Wall clock time and date at job start Tue Mar 31 2020 01:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86796 * 119.99796 * 2 1 4 4 H 1.48493 * 109.47218 * 83.00161 * 3 2 1 5 5 H 1.48504 * 109.46886 * 202.99697 * 3 2 1 6 6 H 1.48503 * 109.47526 * 322.99745 * 3 2 1 7 7 C 1.40061 * 119.99909 * 179.73077 * 2 1 3 8 8 H 1.07995 * 119.99815 * 22.19498 * 7 2 1 9 9 C 1.41262 * 119.99876 * 202.20257 * 7 2 1 10 10 C 1.40728 * 120.15816 * 27.48489 * 9 7 2 11 11 N 1.31905 * 119.92885 * 179.65970 * 10 9 7 12 12 C 1.32160 * 120.26873 * 0.64790 * 11 10 9 13 13 C 1.39915 * 120.32346 * 359.65203 * 12 11 10 14 14 N 1.38837 * 119.97107 * 180.02562 * 13 12 11 15 15 C 1.46955 * 110.99817 * 123.77909 * 14 13 12 16 16 C 1.53049 * 109.36267 * 176.81532 * 15 14 13 17 17 N 1.46959 * 109.36811 * 58.40319 * 16 15 14 18 18 C 1.46888 * 111.00453 * 176.81249 * 17 16 15 19 19 C 1.53005 * 109.47484 * 293.79833 * 18 17 16 20 20 F 1.39894 * 109.47254 * 180.02562 * 19 18 17 21 21 C 1.46957 * 110.87453 * 300.67993 * 17 16 15 22 22 C 1.46958 * 110.99540 * 359.97438 * 14 13 12 23 23 N 1.32266 * 120.06515 * 0.02562 * 13 12 11 24 24 H 0.96996 * 120.00155 * 173.33952 * 1 2 3 25 25 H 1.08001 * 120.03598 * 0.02562 * 10 9 7 26 26 H 1.07998 * 119.83636 * 179.68298 * 12 11 10 27 27 H 1.09008 * 109.49133 * 296.77908 * 15 14 13 28 28 H 1.08997 * 109.49222 * 56.84811 * 15 14 13 29 29 H 1.09000 * 109.48827 * 298.43084 * 16 15 14 30 30 H 1.09004 * 109.48893 * 178.36497 * 16 15 14 31 31 H 1.09003 * 109.47048 * 53.79725 * 18 17 16 32 32 H 1.09003 * 109.47537 * 173.79548 * 18 17 16 33 33 H 1.08996 * 109.46547 * 299.99875 * 19 18 17 34 34 H 1.09000 * 109.46530 * 59.99649 * 19 18 17 35 35 H 1.08994 * 109.49283 * 299.35325 * 21 17 16 36 36 H 1.08997 * 109.48890 * 179.28601 * 21 17 16 37 37 H 1.09004 * 109.48599 * 303.15052 * 22 14 13 38 38 H 1.09002 * 109.48954 * 63.19765 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.3410 2.1317 1.3896 5 1 3.6049 1.4020 -0.5470 6 1 1.5204 2.6055 -0.8426 7 6 2.0076 -1.2130 0.0057 8 1 1.5276 -2.1152 -0.3434 9 6 3.3417 -1.2561 0.4682 10 6 3.7909 -0.3210 1.4191 11 7 5.0356 -0.3696 1.8528 12 6 5.8676 -1.2856 1.3886 13 6 5.4343 -2.2168 0.4384 14 7 6.3142 -3.1762 -0.0440 15 6 5.7830 -4.5304 0.1649 16 6 6.7425 -5.5522 -0.4498 17 7 8.0683 -5.4087 0.1677 18 6 8.9994 -6.4238 -0.3425 19 6 8.5393 -7.8112 0.1096 20 9 9.4264 -8.7779 -0.3758 21 6 8.5994 -4.0545 -0.0412 22 6 7.6401 -3.0325 0.5734 23 7 4.1871 -2.1839 -0.0009 24 1 -0.4850 -0.8343 -0.0974 25 1 3.1156 0.4320 1.7977 26 1 6.8866 -1.3159 1.7448 27 1 5.6841 -4.7215 1.2335 28 1 4.8067 -4.6157 -0.3120 29 1 6.8203 -5.3782 -1.5230 30 1 6.3651 -6.5590 -0.2707 31 1 9.0186 -6.3845 -1.4317 32 1 9.9989 -6.2281 0.0457 33 1 8.5201 -7.8505 1.1987 34 1 7.5398 -8.0069 -0.2787 35 1 8.6984 -3.8634 -1.1097 36 1 9.5758 -3.9693 0.4357 37 1 8.0174 -2.0257 0.3942 38 1 7.5622 -3.2061 1.6467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165105535.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:23 Heat of formation + Delta-G solvation = -17.263584 kcal Electronic energy + Delta-G solvation = -21704.040966 eV Core-core repulsion = 18301.769076 eV Total energy + Delta-G solvation = -3402.271890 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.59791 -41.77335 -40.08425 -37.20080 -35.99239 -34.45454 -32.35946 -32.19245 -30.49416 -27.80309 -27.08347 -25.10726 -23.88739 -23.36487 -22.66210 -21.15598 -20.39997 -18.33192 -18.15116 -17.57714 -17.20354 -16.96153 -16.43770 -16.27839 -15.92156 -15.71342 -15.57078 -15.39321 -15.16809 -14.77416 -14.46072 -14.27044 -13.83619 -13.44233 -13.10598 -12.77018 -12.59739 -12.36288 -12.31726 -12.18752 -12.01059 -11.92379 -11.77617 -11.71710 -11.46946 -11.22832 -10.55515 -9.76357 -9.53932 -9.48813 -8.96568 -6.94259 0.29463 0.64720 1.31859 1.48348 1.68638 2.03840 2.35408 2.56203 2.66333 3.32374 3.62934 3.70764 3.79730 3.80907 3.91635 4.05728 4.12523 4.14226 4.20975 4.27586 4.36307 4.45804 4.50624 4.57534 4.67591 4.74263 4.77340 4.81240 4.88697 4.94320 5.01111 5.28290 5.29186 5.67068 5.70748 5.87776 5.93066 6.01390 6.27268 6.38409 7.01638 7.48561 7.75993 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.037899 B = 0.003716 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.627193 B = 7533.268075 C = 8028.626716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.028 3.972 3 Si 1.099 2.901 4 H -0.248 1.248 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.062 0.938 9 C 0.221 3.779 10 C -0.112 4.112 11 N -0.409 5.409 12 C -0.130 4.130 13 C 0.301 3.699 14 N -0.485 5.485 15 C 0.075 3.925 16 C 0.062 3.938 17 N -0.541 5.541 18 C 0.029 3.971 19 C 0.062 3.938 20 F -0.230 7.230 21 C 0.066 3.934 22 C 0.054 3.946 23 N -0.562 5.562 24 H 0.289 0.711 25 H 0.146 0.854 26 H 0.177 0.823 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.953 -9.554 0.268 18.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.192 4.192 3 Si 0.919 3.081 4 H -0.173 1.173 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.093 3.907 10 C -0.278 4.278 11 N -0.121 5.121 12 C -0.293 4.293 13 C 0.060 3.940 14 N -0.204 5.204 15 C -0.052 4.052 16 C -0.067 4.067 17 N -0.267 5.267 18 C -0.099 4.099 19 C 0.007 3.993 20 F -0.212 7.212 21 C -0.062 4.062 22 C -0.073 4.073 23 N -0.286 5.286 24 H 0.101 0.899 25 H 0.163 0.837 26 H 0.193 0.807 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.668 -8.052 0.333 17.619 hybrid contribution -0.536 -1.819 -0.482 1.956 sum 15.132 -9.870 -0.149 18.067 Atomic orbital electron populations 1.70518 1.08079 1.33753 1.29876 1.28190 0.95681 1.06024 0.89337 0.83243 0.74044 0.70983 0.79794 1.17314 1.20983 1.18640 1.20412 0.95750 0.97628 1.39546 0.92002 1.19372 0.92980 0.88416 0.89895 1.23200 0.94443 1.05879 1.04234 1.67671 1.03103 1.19239 1.22118 1.23436 1.01904 1.00224 1.03713 1.20900 0.90622 0.93348 0.89126 1.58527 1.03024 1.03109 1.55697 1.22086 0.98424 0.85137 0.99533 1.22246 0.88744 0.98992 0.96672 1.62073 1.02555 1.03873 1.58177 1.22599 0.97450 0.90982 0.98880 1.22038 0.91670 0.84541 1.01069 1.92737 1.72129 1.65759 1.90527 1.22210 0.98049 0.86093 0.99854 1.22489 0.86077 1.00961 0.97735 1.68609 1.03017 1.29480 1.27497 0.89934 0.83697 0.80668 0.94104 0.91127 0.93846 0.87736 0.93552 0.88194 0.88895 0.89980 0.93796 0.86683 0.88565 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.29 13.65 21.84 0.30 -40.99 16 2 C 0.03 1.44 5.36 85.30 0.46 1.90 16 3 Si 1.10 47.57 24.95 68.60 1.71 49.29 16 4 H -0.25 -9.90 6.71 99.48 0.67 -9.23 16 5 H -0.28 -13.03 6.94 99.48 0.69 -12.34 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.50 -27.66 9.64 23.46 0.23 -27.43 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 C 0.22 11.87 5.97 40.16 0.24 12.11 16 10 C -0.11 -5.65 8.46 85.29 0.72 -4.93 16 11 N -0.41 -19.36 10.47 -192.23 -2.01 -21.38 16 12 C -0.13 -5.45 10.00 85.05 0.85 -4.60 16 13 C 0.30 13.11 6.45 133.35 0.86 13.97 16 14 N -0.48 -16.54 4.78 -700.84 -3.35 -19.89 16 15 C 0.07 2.29 5.47 86.31 0.47 2.76 16 16 C 0.06 1.34 5.41 86.31 0.47 1.81 16 17 N -0.54 -10.05 4.71 -895.73 -4.22 -14.27 16 18 C 0.03 0.42 5.41 86.31 0.47 0.89 16 19 C 0.06 0.87 7.49 71.98 0.54 1.41 16 20 F -0.23 -4.28 17.36 44.97 0.78 -3.50 16 21 C 0.07 1.22 5.61 86.31 0.48 1.70 16 22 C 0.05 1.35 4.28 86.31 0.37 1.72 16 23 N -0.56 -28.90 9.81 -186.00 -1.82 -30.72 16 24 H 0.29 14.65 8.73 -92.71 -0.81 13.84 16 25 H 0.15 7.05 4.71 -2.91 -0.01 7.03 16 26 H 0.18 5.88 5.78 -2.91 -0.02 5.86 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.07 2.53 7.68 -2.39 -0.02 2.51 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.82 6.34 -2.39 -0.02 1.80 16 31 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.04 6.49 -2.39 -0.02 1.02 16 35 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.12 1.49 8.07 -2.39 -0.02 1.48 16 37 H 0.10 2.27 7.15 -2.39 -0.02 2.25 16 38 H 0.06 1.47 7.56 -2.39 -0.02 1.45 16 Total: -1.00 -62.94 305.33 -1.48 -64.42 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.98 Total: 15.73 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.15 Total: 1.30 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -11.11 Total: -127.24 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.50 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.71 Total: 49.29 kcal Total: -62.94 -1.48 -64.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165105535.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.155 kcal (2) G-P(sol) polarization free energy of solvation -62.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds