Delta-G solvation = -3346.871875 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.04100 -41.50568 -38.57126 -36.91667 -34.94097 -33.56849 -32.51515 -31.46298 -28.77964 -28.39789 -27.59352 -25.63231 -24.57810 -22.63903 -22.06911 -21.20172 -19.62191 -18.84911 -18.25808 -17.71736 -17.08583 -16.93211 -16.28194 -16.25352 -15.78370 -15.33829 -15.06253 -14.71299 -14.15139 -13.82703 -13.63869 -13.54048 -13.37912 -13.14489 -13.06744 -13.00598 -12.88181 -12.81548 -12.74740 -12.51587 -12.25269 -12.11552 -11.91452 -11.85013 -11.42251 -11.31442 -10.97235 -10.86283 -10.62657 -10.49367 -9.07902 -8.22136 -6.52024 1.18472 1.33904 1.35959 1.46547 1.59368 1.91306 2.26528 2.32166 2.59160 3.08072 3.63570 3.84384 3.88494 4.16677 4.32907 4.36670 4.39992 4.43925 4.48650 4.59977 4.64164 4.78770 4.86153 4.89958 4.92511 4.98342 5.07129 5.10904 5.13281 5.19843 5.23132 5.29925 5.37344 5.43883 5.54835 5.58655 5.61812 5.80761 5.90062 6.09895 6.51779 6.72170 7.17723 7.30553 8.75431 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.015888 B = 0.007183 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.888378 B = 3896.894643 C = 4840.244469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 C -0.161 4.161 4 C -0.049 4.049 5 C -0.135 4.135 6 C -0.133 4.133 7 C 0.454 3.546 8 O -0.553 6.553 9 O -0.342 6.342 10 C 0.278 3.722 11 H 0.051 0.949 12 C -0.576 4.576 13 H 0.056 0.944 14 C 0.045 3.955 15 N -0.840 5.840 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.272 1.272 20 C 0.044 3.956 21 C -0.269 4.269 22 C -0.218 4.218 23 C -0.082 4.082 24 O -0.144 6.144 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.268 0.732 39 H 0.143 0.857 40 H 0.170 0.830 41 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 -3.417 -3.227 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.218 4.218 4 C -0.050 4.050 5 C -0.192 4.192 6 C -0.189 4.189 7 C 0.299 3.701 8 O -0.446 6.446 9 O -0.257 6.257 10 C 0.225 3.775 11 H 0.069 0.931 12 C -0.612 4.612 13 H 0.074 0.926 14 C -0.164 4.164 15 N -0.473 5.473 16 Si 0.775 3.225 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.197 1.197 20 C -0.009 4.009 21 C -0.288 4.288 22 C -0.237 4.237 23 C -0.150 4.150 24 O -0.037 6.037 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.160 0.840 40 H 0.187 0.813 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.765 -3.263 -3.120 9.859 hybrid contribution 1.346 0.869 0.374 1.645 sum -7.419 -2.394 -2.745 8.265 Atomic orbital electron populations 1.21935 0.91709 1.03195 1.02985 1.20959 0.97636 0.95571 0.94693 1.22091 1.01662 0.96154 1.01849 1.20679 0.85360 0.99734 0.99197 1.21873 1.03324 0.91916 1.02066 1.21843 1.02735 0.99364 0.95006 1.24335 0.92811 0.74165 0.78771 1.90445 1.71778 1.44025 1.38307 1.86693 1.24022 1.69543 1.45462 1.18556 0.75743 0.89640 0.93568 0.93087 1.21353 1.37697 1.05727 0.96421 0.92626 1.25731 0.93950 0.99221 0.97457 1.70163 1.33952 1.33940 1.09260 0.85620 0.78630 0.79718 0.78492 1.19704 1.19612 1.19741 1.22729 0.96215 0.94207 0.87723 1.21549 1.00976 1.00418 1.05862 1.21885 1.02326 1.01767 0.97720 1.24721 0.94452 0.92405 1.03450 1.84352 1.47125 1.34382 1.37825 0.91407 0.91213 0.90816 0.91871 0.91365 0.92594 0.93733 0.87745 0.92590 0.92885 0.93355 0.93534 0.87942 0.92275 0.83961 0.81283 0.75839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.49 71.98 0.61 -2.15 16 2 C -0.07 -2.02 1.92 -10.79 -0.02 -2.04 16 3 C -0.16 -5.06 8.52 71.98 0.61 -4.44 16 4 C -0.05 -1.65 0.52 -52.93 -0.03 -1.67 16 5 C -0.13 -3.84 8.05 71.98 0.58 -3.26 16 6 C -0.13 -4.29 7.70 71.98 0.55 -3.74 16 7 C 0.45 20.96 6.23 71.23 0.44 21.40 16 8 O -0.55 -27.83 12.88 21.97 0.28 -27.54 16 9 O -0.34 -17.87 9.06 -48.68 -0.44 -18.31 16 10 C 0.28 15.18 2.58 29.10 0.07 15.25 16 11 H 0.05 2.83 7.15 -2.39 -0.02 2.82 16 12 C -0.58 -33.16 8.90 25.60 0.23 -32.93 16 13 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 14 C 0.05 2.49 5.24 84.65 0.44 2.93 16 15 N -0.84 -46.55 10.62 21.45 0.23 -46.32 16 16 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 C 0.04 2.26 5.59 24.83 0.14 2.40 16 21 C -0.27 -12.05 10.81 22.19 0.24 -11.81 16 22 C -0.22 -8.24 10.91 22.19 0.24 -7.99 16 23 C -0.08 -3.21 12.09 66.97 0.81 -2.40 16 24 O -0.14 -7.17 8.87 0.83 0.01 -7.17 16 25 H 0.07 1.22 6.43 -2.39 -0.02 1.21 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 28 H 0.06 1.93 8.10 -2.39 -0.02 1.91 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.67 6.43 -2.39 -0.02 1.65 16 31 H 0.04 1.78 5.52 -2.39 -0.01 1.77 16 32 H 0.10 2.14 6.43 -2.39 -0.02 2.13 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.71 8.11 -2.39 -0.02 1.69 16 35 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.05 1.61 6.43 -2.39 -0.02 1.60 16 37 H 0.10 2.42 6.43 -2.39 -0.02 2.41 16 38 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 39 H 0.14 5.87 8.06 -2.91 -0.02 5.85 16 40 H 0.17 4.93 8.06 -2.91 -0.02 4.91 16 41 H 0.23 6.42 8.06 -2.91 -0.02 6.40 16 Total: -1.00 -68.40 330.13 8.05 -60.35 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.02 Total: 23.99 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: 4.93 Total: -30.46 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.23 Total: -46.32 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.15 Total: -53.02 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.40 8.05 -60.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123464303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.050 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds