Wall clock time and date at job start Tue Mar 31 2020 01:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48504 * 109.47139 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46957 * 119.99871 * 3 2 1 6 6 H 1.48494 * 109.47152 * 240.00162 * 3 2 1 7 7 C 1.40055 * 120.00164 * 179.72370 * 2 1 3 8 8 H 1.08006 * 120.00169 * 154.32070 * 7 2 1 9 9 C 1.41270 * 120.00023 * 334.32659 * 7 2 1 10 10 C 1.40719 * 120.15899 * 334.57756 * 9 7 2 11 11 N 1.31902 * 119.92840 * 179.66105 * 10 9 7 12 12 C 1.32158 * 120.27225 * 0.63988 * 11 10 9 13 13 C 1.39925 * 120.32050 * 359.65249 * 12 11 10 14 14 N 1.38822 * 119.96604 * 180.02562 * 13 12 11 15 15 C 1.46852 * 111.00025 * 124.19349 * 14 13 12 16 16 C 1.53039 * 109.52568 * 174.16071 * 15 14 13 17 17 C 1.53114 * 109.27812 * 59.17503 * 16 15 14 18 18 F 1.39908 * 109.52124 * 62.25500 * 17 16 15 19 19 C 1.52998 * 109.57559 * 182.40679 * 17 16 15 20 20 N 1.46893 * 109.47547 * 299.72096 * 19 17 16 21 21 C 1.53116 * 109.16469 * 302.34892 * 17 16 15 22 22 C 1.46845 * 111.00401 * 359.97438 * 14 13 12 23 23 N 1.32258 * 120.06105 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99536 * 174.24341 * 1 2 3 25 25 H 1.08003 * 120.03288 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.83831 * 179.68627 * 12 11 10 27 27 H 1.08998 * 109.45743 * 294.17356 * 15 14 13 28 28 H 1.08997 * 109.45700 * 54.14331 * 15 14 13 29 29 H 1.09003 * 109.49874 * 299.23925 * 16 15 14 30 30 H 1.08999 * 109.50557 * 179.12129 * 16 15 14 31 31 H 1.09007 * 109.46858 * 59.71712 * 19 17 16 32 32 H 1.09002 * 109.47326 * 179.71780 * 19 17 16 33 33 H 1.00908 * 111.00103 * 56.04272 * 20 19 17 34 34 H 1.00903 * 111.01014 * 179.97438 * 20 19 17 35 35 H 1.09000 * 109.50007 * 297.71011 * 21 17 16 36 36 H 1.09005 * 109.50277 * 177.59390 * 21 17 16 37 37 H 1.08998 * 109.46164 * 305.85327 * 22 14 13 38 38 H 1.08999 * 109.46396 * 65.83427 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 1.2762 2.7465 -0.0006 5 1 3.0949 1.6965 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0076 -1.2129 0.0058 8 1 3.0077 -1.2610 -0.3992 9 6 1.4059 -2.3734 0.5415 10 6 0.3961 -2.2610 1.5150 11 7 -0.1673 -3.3474 2.0072 12 6 0.2213 -4.5428 1.5991 13 6 1.2288 -4.6674 0.6360 14 7 1.6310 -5.9266 0.2122 15 6 1.5135 -6.0536 -1.2461 16 6 2.0994 -7.3953 -1.6916 17 6 1.3430 -8.5322 -0.9989 18 9 -0.0006 -8.5049 -1.3879 19 6 1.9621 -9.8747 -1.3931 20 7 1.8682 -10.0487 -2.8486 21 6 1.4403 -8.3496 0.5182 22 6 0.8736 -6.9802 0.8998 23 7 1.7981 -3.5865 0.1292 24 1 -0.4850 -0.8359 -0.0843 25 1 0.0791 -1.2862 1.8551 26 1 -0.2412 -5.4277 2.0104 27 1 0.4627 -6.0035 -1.5314 28 1 2.0593 -5.2415 -1.7264 29 1 3.1537 -7.4405 -1.4187 30 1 1.9979 -7.4960 -2.7722 31 1 3.0095 -9.8942 -1.0917 32 1 1.4256 -10.6824 -0.8952 33 1 2.3026 -9.2780 -3.3338 34 1 2.2710 -10.9286 -3.1345 35 1 2.4843 -8.4098 0.8257 36 1 0.8678 -9.1320 1.0164 37 1 0.9547 -6.8411 1.9778 38 1 -0.1742 -6.9260 0.6044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165262834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:22 Heat of formation + Delta-G solvation = -9.840067 kcal Electronic energy + Delta-G solvation = -22183.033710 eV Core-core repulsion = 18781.083728 eV Total energy + Delta-G solvation = -3401.949982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.56951 -39.87449 -38.03444 -35.64728 -34.31489 -32.82536 -31.71147 -31.04589 -28.68433 -26.14914 -26.00455 -23.69374 -22.65503 -21.76382 -21.09996 -19.68581 -18.27266 -16.87254 -16.37899 -16.12778 -15.77576 -15.42971 -15.21519 -14.71789 -14.43911 -14.22508 -14.13258 -13.92143 -13.47319 -13.13054 -12.78781 -12.27269 -12.20589 -12.01742 -11.90284 -11.86068 -11.58885 -11.27097 -11.08816 -10.50424 -10.44104 -10.29888 -10.19736 -9.96255 -9.88788 -9.37331 -9.00292 -8.83181 -7.57412 -7.53613 -7.24700 -4.84796 2.29964 2.71198 3.07414 3.16914 3.29445 3.83349 3.96997 4.08452 4.35415 4.37794 4.44075 4.56303 4.76336 5.09075 5.20770 5.24850 5.32883 5.41237 5.47713 5.57179 5.67047 5.71835 5.84150 5.88639 6.01011 6.04153 6.13218 6.22233 6.32113 6.58985 6.73643 6.76793 7.09208 7.23943 7.27499 7.47920 7.66753 7.77420 8.26499 8.48874 9.04374 9.51254 9.76144 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.032940 B = 0.004084 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.829322 B = 6854.301527 C = 7315.628021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.039 3.961 3 Si 1.076 2.924 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.472 4.472 8 H 0.089 0.911 9 C 0.227 3.773 10 C -0.070 4.070 11 N -0.410 5.410 12 C -0.154 4.154 13 C 0.300 3.700 14 N -0.475 5.475 15 C 0.068 3.932 16 C -0.137 4.137 17 C 0.122 3.878 18 F -0.199 7.199 19 C 0.045 3.955 20 N -0.847 5.847 21 C -0.135 4.135 22 C 0.057 3.943 23 N -0.542 5.542 24 H 0.300 0.700 25 H 0.145 0.855 26 H 0.133 0.867 27 H 0.042 0.958 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.343 0.657 34 H 0.343 0.657 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -13.548 -2.952 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.186 4.186 3 Si 0.897 3.103 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.505 4.505 8 H 0.107 0.893 9 C 0.100 3.900 10 C -0.240 4.240 11 N -0.121 5.121 12 C -0.314 4.314 13 C 0.060 3.940 14 N -0.194 5.194 15 C -0.058 4.058 16 C -0.175 4.175 17 C 0.103 3.897 18 F -0.179 7.179 19 C -0.087 4.087 20 N -0.378 5.378 21 C -0.174 4.174 22 C -0.071 4.071 23 N -0.265 5.265 24 H 0.114 0.886 25 H 0.162 0.838 26 H 0.150 0.850 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.115 -12.029 -2.685 12.994 hybrid contribution 0.397 -1.790 -0.150 1.839 sum 4.511 -13.818 -2.836 14.810 Atomic orbital electron populations 1.70446 1.08274 1.34508 1.26510 1.27323 0.95534 1.04701 0.91026 0.83482 0.75545 0.72843 0.78382 1.19507 1.19577 1.19741 1.20427 1.03370 0.92185 1.34519 0.89275 1.19219 0.90424 0.90399 0.89980 1.23393 1.03250 0.96516 1.00870 1.67659 1.23538 0.98587 1.22333 1.22662 1.04034 0.95721 1.08987 1.20381 0.90365 0.89471 0.93778 1.58375 1.53789 1.00902 1.06304 1.21989 1.00184 0.97442 0.86194 1.22225 1.00837 0.93867 1.00594 1.20986 0.78170 0.95448 0.95086 1.92860 1.35119 1.97497 1.92440 1.22324 0.99371 0.97159 0.89833 1.58636 1.66215 1.07775 1.05152 1.22192 1.03662 0.97750 0.93745 1.22138 0.95898 0.89260 0.99804 1.68579 1.30784 0.97275 1.29875 0.88619 0.83772 0.84990 0.94005 0.88515 0.89552 0.90064 0.93664 0.89965 0.84282 0.84402 0.89302 0.89982 0.89302 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.79 12.30 55.55 0.68 -19.10 16 2 C 0.04 0.94 4.93 -17.34 -0.09 0.86 16 3 Si 1.08 20.33 30.01 -169.99 -5.10 15.23 16 4 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 6 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.47 -12.37 9.21 -37.75 -0.35 -12.72 16 8 H 0.09 2.30 7.97 -52.48 -0.42 1.88 16 9 C 0.23 6.17 6.13 -84.83 -0.52 5.65 16 10 C -0.07 -1.86 9.14 -16.58 -0.15 -2.01 16 11 N -0.41 -10.64 10.47 -12.11 -0.13 -10.77 16 12 C -0.15 -3.67 10.00 -16.78 -0.17 -3.83 16 13 C 0.30 7.06 6.45 -155.02 -1.00 6.06 16 14 N -0.47 -8.98 4.72 -173.08 -0.82 -9.79 16 15 C 0.07 1.19 5.23 -3.83 -0.02 1.17 16 16 C -0.14 -1.75 4.77 -26.65 -0.13 -1.88 16 17 C 0.12 1.48 0.99 -90.50 -0.09 1.39 16 18 F -0.20 -3.04 15.89 2.25 0.04 -3.00 16 19 C 0.04 0.42 6.07 -3.83 -0.02 0.39 16 20 N -0.85 -7.63 9.53 -10.37 -0.10 -7.73 16 21 C -0.13 -1.59 5.16 -26.65 -0.14 -1.73 16 22 C 0.06 0.88 4.02 -3.84 -0.02 0.87 16 23 N -0.54 -14.23 9.74 -10.14 -0.10 -14.33 16 24 H 0.30 8.04 6.72 -40.82 -0.27 7.77 16 25 H 0.15 3.86 6.49 -52.48 -0.34 3.52 16 26 H 0.13 2.74 5.78 -52.49 -0.30 2.43 16 27 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 28 H 0.10 1.85 7.59 -51.93 -0.39 1.46 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.93 6.72 -51.93 -0.35 0.58 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 2.88 7.11 -39.29 -0.28 2.60 16 34 H 0.34 2.29 9.08 -39.29 -0.36 1.93 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.35 6.96 -51.93 -0.36 0.99 16 38 H 0.05 0.84 7.45 -51.93 -0.39 0.46 16 LS Contribution 306.53 15.07 4.62 4.62 Total: -1.00 -30.19 306.53 -8.37 -38.56 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -4.78 Total: 12.10 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.69 Total: -5.78 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.46 Total: -61.73 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.10 Total: 15.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.19 -8.37 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165262834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.718 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds