Wall clock time and date at job start Tue Mar 31 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48504 * 109.47139 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46957 * 119.99871 * 3 2 1 6 6 H 1.48494 * 109.47152 * 240.00162 * 3 2 1 7 7 C 1.40055 * 120.00164 * 179.72370 * 2 1 3 8 8 H 1.08006 * 120.00169 * 154.32070 * 7 2 1 9 9 C 1.41270 * 120.00023 * 334.32659 * 7 2 1 10 10 C 1.40719 * 120.15899 * 334.57756 * 9 7 2 11 11 N 1.31902 * 119.92840 * 179.66105 * 10 9 7 12 12 C 1.32158 * 120.27225 * 0.63988 * 11 10 9 13 13 C 1.39925 * 120.32050 * 359.65249 * 12 11 10 14 14 N 1.38822 * 119.96604 * 180.02562 * 13 12 11 15 15 C 1.46852 * 111.00025 * 124.19349 * 14 13 12 16 16 C 1.53039 * 109.52568 * 174.16071 * 15 14 13 17 17 C 1.53114 * 109.27812 * 59.17503 * 16 15 14 18 18 F 1.39908 * 109.52124 * 62.25500 * 17 16 15 19 19 C 1.52998 * 109.57559 * 182.40679 * 17 16 15 20 20 N 1.46893 * 109.47547 * 299.72096 * 19 17 16 21 21 C 1.53116 * 109.16469 * 302.34892 * 17 16 15 22 22 C 1.46845 * 111.00401 * 359.97438 * 14 13 12 23 23 N 1.32258 * 120.06105 * 0.02562 * 13 12 11 24 24 H 0.97005 * 119.99536 * 174.24341 * 1 2 3 25 25 H 1.08003 * 120.03288 * 359.97438 * 10 9 7 26 26 H 1.07996 * 119.83831 * 179.68627 * 12 11 10 27 27 H 1.08998 * 109.45743 * 294.17356 * 15 14 13 28 28 H 1.08997 * 109.45700 * 54.14331 * 15 14 13 29 29 H 1.09003 * 109.49874 * 299.23925 * 16 15 14 30 30 H 1.08999 * 109.50557 * 179.12129 * 16 15 14 31 31 H 1.09007 * 109.46858 * 59.71712 * 19 17 16 32 32 H 1.09002 * 109.47326 * 179.71780 * 19 17 16 33 33 H 1.00908 * 111.00103 * 56.04272 * 20 19 17 34 34 H 1.00903 * 111.01014 * 179.97438 * 20 19 17 35 35 H 1.09000 * 109.50007 * 297.71011 * 21 17 16 36 36 H 1.09005 * 109.50277 * 177.59390 * 21 17 16 37 37 H 1.08998 * 109.46164 * 305.85327 * 22 14 13 38 38 H 1.08999 * 109.46396 * 65.83427 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 1.2762 2.7465 -0.0006 5 1 3.0949 1.6965 1.2125 6 1 3.0949 1.6965 -1.2125 7 6 2.0076 -1.2129 0.0058 8 1 3.0077 -1.2610 -0.3992 9 6 1.4059 -2.3734 0.5415 10 6 0.3961 -2.2610 1.5150 11 7 -0.1673 -3.3474 2.0072 12 6 0.2213 -4.5428 1.5991 13 6 1.2288 -4.6674 0.6360 14 7 1.6310 -5.9266 0.2122 15 6 1.5135 -6.0536 -1.2461 16 6 2.0994 -7.3953 -1.6916 17 6 1.3430 -8.5322 -0.9989 18 9 -0.0006 -8.5049 -1.3879 19 6 1.9621 -9.8747 -1.3931 20 7 1.8682 -10.0487 -2.8486 21 6 1.4403 -8.3496 0.5182 22 6 0.8736 -6.9802 0.8998 23 7 1.7981 -3.5865 0.1292 24 1 -0.4850 -0.8359 -0.0843 25 1 0.0791 -1.2862 1.8551 26 1 -0.2412 -5.4277 2.0104 27 1 0.4627 -6.0035 -1.5314 28 1 2.0593 -5.2415 -1.7264 29 1 3.1537 -7.4405 -1.4187 30 1 1.9979 -7.4960 -2.7722 31 1 3.0095 -9.8942 -1.0917 32 1 1.4256 -10.6824 -0.8952 33 1 2.3026 -9.2780 -3.3338 34 1 2.2710 -10.9286 -3.1345 35 1 2.4843 -8.4098 0.8257 36 1 0.8678 -9.1320 1.0164 37 1 0.9547 -6.8411 1.9778 38 1 -0.1742 -6.9260 0.6044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165262834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:21 Heat of formation + Delta-G solvation = -32.393951 kcal Electronic energy + Delta-G solvation = -22184.011720 eV Core-core repulsion = 18781.083728 eV Total energy + Delta-G solvation = -3402.927992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.63503 -41.65593 -39.54257 -36.80101 -36.07090 -34.54943 -33.06803 -32.27762 -30.39003 -27.97280 -27.22271 -25.20404 -24.07252 -23.44959 -22.54439 -20.83252 -20.09282 -18.27144 -18.06422 -17.33672 -17.21573 -16.83534 -16.47466 -15.95117 -15.81309 -15.64831 -15.49264 -15.17491 -14.80066 -14.78095 -14.01820 -13.77287 -13.59556 -13.24477 -13.22387 -13.12734 -13.00842 -12.83087 -12.32438 -12.17737 -11.97292 -11.91927 -11.82314 -11.39298 -11.27817 -11.12608 -10.65030 -9.63698 -9.55623 -9.51430 -9.06338 -6.88414 0.36335 0.73189 1.52370 1.62224 1.84928 2.24941 2.40961 2.54718 3.26284 3.35418 3.44730 3.51282 3.66318 3.76557 3.85119 3.99985 4.05270 4.12116 4.16031 4.33405 4.38738 4.49553 4.55114 4.61470 4.66738 4.74594 4.78069 4.87127 4.94002 4.98308 5.23814 5.30573 5.46094 5.63568 5.81281 5.85839 6.16245 6.31234 6.52802 6.55064 7.04704 7.52031 7.75546 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.032940 B = 0.004084 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.829322 B = 6854.301527 C = 7315.628021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.011 3.989 3 Si 1.129 2.871 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.253 1.253 7 C -0.495 4.495 8 H 0.087 0.913 9 C 0.205 3.795 10 C -0.096 4.096 11 N -0.420 5.420 12 C -0.158 4.158 13 C 0.301 3.699 14 N -0.471 5.471 15 C 0.071 3.929 16 C -0.127 4.127 17 C 0.116 3.884 18 F -0.219 7.219 19 C 0.052 3.948 20 N -0.861 5.861 21 C -0.127 4.127 22 C 0.051 3.949 23 N -0.565 5.565 24 H 0.282 0.718 25 H 0.136 0.864 26 H 0.163 0.837 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.346 0.654 34 H 0.357 0.643 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -15.297 -3.087 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.209 4.209 3 Si 0.943 3.057 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.177 1.177 7 C -0.527 4.527 8 H 0.105 0.895 9 C 0.078 3.922 10 C -0.265 4.265 11 N -0.132 5.132 12 C -0.319 4.319 13 C 0.059 3.941 14 N -0.189 5.189 15 C -0.055 4.055 16 C -0.165 4.165 17 C 0.097 3.903 18 F -0.200 7.200 19 C -0.079 4.079 20 N -0.394 5.394 21 C -0.165 4.165 22 C -0.076 4.076 23 N -0.289 5.289 24 H 0.095 0.905 25 H 0.153 0.847 26 H 0.180 0.820 27 H 0.039 0.961 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.160 0.840 34 H 0.172 0.828 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.483 -13.813 -2.828 15.128 hybrid contribution -0.058 -1.426 -0.123 1.433 sum 5.426 -15.239 -2.952 16.443 Atomic orbital electron populations 1.70562 1.09036 1.33292 1.27898 1.28890 0.95388 1.07615 0.88995 0.82881 0.74692 0.68503 0.79625 1.18948 1.18276 1.17671 1.20689 1.03494 0.93119 1.35387 0.89528 1.19512 0.90935 0.91275 0.90438 1.23204 1.04584 0.96514 1.02177 1.67625 1.23805 0.99185 1.22597 1.23224 1.03907 0.95942 1.08793 1.20843 0.89440 0.90722 0.93061 1.58461 1.53610 0.99516 1.07342 1.21966 0.98954 0.99645 0.84984 1.22191 1.01459 0.91238 1.01574 1.21226 0.77098 0.96776 0.95163 1.92826 1.36866 1.97654 1.92655 1.22250 1.00399 0.95174 0.90110 1.58615 1.66865 1.08747 1.05141 1.22208 1.04963 0.95559 0.93761 1.22328 0.95232 0.90286 0.99782 1.68618 1.31733 0.97803 1.30735 0.90536 0.84703 0.81957 0.96055 0.90993 0.87884 0.88663 0.91387 0.89204 0.84016 0.82846 0.87460 0.87394 0.88824 0.94296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -41.31 12.30 21.84 0.27 -41.05 16 2 C 0.01 0.53 4.93 85.30 0.42 0.95 16 3 Si 1.13 40.40 30.01 68.60 2.06 42.46 16 4 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 6 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 7 C -0.49 -26.68 9.21 23.46 0.22 -26.46 16 8 H 0.09 4.58 7.97 -2.91 -0.02 4.56 16 9 C 0.20 11.57 6.13 40.16 0.25 11.82 16 10 C -0.10 -5.36 9.14 85.29 0.78 -4.58 16 11 N -0.42 -22.35 10.47 -192.23 -2.01 -24.37 16 12 C -0.16 -7.53 10.00 85.05 0.85 -6.68 16 13 C 0.30 14.32 6.45 133.36 0.86 15.18 16 14 N -0.47 -17.50 4.72 -701.49 -3.31 -20.81 16 15 C 0.07 2.45 5.23 86.33 0.45 2.90 16 16 C -0.13 -2.97 4.77 30.65 0.15 -2.82 16 17 C 0.12 2.48 0.99 -10.72 -0.01 2.47 16 18 F -0.22 -6.31 15.89 44.97 0.71 -5.60 16 19 C 0.05 0.77 6.07 86.30 0.52 1.29 16 20 N -0.86 -12.86 9.53 -186.72 -1.78 -14.64 16 21 C -0.13 -2.56 5.16 30.64 0.16 -2.40 16 22 C 0.05 1.49 4.02 86.33 0.35 1.83 16 23 N -0.56 -30.53 9.74 -186.01 -1.81 -32.34 16 24 H 0.28 15.87 6.72 -92.70 -0.62 15.24 16 25 H 0.14 7.60 6.49 -2.91 -0.02 7.58 16 26 H 0.16 6.59 5.78 -2.91 -0.02 6.57 16 27 H 0.02 0.81 7.87 -2.39 -0.02 0.79 16 28 H 0.07 2.83 7.59 -2.39 -0.02 2.81 16 29 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 1.99 6.72 -2.39 -0.02 1.97 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.35 4.81 7.11 -89.69 -0.64 4.17 16 34 H 0.36 3.64 9.08 -89.69 -0.81 2.83 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.09 2.65 6.96 -2.39 -0.02 2.63 16 38 H 0.04 1.25 7.45 -2.39 -0.02 1.23 16 Total: -1.00 -67.93 306.53 -1.08 -69.01 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.20 Total: 33.83 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.99 Total: -6.50 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -8.65 Total: -133.20 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.71 Total: -5.60 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.06 Total: 42.46 kcal Total: -67.93 -1.08 -69.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165262834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.617 kcal (2) G-P(sol) polarization free energy of solvation -67.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds