Wall clock time and date at job start Tue Mar 31 2020 01:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31753 * 119.05873 * 2 1 4 4 C 1.32580 * 121.02283 * 180.02562 * 3 2 1 5 5 C 1.38271 * 119.16961 * 359.73717 * 4 3 2 6 6 F 1.35102 * 120.85268 * 180.25262 * 5 4 3 7 7 C 1.39813 * 118.29916 * 0.50183 * 5 4 3 8 8 N 1.38675 * 120.54357 * 179.78031 * 7 5 4 9 9 C 1.46954 * 110.99880 * 179.71346 * 8 7 5 10 10 C 1.53055 * 109.36378 * 183.18550 * 9 8 7 11 11 N 1.46953 * 109.36514 * 301.60308 * 10 9 8 12 12 C 1.46906 * 110.99875 * 183.18861 * 11 10 9 13 13 C 1.50699 * 109.47140 * 170.00105 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99892 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 120.00241 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47135 * 90.00125 * 17 15 13 19 19 H 1.48503 * 109.47215 * 210.00315 * 17 15 13 20 20 H 1.48508 * 109.46958 * 330.00276 * 17 15 13 21 21 C 1.46951 * 110.88066 * 59.32047 * 11 10 9 22 22 C 1.46956 * 111.00211 * 303.51559 * 8 7 5 23 23 N 1.31780 * 119.06110 * 180.02562 * 2 1 3 24 24 H 1.08999 * 109.47121 * 269.98606 * 1 2 3 25 25 H 1.09000 * 109.46986 * 29.98064 * 1 2 3 26 26 H 1.08999 * 109.47348 * 149.97943 * 1 2 3 27 27 H 1.08006 * 120.41048 * 179.97438 * 4 3 2 28 28 H 1.09005 * 109.48381 * 63.22364 * 9 8 7 29 29 H 1.08996 * 109.51190 * 303.16693 * 9 8 7 30 30 H 1.09003 * 109.48634 * 181.63672 * 10 9 8 31 31 H 1.09004 * 109.48678 * 61.57576 * 10 9 8 32 32 H 1.09004 * 109.47040 * 290.00043 * 12 11 10 33 33 H 1.09000 * 109.47033 * 49.99995 * 12 11 10 34 34 H 0.97002 * 119.99998 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.48678 * 60.64401 * 21 11 10 36 36 H 1.09004 * 109.48825 * 180.70927 * 21 11 10 37 37 H 1.08998 * 109.48856 * 296.78146 * 22 8 7 38 38 H 1.09004 * 109.48212 * 56.82287 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1517 0.0000 4 6 3.4719 1.1971 -0.0005 5 6 4.1868 0.0136 0.0045 6 9 5.5378 0.0202 0.0093 7 6 3.4759 -1.1903 -0.0009 8 7 4.1458 -2.4044 -0.0008 9 6 3.1991 -3.5283 0.0000 10 6 3.9748 -4.8453 0.0803 11 7 4.8970 -4.9379 -1.0601 12 6 5.6067 -6.2242 -1.0600 13 6 6.3509 -6.3873 -2.3602 14 1 6.3013 -5.6132 -3.1117 15 6 7.0943 -7.5254 -2.5909 16 7 7.7442 -7.6675 -3.7254 17 14 7.1796 -8.8647 -1.2915 18 1 6.0800 -9.8383 -1.5113 19 1 8.4863 -9.5640 -1.3863 20 1 7.0403 -8.2565 0.0561 21 6 5.8437 -3.8141 -1.0607 22 6 5.0681 -2.4972 -1.1412 23 7 2.1471 -1.1519 -0.0005 24 1 -0.3633 -0.0002 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5141 27 1 3.9864 2.1468 -0.0009 28 1 2.6104 -3.5084 -0.9172 29 1 2.5350 -3.4444 0.8602 30 1 3.2759 -5.6813 0.0517 31 1 4.5422 -4.8769 1.0105 32 1 6.3140 -6.2489 -0.2310 33 1 4.8878 -7.0358 -0.9486 34 1 8.2669 -8.4683 -3.8879 35 1 6.4324 -3.8340 -0.1435 36 1 6.5075 -3.8982 -1.9212 37 1 4.5006 -2.4655 -2.0712 38 1 5.7667 -1.6609 -1.1127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056400.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:05 Heat of formation + Delta-G solvation = 30.850905 kcal Electronic energy + Delta-G solvation = -21973.212097 eV Core-core repulsion = 18573.026608 eV Total energy + Delta-G solvation = -3400.185489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.13576 -41.34584 -39.05780 -35.88349 -33.56456 -32.81009 -31.93611 -30.80954 -28.73830 -28.17261 -25.78975 -24.16516 -23.30135 -22.28321 -21.22225 -19.61309 -18.47978 -17.76601 -17.28547 -16.77418 -16.31915 -15.42416 -15.17332 -14.72876 -14.62549 -14.49007 -14.17645 -13.91089 -13.71168 -13.60288 -13.06655 -12.65149 -12.63220 -12.37259 -12.09351 -11.78453 -11.70515 -11.22630 -11.11659 -10.96039 -10.78368 -10.51369 -10.25578 -9.91909 -9.72135 -9.45691 -9.32470 -8.61551 -8.49022 -7.50484 -6.09805 -4.07963 0.53377 0.73810 3.07507 3.25671 3.33442 3.35096 3.37218 3.70091 3.74958 3.99363 4.38051 4.46382 4.62370 4.82621 5.07721 5.11444 5.21474 5.26523 5.28724 5.33555 5.46203 5.56676 5.61125 5.65250 5.77574 5.96734 6.02290 6.16870 6.33687 6.37709 6.47939 6.75369 6.82854 6.85734 6.93605 7.51112 7.78270 7.82570 7.92093 8.58665 8.97180 9.51524 11.03094 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.003931 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.054256 B = 7121.690830 C = 7562.992371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.333 3.667 3 N -0.524 5.524 4 C 0.142 3.858 5 C -0.035 4.035 6 F -0.115 7.115 7 C 0.348 3.652 8 N -0.469 5.469 9 C 0.072 3.928 10 C 0.049 3.951 11 N -0.530 5.530 12 C 0.163 3.837 13 C -0.513 4.513 14 H 0.081 0.919 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.067 3.933 22 C 0.053 3.947 23 N -0.533 5.533 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.179 0.821 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.033 0.967 32 H -0.009 1.009 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 15.914 8.913 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 N -0.241 5.241 4 C -0.022 4.022 5 C -0.062 4.062 6 F -0.094 7.094 7 C 0.105 3.895 8 N -0.185 5.185 9 C -0.054 4.054 10 C -0.080 4.080 11 N -0.255 5.255 12 C 0.037 3.963 13 C -0.551 4.551 14 H 0.099 0.901 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.193 1.193 21 C -0.061 4.061 22 C -0.072 4.072 23 N -0.255 5.255 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.196 0.804 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.009 0.991 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.121 0.879 37 H 0.077 0.923 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.975 15.677 8.791 21.598 hybrid contribution 1.501 -0.861 0.897 1.949 sum -10.474 14.816 9.688 20.569 Atomic orbital electron populations 1.20571 0.85183 1.04406 1.04016 1.23169 0.98237 0.82697 0.89383 1.68314 1.08270 1.30037 1.17430 1.23195 0.89815 0.97320 0.91920 1.18925 0.79172 0.95188 1.12936 1.91497 1.26908 1.96896 1.94121 1.20441 0.88433 0.90739 0.89900 1.59073 1.18401 0.99992 1.41049 1.22178 0.92797 0.87598 1.02865 1.22235 0.96496 0.95962 0.93330 1.62156 1.19632 1.03996 1.39672 1.20172 0.92678 0.86013 0.97461 1.21002 1.27953 1.05422 1.00691 0.90148 1.24890 0.95094 0.97954 0.95276 1.69889 1.31882 1.28214 1.23772 0.86866 0.77703 0.82512 0.82702 1.20107 1.21158 1.19264 1.22059 0.93935 0.87697 1.02421 1.22663 0.94713 1.00897 0.88901 1.68362 1.06999 1.31003 1.19087 0.89445 0.89416 0.89374 0.80417 0.91752 0.89654 0.89990 0.94863 0.99120 0.95572 0.92595 0.94658 0.87871 0.92252 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.32 36.00 0.37 -0.28 16 2 C 0.33 3.90 7.64 -157.24 -1.20 2.69 16 3 N -0.52 -6.09 10.33 -10.76 -0.11 -6.20 16 4 C 0.14 1.53 11.28 -17.22 -0.19 1.33 16 5 C -0.03 -0.44 7.04 -38.98 -0.27 -0.72 16 6 F -0.12 -1.51 14.98 2.25 0.03 -1.48 16 7 C 0.35 4.98 6.41 -154.63 -0.99 3.99 16 8 N -0.47 -7.21 4.70 -172.78 -0.81 -8.02 16 9 C 0.07 1.08 4.80 -3.77 -0.02 1.07 16 10 C 0.05 0.83 5.61 -3.77 -0.02 0.80 16 11 N -0.53 -10.83 4.70 -235.90 -1.11 -11.94 16 12 C 0.16 3.86 3.79 -4.97 -0.02 3.84 16 13 C -0.51 -14.23 9.03 -34.44 -0.31 -14.54 16 14 H 0.08 2.42 7.38 -52.48 -0.39 2.03 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 17 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 22 C 0.05 0.85 5.31 -3.77 -0.02 0.83 16 23 N -0.53 -7.22 8.77 -9.90 -0.09 -7.31 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.09 1.18 7.85 -51.93 -0.41 0.78 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H -0.01 -0.21 7.18 -51.93 -0.37 -0.59 16 33 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 2.11 6.79 -51.93 -0.35 1.76 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.36 5.76 -51.93 -0.30 1.06 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -31.00 311.54 -9.25 -40.25 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.17 Total: -2.31 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -2.80 Total: 2.15 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -1.35 Total: -59.82 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.03 Total: -1.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.00 -9.25 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056400.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.102 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds