Wall clock time and date at job start Tue Mar 31 2020 01:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35804 * 116.99851 * 2 1 4 4 C 1.38914 * 120.80708 * 0.02562 * 3 2 1 5 5 C 1.38868 * 119.05601 * 179.97438 * 4 3 2 6 6 N 1.39152 * 119.65820 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99636 * 0.02562 * 6 5 4 8 8 H 1.08999 * 109.41684 * 35.14231 * 7 6 5 9 9 C 1.52961 * 109.41505 * 155.00017 * 7 6 5 10 10 C 1.53224 * 109.40622 * 183.63724 * 9 7 6 11 11 C 1.51265 * 108.53774 * 305.36945 * 10 9 7 12 12 C 1.37879 * 120.85558 * 231.32900 * 11 10 9 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 11 10 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 11 10 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 11 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 11 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 11 18 18 C 1.51267 * 118.30109 * 51.59732 * 11 10 9 19 19 C 1.52955 * 109.35949 * 275.31836 * 7 6 5 20 20 N 1.32456 * 120.68906 * 0.27644 * 5 4 3 21 21 C 1.32092 * 121.77507 * 359.43241 * 20 5 4 22 22 C 1.37986 * 120.87370 * 0.56649 * 21 20 5 23 23 F 1.35098 * 120.38830 * 179.74796 * 22 21 20 24 24 H 1.08994 * 109.47494 * 60.00487 * 1 2 3 25 25 H 1.09006 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47115 * 299.99628 * 1 2 3 27 27 H 1.07998 * 120.47289 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00599 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.48011 * 63.65294 * 9 7 6 30 30 H 1.09005 * 109.49026 * 303.61962 * 9 7 6 31 31 H 1.09008 * 109.62736 * 185.65989 * 10 9 7 32 32 H 1.09002 * 109.78659 * 65.17833 * 10 9 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 11 34 34 H 1.09007 * 109.62151 * 68.11811 * 18 11 10 35 35 H 1.09000 * 109.63318 * 188.68623 * 18 11 10 36 36 H 1.09002 * 109.48462 * 296.31120 * 19 7 6 37 37 H 1.09004 * 109.48162 * 56.33879 * 19 7 6 38 38 H 1.07998 * 119.56281 * 180.29088 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3054 2.3856 0.0005 5 6 1.9733 3.6031 0.0011 6 7 1.2443 4.7884 0.0011 7 6 -0.2201 4.7476 0.0011 8 1 -0.5589 3.8972 0.5928 9 6 -0.7648 6.0404 0.6107 10 6 -2.2926 5.9597 0.6942 11 6 -2.8334 5.6439 -0.6827 12 6 -3.8332 6.4106 -1.2428 13 7 -4.3293 7.4313 -0.5783 14 14 -4.4830 5.9996 -2.9452 15 1 -3.6913 6.7305 -3.9670 16 1 -4.3653 4.5380 -3.1803 17 1 -5.9088 6.4033 -3.0416 18 6 -2.2536 4.4615 -1.4271 19 6 -0.7232 4.5997 -1.4358 20 7 3.2971 3.6479 -0.0044 21 6 4.0303 2.5492 0.0005 22 6 3.4382 1.3028 0.0000 23 9 4.1976 0.1855 0.0000 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2259 2.3531 0.0014 28 1 1.7057 5.6416 0.0010 29 1 -0.4789 6.8859 -0.0149 30 1 -0.3526 6.1726 1.6112 31 1 -2.6917 6.9156 1.0338 32 1 -2.5831 5.1734 1.3908 33 1 -5.0324 7.9710 -0.9725 34 1 -2.5377 3.5372 -0.9240 35 1 -2.6276 4.4541 -2.4509 36 1 -0.4384 5.4794 -2.0131 37 1 -0.2814 3.7108 -1.8860 38 1 5.1074 2.6274 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167843116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:34 Heat of formation + Delta-G solvation = -55.941762 kcal Electronic energy + Delta-G solvation = -22050.207951 eV Core-core repulsion = 18613.966098 eV Total energy + Delta-G solvation = -3436.241853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.55775 -40.53366 -38.59254 -37.44414 -34.35380 -31.91828 -31.32568 -29.99354 -29.15583 -27.81820 -26.74235 -23.43608 -22.87009 -21.64572 -21.50603 -19.65347 -18.52611 -17.71564 -17.04926 -16.27864 -16.23568 -15.74838 -15.13109 -15.04317 -14.63728 -14.43151 -14.12966 -13.88385 -13.70338 -13.21255 -12.84580 -12.43065 -12.35523 -12.21311 -11.84250 -11.67599 -11.62344 -11.18968 -10.99461 -10.81536 -10.34920 -10.16056 -9.97972 -9.58616 -9.54866 -9.11492 -8.97566 -8.75666 -8.58761 -7.46498 -6.22210 -4.14297 1.16741 1.37369 2.96569 3.18017 3.28148 3.28362 3.33259 3.80680 4.27771 4.30199 4.56286 4.84546 5.01066 5.04602 5.09541 5.26729 5.33033 5.41085 5.48176 5.63729 5.69812 5.85161 5.98199 6.30127 6.40477 6.41313 6.55313 6.64085 6.68595 6.85332 6.92723 7.07051 7.23426 7.26648 7.51736 7.56870 7.65763 7.80047 8.22317 8.24230 8.83514 9.42103 10.87138 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.004474 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.706642 B = 6257.542697 C = 6786.519118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.178 3.822 4 C -0.307 4.307 5 C 0.437 3.563 6 N -0.707 5.707 7 C 0.160 3.840 8 H 0.071 0.929 9 C -0.114 4.114 10 C 0.014 3.986 11 C -0.493 4.493 12 C 0.078 3.922 13 N -0.887 5.887 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.267 1.267 17 H -0.289 1.289 18 C -0.013 4.013 19 C -0.121 4.121 20 N -0.549 5.549 21 C 0.160 3.840 22 C -0.061 4.061 23 F -0.137 7.137 24 H 0.063 0.937 25 H 0.104 0.896 26 H 0.062 0.938 27 H 0.150 0.850 28 H 0.403 0.597 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.006 0.994 33 H 0.266 0.734 34 H 0.017 0.983 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 -9.694 1.053 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.124 3.876 4 C -0.333 4.333 5 C 0.199 3.801 6 N -0.335 5.335 7 C 0.057 3.943 8 H 0.089 0.911 9 C -0.152 4.152 10 C -0.024 4.024 11 C -0.512 4.512 12 C -0.125 4.125 13 N -0.524 5.524 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.192 1.192 17 H -0.215 1.215 18 C -0.051 4.051 19 C -0.160 4.160 20 N -0.270 5.270 21 C 0.000 4.000 22 C -0.087 4.087 23 F -0.116 7.116 24 H 0.082 0.918 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.239 0.761 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.272 -8.981 1.051 13.685 hybrid contribution -0.752 -0.653 -0.991 1.405 sum 9.520 -9.634 0.060 13.544 Atomic orbital electron populations 1.23207 0.77205 1.04338 1.02440 1.86090 1.22350 1.25589 1.87590 1.19115 0.90704 0.85283 0.92515 1.21466 1.01901 0.90457 1.19490 1.18212 0.87433 0.86791 0.87638 1.45249 1.06530 1.04658 1.77097 1.21167 0.75422 1.00194 0.97565 0.91140 1.21927 1.00727 0.94890 0.97685 1.19335 0.88406 0.98972 0.95713 1.19998 1.18804 1.11106 1.01331 1.24846 0.95730 0.94457 0.97488 1.69826 1.27114 1.17582 1.37870 0.86666 0.78097 0.78970 0.84663 1.20357 1.19219 1.21541 1.19804 0.90873 0.97268 0.97153 1.22142 0.99175 0.99734 0.94982 1.67322 1.05193 1.30800 1.23692 1.22313 1.00189 0.84743 0.92725 1.17749 0.85934 0.84531 1.20496 1.91441 1.74807 1.49990 1.95383 0.91807 0.87788 0.91957 0.83258 0.76111 0.92408 0.94316 0.91958 0.97587 0.92438 0.96465 0.94854 0.92391 0.94686 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.84 101.05 0.99 1.23 16 2 O -0.31 -4.21 10.42 -19.13 -0.20 -4.41 16 3 C 0.18 2.62 6.74 -38.83 -0.26 2.36 16 4 C -0.31 -4.57 7.78 -39.10 -0.30 -4.87 16 5 C 0.44 6.81 7.63 -154.93 -1.18 5.63 16 6 N -0.71 -11.02 5.25 -53.99 -0.28 -11.30 16 7 C 0.16 2.76 2.04 -67.97 -0.14 2.62 16 8 H 0.07 1.21 6.45 -51.93 -0.34 0.88 16 9 C -0.11 -2.16 5.40 -26.64 -0.14 -2.31 16 10 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 11 C -0.49 -12.04 5.50 -98.93 -0.54 -12.59 16 12 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 13 N -0.89 -24.32 12.73 55.43 0.71 -23.62 16 14 Si 0.89 20.14 27.28 -169.99 -4.64 15.50 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -5.85 6.45 56.52 0.36 -5.49 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.01 -0.27 5.62 -27.26 -0.15 -0.43 16 19 C -0.12 -2.26 5.41 -26.41 -0.14 -2.40 16 20 N -0.55 -8.27 10.39 -12.44 -0.13 -8.40 16 21 C 0.16 2.11 11.15 -17.53 -0.20 1.91 16 22 C -0.06 -0.88 7.35 -39.17 -0.29 -1.17 16 23 F -0.14 -1.99 17.17 2.25 0.04 -1.95 16 24 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.61 7.71 -51.93 -0.40 0.21 16 27 H 0.15 2.15 4.49 -52.49 -0.24 1.91 16 28 H 0.40 5.92 8.72 -40.82 -0.36 5.57 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.58 7.07 -51.92 -0.37 1.22 16 32 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.60 7.66 -51.93 -0.40 0.21 16 38 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -27.48 309.60 -7.33 -34.81 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.87 Total: 2.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.62 Total: -7.94 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.29 Total: -43.32 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.41 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.64 Total: 15.50 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.48 -7.33 -34.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.132 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds