Wall clock time and date at job start Tue Mar 31 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47281 * 270.00290 * 3 2 1 5 5 H 1.48500 * 109.47023 * 30.00247 * 3 2 1 6 6 H 1.48501 * 109.46753 * 150.00051 * 3 2 1 7 7 C 1.37878 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00075 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99910 * 179.97438 * 7 2 1 10 10 O 1.42898 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.35994 * 117.00049 * 179.97438 * 10 9 7 12 12 C 1.38705 * 119.98015 * 179.97438 * 11 10 9 13 13 C 1.38108 * 120.01622 * 180.02562 * 12 11 10 14 14 C 1.38855 * 119.98370 * 359.97438 * 13 12 11 15 15 N 1.39940 * 120.01836 * 180.02562 * 14 13 12 16 16 C 1.46506 * 120.00088 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47035 * 270.00057 * 16 15 14 18 18 N 1.46896 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00153 * 359.97438 * 15 14 13 20 20 C 1.52998 * 109.47337 * 270.00299 * 19 15 14 21 21 O 1.42895 * 109.47444 * 65.00012 * 20 19 15 22 22 C 1.38856 * 119.96232 * 0.27638 * 14 13 12 23 23 C 1.38113 * 119.97799 * 359.47139 * 22 14 13 24 24 H 0.97003 * 120.00060 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47237 * 59.99853 * 9 7 2 26 26 H 1.09000 * 109.46672 * 300.00244 * 9 7 2 27 27 H 1.08002 * 119.98946 * 0.02562 * 12 11 10 28 28 H 1.08002 * 120.00353 * 179.97438 * 13 12 11 29 29 H 1.09004 * 109.47073 * 29.99739 * 16 15 14 30 30 H 1.09000 * 109.47212 * 149.99822 * 16 15 14 31 31 H 1.09004 * 109.46930 * 299.99770 * 17 16 15 32 32 H 1.09004 * 109.47059 * 59.99372 * 17 16 15 33 33 H 1.00901 * 111.00018 * 56.04383 * 18 17 16 34 34 H 1.00896 * 111.00304 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47057 * 30.00643 * 19 15 14 36 36 H 1.08999 * 109.47333 * 150.00202 * 19 15 14 37 37 H 1.09002 * 109.47245 * 185.00297 * 20 19 15 38 38 H 1.09005 * 109.47192 * 304.99494 * 20 19 15 39 39 H 0.96697 * 114.00103 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.01341 * 179.70194 * 22 14 13 41 41 H 1.08005 * 119.99068 * 180.25036 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0022 11 6 5.3360 -2.7196 -0.0034 12 6 5.8657 -4.0015 -0.0039 13 6 7.2348 -4.1834 -0.0046 14 6 8.0810 -3.0825 -0.0053 15 7 9.4684 -3.2659 -0.0065 16 6 10.3609 -2.1041 -0.0066 17 6 10.6704 -1.6989 -1.4492 18 7 11.5648 -0.5336 -1.4493 19 6 10.0283 -4.6197 -0.0065 20 6 10.2245 -5.0905 1.4359 21 8 8.9523 -5.2077 2.0760 22 6 7.5499 -1.7995 0.0006 23 6 6.1806 -1.6195 -0.0040 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8744 -0.6801 -0.8911 27 1 5.2074 -4.8577 -0.0039 28 1 7.6470 -5.1816 -0.0046 29 1 9.8768 -1.2740 0.5080 30 1 11.2884 -2.3584 0.5064 31 1 11.1544 -2.5290 -1.9638 32 1 9.7428 -1.4447 -1.9621 33 1 12.4052 -0.7228 -0.9239 34 1 11.7846 -0.2466 -2.3913 35 1 9.3443 -5.2957 -0.5196 36 1 10.9891 -4.6155 -0.5212 37 1 10.7225 -6.0601 1.4371 38 1 10.8368 -4.3670 1.9742 39 1 9.0004 -5.5022 2.9958 40 1 8.2074 -0.9427 0.0049 41 1 5.7673 -0.6216 -0.0036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163836644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:17 Heat of formation + Delta-G solvation = -47.485387 kcal Electronic energy + Delta-G solvation = -21815.510056 eV Core-core repulsion = 18503.095204 eV Total energy + Delta-G solvation = -3312.414852 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.69652 -38.20899 -36.68005 -35.80386 -34.06736 -32.69437 -30.95701 -29.71446 -29.21354 -27.94232 -25.89932 -23.60800 -22.66546 -22.18947 -21.11627 -19.84500 -18.05020 -17.57604 -16.86231 -16.49467 -16.24019 -15.78429 -15.11339 -14.70172 -14.56873 -14.41778 -14.27022 -14.04500 -13.90046 -13.16554 -13.05893 -12.91564 -12.60739 -12.30787 -11.99393 -11.87251 -11.68510 -11.46034 -11.32014 -11.06365 -10.98434 -10.36451 -10.26847 -10.10625 -9.87358 -9.20768 -9.07971 -8.84508 -8.61879 -8.44260 -6.58306 -6.15364 -4.15961 1.87646 2.21061 3.07947 3.24493 3.31347 3.32867 4.06811 4.32630 4.33880 4.41657 4.48507 4.69034 4.84453 4.87205 5.05436 5.07211 5.15868 5.19836 5.24570 5.34107 5.42614 5.56661 5.67047 5.78719 5.87336 5.95763 6.11425 6.43737 6.50682 6.62674 6.69468 6.77431 6.88518 7.02305 7.05601 7.19822 7.44893 7.52730 7.52996 7.74922 8.19027 8.70856 8.96309 9.42054 10.97231 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.004025 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.282515 B = 6955.045307 C = 8015.465095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.170 3.830 10 O -0.309 6.309 11 C 0.101 3.899 12 C -0.126 4.126 13 C -0.126 4.126 14 C 0.163 3.837 15 N -0.629 5.629 16 C 0.131 3.869 17 C 0.040 3.960 18 N -0.849 5.849 19 C 0.128 3.872 20 C 0.055 3.945 21 O -0.555 6.555 22 C -0.152 4.152 23 C -0.176 4.176 24 H 0.268 0.732 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.078 0.922 33 H 0.337 0.663 34 H 0.344 0.656 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.373 0.627 40 H 0.118 0.882 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.178 -7.560 0.319 28.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.103 0.897 9 C 0.096 3.904 10 O -0.222 6.222 11 C 0.053 3.947 12 C -0.145 4.145 13 C -0.148 4.148 14 C 0.066 3.934 15 N -0.344 5.344 16 C 0.007 3.993 17 C -0.092 4.092 18 N -0.379 5.379 19 C 0.004 3.996 20 C -0.024 4.024 21 O -0.360 6.360 22 C -0.174 4.174 23 C -0.195 4.195 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.219 0.781 40 H 0.135 0.865 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 26.147 -7.015 0.098 27.071 hybrid contribution 1.460 0.371 0.078 1.508 sum 27.606 -6.644 0.176 28.395 Atomic orbital electron populations 1.69863 1.06031 1.27264 1.49756 1.24705 0.94814 0.98684 0.94389 0.86889 0.80495 0.83712 0.79000 1.19683 1.20544 1.18887 1.20823 0.87731 0.95665 1.52044 0.89658 1.20891 0.96228 0.77833 0.95466 1.86137 1.16496 1.32189 1.87415 1.19094 0.84310 0.93552 0.97756 1.20183 0.94301 0.94946 1.05088 1.20343 0.91783 0.97307 1.05380 1.17467 0.82457 0.93400 1.00064 1.46057 1.02110 1.03556 1.82720 1.21184 0.93635 0.89204 0.95296 1.22323 0.97530 0.90933 0.98416 1.58616 1.21114 1.37883 1.20290 1.21359 0.99175 0.84637 0.94440 1.22749 0.86018 0.98559 0.95106 1.86677 1.28631 1.90982 1.29671 1.20430 0.94592 0.95075 1.07264 1.21102 0.93326 0.98669 1.06420 0.92183 0.96679 0.97166 0.85828 0.85859 0.89960 0.91942 0.95736 0.90386 0.85093 0.84371 0.90037 0.90291 0.93635 0.94058 0.78056 0.86458 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.82 9.99 -34.44 -0.34 -16.16 16 8 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 9 C 0.17 4.46 3.56 36.01 0.13 4.58 16 10 O -0.31 -7.79 10.12 -19.72 -0.20 -7.99 16 11 C 0.10 2.14 6.69 -39.24 -0.26 1.88 16 12 C -0.13 -2.31 9.98 -39.46 -0.39 -2.70 16 13 C -0.13 -1.98 8.06 -39.40 -0.32 -2.30 16 14 C 0.16 2.44 6.31 -83.70 -0.53 1.92 16 15 N -0.63 -7.10 2.59 -171.70 -0.44 -7.54 16 16 C 0.13 1.26 5.43 -4.04 -0.02 1.24 16 17 C 0.04 0.36 7.11 -3.83 -0.03 0.34 16 18 N -0.85 -6.55 9.62 -10.37 -0.10 -6.64 16 19 C 0.13 1.11 5.72 -4.04 -0.02 1.09 16 20 C 0.06 0.43 7.39 37.16 0.27 0.71 16 21 O -0.56 -5.65 11.48 -35.23 -0.40 -6.06 16 22 C -0.15 -2.50 9.21 -39.40 -0.36 -2.87 16 23 C -0.18 -3.43 9.03 -39.46 -0.36 -3.79 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.40 6.72 -51.93 -0.35 0.05 16 26 H 0.01 0.27 7.08 -51.93 -0.37 -0.10 16 27 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.12 1.70 5.51 -52.49 -0.29 1.42 16 29 H 0.08 0.92 6.19 -51.93 -0.32 0.60 16 30 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.34 1.97 8.99 -39.29 -0.35 1.61 16 34 H 0.34 2.22 9.08 -39.29 -0.36 1.86 16 35 H 0.08 0.76 6.20 -51.93 -0.32 0.44 16 36 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 37 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.37 2.36 9.12 45.56 0.42 2.78 16 40 H 0.12 1.74 6.13 -52.49 -0.32 1.42 16 41 H 0.12 2.47 6.29 -52.48 -0.33 2.14 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -34.16 334.37 -7.47 -41.63 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.14 Total: 5.43 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.33 Total: -13.89 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.23 Total: -40.98 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.60 Total: -14.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.16 -7.47 -41.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163836644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.851 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds