Wall clock time and date at job start Tue Mar 31 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32309 * 120.41449 * 2 1 4 4 C 1.32440 * 120.76499 * 180.02562 * 3 2 1 5 5 N 1.38539 * 119.18984 * 179.97438 * 4 3 2 6 6 C 1.46955 * 110.99813 * 303.80412 * 5 4 3 7 7 C 1.53049 * 109.36381 * 176.81140 * 6 5 4 8 8 N 1.46957 * 109.36629 * 58.39869 * 7 6 5 9 9 C 1.46900 * 111.00078 * 176.81604 * 8 7 6 10 10 C 1.50700 * 109.47616 * 58.97452 * 9 8 7 11 11 H 1.07999 * 119.99543 * 5.01506 * 10 9 8 12 12 C 1.37869 * 120.00626 * 185.00787 * 10 9 8 13 13 N 1.31516 * 119.99581 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00459 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47050 * 60.00260 * 14 12 10 16 16 H 1.48497 * 109.47132 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47025 * 300.00565 * 14 12 10 18 18 C 1.46956 * 110.87847 * 300.68268 * 8 7 6 19 19 C 1.46957 * 111.00253 * 180.02562 * 5 4 3 20 20 N 1.32475 * 121.62452 * 0.02562 * 4 3 2 21 21 C 1.32283 * 120.76080 * 359.95471 * 20 4 3 22 22 C 1.38758 * 120.41561 * 180.02562 * 2 1 3 23 23 F 1.35105 * 120.74316 * 359.70640 * 22 2 1 24 24 H 1.09001 * 109.47372 * 269.98052 * 1 2 3 25 25 H 1.09000 * 109.47136 * 29.98303 * 1 2 3 26 26 H 1.09003 * 109.47088 * 149.98018 * 1 2 3 27 27 H 1.08998 * 109.48963 * 296.77645 * 6 5 4 28 28 H 1.08998 * 109.49041 * 56.84315 * 6 5 4 29 29 H 1.09008 * 109.48937 * 298.43084 * 7 6 5 30 30 H 1.09000 * 109.49413 * 178.37123 * 7 6 5 31 31 H 1.09001 * 109.47195 * 178.97830 * 9 8 7 32 32 H 1.08999 * 109.47116 * 298.97755 * 9 8 7 33 33 H 0.97003 * 119.99877 * 179.97438 * 13 12 10 34 34 H 1.08998 * 109.48970 * 299.35070 * 18 8 7 35 35 H 1.09007 * 109.48934 * 179.29153 * 18 8 7 36 36 H 1.08996 * 109.48726 * 303.15869 * 19 5 4 37 37 H 1.09005 * 109.48914 * 63.19985 * 19 5 4 38 38 H 1.07997 * 120.41207 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1768 1.1410 0.0000 4 6 3.5012 1.1491 -0.0005 5 7 4.1694 2.3627 -0.0010 6 6 3.7544 3.1919 -1.1411 7 6 4.4538 4.5509 -1.0614 8 7 5.9096 4.3505 -1.0619 9 6 6.6181 5.6374 -1.0624 10 6 6.2195 6.4309 0.1552 11 1 5.5742 5.9891 0.9001 12 6 6.6786 7.7206 0.3183 13 7 7.4641 8.2586 -0.5890 14 14 6.1850 8.7039 1.8279 15 1 6.6496 8.0006 3.0504 16 1 6.8057 10.0515 1.7656 17 1 4.7069 8.8415 1.8675 18 6 6.3246 3.5213 0.0781 19 6 5.6253 2.1623 -0.0022 20 7 4.2027 0.0254 -0.0015 21 6 3.5967 -1.1505 -0.0012 22 6 2.2095 -1.1966 -0.0005 23 9 1.5578 -2.3801 0.0049 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3633 -0.8898 -0.5142 27 1 4.0298 2.6952 -2.0714 28 1 2.6744 3.3364 -1.1116 29 1 4.1570 5.0594 -0.1439 30 1 4.1698 5.1572 -1.9215 31 1 7.6935 5.4600 -1.0445 32 1 6.3569 6.1956 -1.9614 33 1 7.7868 9.1662 -0.4745 34 1 6.0491 4.0179 1.0084 35 1 7.4046 3.3768 0.0487 36 1 5.9095 1.5560 0.8578 37 1 5.9217 1.6537 -0.9196 38 1 4.1742 -2.0631 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:55 Heat of formation + Delta-G solvation = 29.779133 kcal Electronic energy + Delta-G solvation = -21792.631824 eV Core-core repulsion = 18392.399859 eV Total energy + Delta-G solvation = -3400.231965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.16384 -41.37267 -38.69228 -35.50353 -34.58705 -32.57112 -31.33089 -30.55664 -28.80101 -27.66981 -25.24592 -24.19066 -23.01475 -22.54089 -21.50177 -19.32901 -18.47221 -17.65033 -17.48628 -16.46832 -16.27109 -15.19447 -14.99609 -14.71187 -14.44099 -14.29969 -14.06723 -13.93332 -13.51334 -13.24943 -13.18373 -12.84324 -12.69743 -12.07664 -11.95956 -11.73940 -11.13604 -11.01968 -10.89468 -10.79256 -10.64730 -10.50228 -10.19066 -9.97777 -9.80731 -9.61092 -9.30161 -8.44490 -8.28791 -7.25637 -6.04487 -4.13638 0.58716 0.74782 3.04157 3.29106 3.33875 3.36964 3.42140 3.66127 3.83575 4.24966 4.40170 4.50945 4.65833 4.96310 5.08832 5.21143 5.25980 5.28680 5.34850 5.45841 5.58908 5.67199 5.75390 5.88898 5.98310 6.09886 6.18823 6.47271 6.56865 6.65204 6.77012 6.78745 7.16966 7.22410 7.49585 7.87214 7.93359 7.97675 8.19547 8.25913 8.96171 9.53598 11.00800 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.003677 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.327605 B = 7613.767597 C = 7924.332197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.181 3.819 3 N -0.510 5.510 4 C 0.499 3.501 5 N -0.453 5.453 6 C 0.071 3.929 7 C 0.063 3.937 8 N -0.544 5.544 9 C 0.188 3.812 10 C -0.552 4.552 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.059 3.941 19 C 0.073 3.927 20 N -0.532 5.532 21 C 0.158 3.842 22 C -0.057 4.057 23 F -0.126 7.126 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.926 -18.183 -0.091 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 N -0.229 5.229 4 C 0.144 3.856 5 N -0.172 5.172 6 C -0.055 4.055 7 C -0.066 4.066 8 N -0.269 5.269 9 C 0.062 3.938 10 C -0.591 4.591 11 H 0.076 0.924 12 C -0.137 4.137 13 N -0.530 5.530 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.070 4.070 19 C -0.054 4.054 20 N -0.251 5.251 21 C -0.011 4.011 22 C -0.083 4.083 23 F -0.105 7.105 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.286 -17.037 -0.170 19.902 hybrid contribution -0.710 -0.297 1.191 1.418 sum -10.996 -17.333 1.021 20.552 Atomic orbital electron populations 1.20781 0.86940 1.04547 1.04199 1.21765 0.98154 0.86406 0.90585 1.67958 1.08256 1.28657 1.17980 1.21323 0.86177 0.89231 0.88857 1.58640 1.08571 1.08448 1.41549 1.22439 1.00794 0.94015 0.88222 1.21987 0.89324 0.92897 1.02374 1.62750 1.04593 1.19334 1.40199 1.19740 0.93840 0.83450 0.96732 1.21716 1.30935 0.99034 1.07377 0.92365 1.24949 0.94806 0.97634 0.96279 1.69934 1.33532 1.15170 1.34322 0.86698 0.78869 0.79231 0.83489 1.20252 1.21222 1.20212 1.22051 0.98945 0.91255 0.94752 1.22283 0.82196 0.98574 1.02346 1.68511 1.40328 0.97792 1.18494 1.23232 0.90074 0.97017 0.90820 1.19076 0.92761 0.82808 1.13692 1.91492 1.81011 1.43464 1.94548 0.89192 0.89177 0.89799 0.93395 0.89235 0.92673 0.90287 0.95276 0.94585 0.92730 0.93218 0.90379 0.89882 0.92386 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.06 36.01 0.36 -0.51 16 2 C 0.18 2.13 6.83 -82.19 -0.56 1.56 16 3 N -0.51 -7.42 9.65 -10.09 -0.10 -7.51 16 4 C 0.50 7.76 7.18 -322.71 -2.32 5.45 16 5 N -0.45 -7.63 4.78 -175.22 -0.84 -8.46 16 6 C 0.07 1.17 5.46 -3.77 -0.02 1.15 16 7 C 0.06 1.22 5.24 -3.77 -0.02 1.20 16 8 N -0.54 -11.43 4.92 -235.91 -1.16 -12.59 16 9 C 0.19 4.72 5.14 -4.98 -0.03 4.70 16 10 C -0.55 -14.90 7.66 -34.44 -0.26 -15.17 16 11 H 0.06 1.58 5.82 -52.49 -0.31 1.27 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.06 1.13 5.32 -3.77 -0.02 1.11 16 19 C 0.07 1.20 4.77 -3.77 -0.02 1.18 16 20 N -0.53 -7.49 8.69 -13.86 -0.12 -7.61 16 21 C 0.16 1.74 11.29 -17.15 -0.19 1.55 16 22 C -0.06 -0.63 7.31 -39.18 -0.29 -0.91 16 23 F -0.13 -1.26 16.61 2.25 0.04 -1.22 16 24 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.55 7.72 -51.93 -0.40 0.15 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.38 7.64 -51.93 -0.40 0.98 16 29 H 0.06 1.18 6.62 -51.92 -0.34 0.84 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.05 1.05 6.78 -51.93 -0.35 0.70 16 35 H 0.08 1.45 8.12 -51.92 -0.42 1.03 16 36 H 0.08 1.29 7.80 -51.93 -0.41 0.89 16 37 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 38 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -29.89 314.22 -10.32 -40.21 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.14 Total: -1.74 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -3.46 Total: 3.04 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -1.48 Total: -61.35 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.89 -10.32 -40.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.988 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds