Wall clock time and date at job start Tue Mar 31 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47281 * 270.00290 * 3 2 1 5 5 H 1.48500 * 109.47023 * 30.00247 * 3 2 1 6 6 H 1.48501 * 109.46753 * 150.00051 * 3 2 1 7 7 C 1.37878 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00075 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99910 * 179.97438 * 7 2 1 10 10 O 1.42898 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.35994 * 117.00049 * 179.97438 * 10 9 7 12 12 C 1.38705 * 119.98015 * 179.97438 * 11 10 9 13 13 C 1.38108 * 120.01622 * 180.02562 * 12 11 10 14 14 C 1.38855 * 119.98370 * 359.97438 * 13 12 11 15 15 N 1.39940 * 120.01836 * 180.02562 * 14 13 12 16 16 C 1.46506 * 120.00088 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47035 * 270.00057 * 16 15 14 18 18 N 1.46896 * 109.47243 * 179.97438 * 17 16 15 19 19 C 1.46496 * 120.00153 * 359.97438 * 15 14 13 20 20 C 1.52998 * 109.47337 * 270.00299 * 19 15 14 21 21 O 1.42895 * 109.47444 * 65.00012 * 20 19 15 22 22 C 1.38856 * 119.96232 * 0.27638 * 14 13 12 23 23 C 1.38113 * 119.97799 * 359.47139 * 22 14 13 24 24 H 0.97003 * 120.00060 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47237 * 59.99853 * 9 7 2 26 26 H 1.09000 * 109.46672 * 300.00244 * 9 7 2 27 27 H 1.08002 * 119.98946 * 0.02562 * 12 11 10 28 28 H 1.08002 * 120.00353 * 179.97438 * 13 12 11 29 29 H 1.09004 * 109.47073 * 29.99739 * 16 15 14 30 30 H 1.09000 * 109.47212 * 149.99822 * 16 15 14 31 31 H 1.09004 * 109.46930 * 299.99770 * 17 16 15 32 32 H 1.09004 * 109.47059 * 59.99372 * 17 16 15 33 33 H 1.00901 * 111.00018 * 56.04383 * 18 17 16 34 34 H 1.00896 * 111.00304 * 179.97438 * 18 17 16 35 35 H 1.09001 * 109.47057 * 30.00643 * 19 15 14 36 36 H 1.08999 * 109.47333 * 150.00202 * 19 15 14 37 37 H 1.09002 * 109.47245 * 185.00297 * 20 19 15 38 38 H 1.09005 * 109.47192 * 304.99494 * 20 19 15 39 39 H 0.96697 * 114.00103 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.01341 * 179.70194 * 22 14 13 41 41 H 1.08005 * 119.99068 * 180.25036 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5414 -0.0022 11 6 5.3360 -2.7196 -0.0034 12 6 5.8657 -4.0015 -0.0039 13 6 7.2348 -4.1834 -0.0046 14 6 8.0810 -3.0825 -0.0053 15 7 9.4684 -3.2659 -0.0065 16 6 10.3609 -2.1041 -0.0066 17 6 10.6704 -1.6989 -1.4492 18 7 11.5648 -0.5336 -1.4493 19 6 10.0283 -4.6197 -0.0065 20 6 10.2245 -5.0905 1.4359 21 8 8.9523 -5.2077 2.0760 22 6 7.5499 -1.7995 0.0006 23 6 6.1806 -1.6195 -0.0040 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8744 -0.6801 -0.8911 27 1 5.2074 -4.8577 -0.0039 28 1 7.6470 -5.1816 -0.0046 29 1 9.8768 -1.2740 0.5080 30 1 11.2884 -2.3584 0.5064 31 1 11.1544 -2.5290 -1.9638 32 1 9.7428 -1.4447 -1.9621 33 1 12.4052 -0.7228 -0.9239 34 1 11.7846 -0.2466 -2.3913 35 1 9.3443 -5.2957 -0.5196 36 1 10.9891 -4.6155 -0.5212 37 1 10.7225 -6.0601 1.4371 38 1 10.8368 -4.3670 1.9742 39 1 9.0004 -5.5022 2.9958 40 1 8.2074 -0.9427 0.0049 41 1 5.7673 -0.6216 -0.0036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163836644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:16 Heat of formation + Delta-G solvation = -75.038331 kcal Electronic energy + Delta-G solvation = -21816.704841 eV Core-core repulsion = 18503.095204 eV Total energy + Delta-G solvation = -3313.609637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01809 -39.51174 -37.61187 -36.84488 -35.08226 -34.76030 -32.20276 -30.96788 -30.55674 -29.48831 -26.88755 -25.07791 -23.89983 -23.28781 -22.48336 -21.00400 -19.57369 -18.78286 -18.20394 -17.80961 -17.31669 -16.69063 -16.52735 -16.43085 -15.87858 -15.68038 -15.10879 -15.06832 -14.93937 -14.72470 -14.26593 -14.02821 -13.86332 -13.69416 -13.30472 -13.22152 -12.95017 -12.82099 -12.77894 -12.23040 -12.13564 -11.94954 -11.83777 -11.74341 -11.28583 -10.91426 -10.78037 -10.11429 -9.83310 -9.61595 -8.43491 -7.83455 -6.53504 0.50674 0.80447 1.30447 1.33336 1.44242 2.18526 2.24781 2.76354 2.88155 3.01609 3.52541 3.74653 3.93948 4.01038 4.06211 4.19370 4.31653 4.35758 4.38825 4.46650 4.52508 4.58945 4.63882 4.70198 4.80603 4.81379 4.82534 4.94302 5.10309 5.19417 5.25942 5.28779 5.44192 5.65272 5.81941 6.00503 6.18604 6.50041 6.50516 6.58259 6.63813 6.91758 7.00291 7.11949 8.73308 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020164 B = 0.004025 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.282515 B = 6955.045307 C = 8015.465095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.022 3.978 3 Si 0.950 3.050 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.554 4.554 8 H 0.035 0.965 9 C 0.186 3.814 10 O -0.340 6.340 11 C 0.049 3.951 12 C -0.128 4.128 13 C -0.122 4.122 14 C 0.184 3.816 15 N -0.623 5.623 16 C 0.129 3.871 17 C 0.049 3.951 18 N -0.856 5.856 19 C 0.118 3.882 20 C 0.056 3.944 21 O -0.586 6.586 22 C -0.158 4.158 23 C -0.182 4.182 24 H 0.276 0.724 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.350 0.650 34 H 0.351 0.649 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.388 0.612 40 H 0.135 0.865 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.571 -7.003 0.381 32.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.171 1.171 7 C -0.592 4.592 8 H 0.053 0.947 9 C 0.112 3.888 10 O -0.255 6.255 11 C 0.003 3.997 12 C -0.147 4.147 13 C -0.144 4.144 14 C 0.084 3.916 15 N -0.336 5.336 16 C 0.006 3.994 17 C -0.084 4.084 18 N -0.388 5.388 19 C -0.005 4.005 20 C -0.023 4.023 21 O -0.393 6.393 22 C -0.180 4.180 23 C -0.201 4.201 24 H 0.086 0.914 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.143 0.857 28 H 0.164 0.836 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.153 0.847 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 30.611 -6.495 0.168 31.293 hybrid contribution 0.265 0.025 0.066 0.274 sum 30.876 -6.470 0.234 31.547 Atomic orbital electron populations 1.70003 1.08101 1.29067 1.50179 1.25747 0.95817 1.03154 0.93031 0.85686 0.79513 0.77619 0.80116 1.18019 1.19083 1.17139 1.21054 0.90138 0.94397 1.53585 0.94684 1.20517 0.93534 0.79034 0.95757 1.86046 1.19358 1.31175 1.88938 1.19404 0.82771 0.95369 1.02139 1.20363 0.95668 0.93974 1.04700 1.20516 0.90575 0.98679 1.04651 1.17588 0.84535 0.92544 0.96966 1.46308 1.00653 1.05546 1.81119 1.21313 0.94119 0.88121 0.95883 1.22127 0.96864 0.91754 0.97608 1.58563 1.21772 1.37330 1.21178 1.21705 1.00403 0.82745 0.95646 1.22806 0.85359 1.00096 0.94060 1.86613 1.30294 1.91288 1.31129 1.20562 0.93507 0.96536 1.07364 1.21110 0.94521 0.97684 1.06788 0.91432 0.96262 0.96339 0.85709 0.83611 0.91514 0.89038 0.94492 0.93019 0.83655 0.83528 0.90656 0.87044 0.91047 0.93499 0.76366 0.84696 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 2 C 0.02 1.31 5.47 84.65 0.46 1.77 16 3 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.55 -35.21 9.99 25.60 0.26 -34.95 16 8 H 0.03 2.48 8.06 -2.91 -0.02 2.46 16 9 C 0.19 10.11 3.56 71.24 0.25 10.37 16 10 O -0.34 -18.12 10.12 -93.49 -0.95 -19.06 16 11 C 0.05 2.17 6.69 22.49 0.15 2.32 16 12 C -0.13 -4.76 9.98 22.35 0.22 -4.53 16 13 C -0.12 -3.67 8.06 22.39 0.18 -3.49 16 14 C 0.18 5.15 6.31 38.14 0.24 5.39 16 15 N -0.62 -11.98 2.59 -697.12 -1.80 -13.79 16 16 C 0.13 2.03 5.43 86.38 0.47 2.50 16 17 C 0.05 0.73 7.11 86.30 0.61 1.35 16 18 N -0.86 -10.62 9.62 -186.71 -1.80 -12.42 16 19 C 0.12 1.56 5.72 86.38 0.49 2.06 16 20 C 0.06 0.65 7.39 71.98 0.53 1.18 16 21 O -0.59 -10.31 11.48 -148.98 -1.71 -12.02 16 22 C -0.16 -5.02 9.21 22.39 0.21 -4.81 16 23 C -0.18 -7.15 9.03 22.35 0.20 -6.95 16 24 H 0.28 16.06 8.31 -92.71 -0.77 15.29 16 25 H 0.02 1.03 6.72 -2.39 -0.02 1.01 16 26 H 0.02 0.97 7.08 -2.39 -0.02 0.96 16 27 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.15 3.69 5.51 -2.91 -0.02 3.68 16 29 H 0.07 1.30 6.19 -2.38 -0.01 1.29 16 30 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 31 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.35 2.83 8.99 -89.69 -0.81 2.03 16 34 H 0.35 3.58 9.08 -89.70 -0.81 2.77 16 35 H 0.08 1.14 6.20 -2.39 -0.01 1.12 16 36 H 0.11 0.81 8.07 -2.39 -0.02 0.79 16 37 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.39 4.00 9.12 -74.06 -0.68 3.33 16 40 H 0.14 3.77 6.13 -2.91 -0.02 3.75 16 41 H 0.12 4.62 6.29 -2.91 -0.02 4.61 16 Total: -1.00 -78.04 334.37 -1.07 -79.11 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -1.28 Total: 19.01 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.28 Total: -27.81 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.30 Total: -85.55 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -2.66 Total: -31.08 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -78.04 -1.07 -79.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163836644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds