Wall clock time and date at job start Tue Mar 31 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86796 * 119.99796 * 2 1 4 4 H 1.48493 * 109.47218 * 83.00161 * 3 2 1 5 5 H 1.48504 * 109.46886 * 202.99697 * 3 2 1 6 6 H 1.48503 * 109.47526 * 322.99745 * 3 2 1 7 7 C 1.40061 * 119.99909 * 179.73077 * 2 1 3 8 8 H 1.07995 * 119.99815 * 22.19498 * 7 2 1 9 9 C 1.41262 * 119.99876 * 202.20257 * 7 2 1 10 10 C 1.40728 * 120.15816 * 27.48489 * 9 7 2 11 11 N 1.31905 * 119.92885 * 179.65970 * 10 9 7 12 12 C 1.32160 * 120.26873 * 0.64790 * 11 10 9 13 13 C 1.39915 * 120.32346 * 359.65203 * 12 11 10 14 14 N 1.38837 * 119.97107 * 180.02562 * 13 12 11 15 15 C 1.46955 * 110.99817 * 123.77909 * 14 13 12 16 16 C 1.53049 * 109.36267 * 176.81532 * 15 14 13 17 17 N 1.46959 * 109.36811 * 58.40319 * 16 15 14 18 18 C 1.46888 * 111.00453 * 176.81249 * 17 16 15 19 19 C 1.53005 * 109.47484 * 293.79833 * 18 17 16 20 20 F 1.39894 * 109.47254 * 180.02562 * 19 18 17 21 21 C 1.46957 * 110.87453 * 300.67993 * 17 16 15 22 22 C 1.46958 * 110.99540 * 359.97438 * 14 13 12 23 23 N 1.32266 * 120.06515 * 0.02562 * 13 12 11 24 24 H 0.96996 * 120.00155 * 173.33952 * 1 2 3 25 25 H 1.08001 * 120.03598 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.83636 * 179.68298 * 12 11 10 27 27 H 1.09008 * 109.49133 * 296.77908 * 15 14 13 28 28 H 1.08997 * 109.49222 * 56.84811 * 15 14 13 29 29 H 1.09000 * 109.48827 * 298.43084 * 16 15 14 30 30 H 1.09004 * 109.48893 * 178.36497 * 16 15 14 31 31 H 1.09003 * 109.47048 * 53.79725 * 18 17 16 32 32 H 1.09003 * 109.47537 * 173.79548 * 18 17 16 33 33 H 1.08996 * 109.46547 * 299.99875 * 19 18 17 34 34 H 1.09000 * 109.46530 * 59.99649 * 19 18 17 35 35 H 1.08994 * 109.49283 * 299.35325 * 21 17 16 36 36 H 1.08997 * 109.48890 * 179.28601 * 21 17 16 37 37 H 1.09004 * 109.48599 * 303.15052 * 22 14 13 38 38 H 1.09002 * 109.48954 * 63.19765 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3410 2.1317 1.3896 5 1 3.6049 1.4020 -0.5470 6 1 1.5204 2.6055 -0.8426 7 6 2.0076 -1.2130 0.0057 8 1 1.5276 -2.1152 -0.3434 9 6 3.3417 -1.2561 0.4682 10 6 3.7909 -0.3210 1.4191 11 7 5.0356 -0.3696 1.8528 12 6 5.8676 -1.2856 1.3886 13 6 5.4343 -2.2168 0.4384 14 7 6.3142 -3.1762 -0.0440 15 6 5.7830 -4.5304 0.1649 16 6 6.7425 -5.5522 -0.4498 17 7 8.0683 -5.4087 0.1677 18 6 8.9994 -6.4238 -0.3425 19 6 8.5393 -7.8112 0.1096 20 9 9.4264 -8.7779 -0.3758 21 6 8.5994 -4.0545 -0.0412 22 6 7.6401 -3.0325 0.5734 23 7 4.1871 -2.1839 -0.0009 24 1 -0.4850 -0.8343 -0.0974 25 1 3.1156 0.4320 1.7977 26 1 6.8866 -1.3159 1.7448 27 1 5.6841 -4.7215 1.2335 28 1 4.8067 -4.6157 -0.3120 29 1 6.8203 -5.3782 -1.5230 30 1 6.3651 -6.5590 -0.2707 31 1 9.0186 -6.3845 -1.4317 32 1 9.9989 -6.2281 0.0457 33 1 8.5201 -7.8505 1.1987 34 1 7.5398 -8.0069 -0.2787 35 1 8.6984 -3.8634 -1.1097 36 1 9.5758 -3.9693 0.4357 37 1 8.0174 -2.0257 0.3942 38 1 7.5622 -3.2061 1.6467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165105535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:24 Heat of formation + Delta-G solvation = 4.197804 kcal Electronic energy + Delta-G solvation = -21703.110331 eV Core-core repulsion = 18301.769076 eV Total energy + Delta-G solvation = -3401.341255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.85950 -40.18958 -38.72121 -35.92021 -34.11926 -32.64287 -31.07946 -30.99102 -29.14612 -26.10474 -25.86885 -23.78229 -22.55602 -21.91698 -21.24806 -19.94341 -18.62043 -17.05209 -16.52318 -16.31779 -16.16838 -15.67611 -15.42470 -14.95682 -14.80152 -14.48470 -14.16620 -14.01934 -13.62915 -13.59563 -12.87374 -12.69016 -12.46248 -12.13685 -11.91059 -11.65919 -11.27329 -11.13387 -10.94821 -10.94289 -10.69209 -10.46541 -10.17415 -10.01661 -9.94227 -9.45704 -8.82336 -8.59656 -7.89103 -7.59243 -7.25999 -4.94301 2.14069 2.52886 3.09374 3.25319 3.41933 3.49512 3.82335 3.89690 4.35604 4.37432 4.53326 4.67971 4.83656 5.01220 5.09118 5.15904 5.23833 5.29215 5.35175 5.43279 5.50489 5.58851 5.62784 5.71879 5.81379 5.86125 5.97728 6.04287 6.16526 6.37747 6.57423 6.73250 6.76860 7.07765 7.18237 7.27122 7.48351 7.98303 8.13701 8.29803 8.90262 9.36730 9.71406 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.037899 B = 0.003716 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.627193 B = 7533.268075 C = 8028.626716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.048 3.952 3 Si 1.068 2.932 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.281 1.281 7 C -0.469 4.469 8 H 0.089 0.911 9 C 0.231 3.769 10 C -0.090 4.090 11 N -0.402 5.402 12 C -0.142 4.142 13 C 0.302 3.698 14 N -0.479 5.479 15 C 0.072 3.928 16 C 0.051 3.949 17 N -0.539 5.539 18 C 0.025 3.975 19 C 0.062 3.938 20 F -0.219 7.219 21 C 0.060 3.940 22 C 0.059 3.941 23 N -0.535 5.535 24 H 0.293 0.707 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.045 0.955 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.122 -9.234 -0.235 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.176 4.176 3 Si 0.893 3.107 4 H -0.194 1.194 5 H -0.191 1.191 6 H -0.207 1.207 7 C -0.502 4.502 8 H 0.107 0.893 9 C 0.104 3.896 10 C -0.259 4.259 11 N -0.114 5.114 12 C -0.303 4.303 13 C 0.061 3.939 14 N -0.198 5.198 15 C -0.055 4.055 16 C -0.077 4.077 17 N -0.264 5.264 18 C -0.104 4.104 19 C 0.007 3.993 20 F -0.200 7.200 21 C -0.068 4.068 22 C -0.069 4.069 23 N -0.258 5.258 24 H 0.105 0.895 25 H 0.158 0.842 26 H 0.155 0.845 27 H 0.064 0.936 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.858 -7.716 -0.177 14.997 hybrid contribution 0.115 -1.743 -0.316 1.775 sum 12.973 -9.459 -0.493 16.062 Atomic orbital electron populations 1.70482 1.07885 1.33952 1.28573 1.27341 0.95563 1.04405 0.90242 0.83640 0.75732 0.72855 0.78478 1.19406 1.19125 1.20742 1.20462 0.94851 0.97778 1.37139 0.89341 1.19273 0.92909 0.87712 0.89684 1.23209 0.93714 1.05316 1.03631 1.67620 1.03272 1.18557 1.21905 1.22731 1.00709 1.01770 1.05117 1.20445 0.91173 0.92420 0.89813 1.58468 1.02265 1.03178 1.55901 1.22110 0.98312 0.85223 0.99817 1.22353 0.88661 0.99298 0.97367 1.62085 1.02786 1.03388 1.58177 1.22595 0.97414 0.91530 0.98849 1.21968 0.91684 0.85124 1.00518 1.92756 1.71663 1.65270 1.90327 1.22202 0.97752 0.86935 0.99899 1.22279 0.87803 0.99269 0.97499 1.68627 1.01484 1.29203 1.26485 0.89531 0.84151 0.84533 0.93622 0.88496 0.93402 0.89976 0.93557 0.89589 0.89778 0.90657 0.93580 0.89772 0.89246 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.84 13.65 55.55 0.76 -19.08 16 2 C 0.05 1.22 5.36 -17.34 -0.09 1.13 16 3 Si 1.07 23.53 24.95 -169.99 -4.24 19.29 16 4 H -0.27 -5.59 6.71 56.52 0.38 -5.22 16 5 H -0.27 -6.14 6.94 56.52 0.39 -5.74 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.47 -12.42 9.64 -37.75 -0.36 -12.79 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.23 6.07 5.97 -84.83 -0.51 5.57 16 10 C -0.09 -2.27 8.46 -16.58 -0.14 -2.41 16 11 N -0.40 -9.76 10.47 -12.11 -0.13 -9.88 16 12 C -0.14 -3.13 10.00 -16.78 -0.17 -3.29 16 13 C 0.30 6.70 6.45 -155.00 -1.00 5.70 16 14 N -0.48 -8.54 4.78 -172.87 -0.83 -9.37 16 15 C 0.07 1.14 5.47 -3.77 -0.02 1.12 16 16 C 0.05 0.61 5.41 -3.77 -0.02 0.59 16 17 N -0.54 -5.93 4.71 -234.47 -1.10 -7.04 16 18 C 0.02 0.22 5.41 -3.83 -0.02 0.20 16 19 C 0.06 0.53 7.49 37.16 0.28 0.81 16 20 F -0.22 -2.31 17.36 2.25 0.04 -2.27 16 21 C 0.06 0.67 5.61 -3.77 -0.02 0.65 16 22 C 0.06 0.83 4.28 -3.76 -0.02 0.82 16 23 N -0.53 -13.52 9.81 -10.14 -0.10 -13.62 16 24 H 0.29 7.12 8.73 -40.82 -0.36 6.76 16 25 H 0.14 3.41 4.71 -52.49 -0.25 3.17 16 26 H 0.14 2.54 5.78 -52.49 -0.30 2.24 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.10 1.71 7.68 -51.93 -0.40 1.31 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.82 6.34 -51.93 -0.33 0.49 16 31 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.09 0.70 8.03 -51.93 -0.42 0.29 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.59 6.49 -51.93 -0.34 0.25 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.09 1.22 7.15 -51.93 -0.37 0.85 16 38 H 0.06 0.80 7.56 -51.93 -0.39 0.40 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -28.71 305.33 -8.03 -36.74 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.94 Total: 2.53 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.09 Total: -1.91 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -1.40 Total: -58.99 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.24 Total: 19.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.71 -8.03 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165105535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.937 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds