Wall clock time and date at job start Tue Mar 31 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35804 * 116.99851 * 2 1 4 4 C 1.38914 * 120.80708 * 0.02562 * 3 2 1 5 5 C 1.38868 * 119.05601 * 179.97438 * 4 3 2 6 6 N 1.39152 * 119.65820 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99636 * 0.02562 * 6 5 4 8 8 H 1.08999 * 109.41684 * 35.14231 * 7 6 5 9 9 C 1.52961 * 109.41505 * 155.00017 * 7 6 5 10 10 C 1.53224 * 109.40622 * 183.63724 * 9 7 6 11 11 C 1.51265 * 108.53774 * 305.36945 * 10 9 7 12 12 C 1.37879 * 120.85558 * 231.32900 * 11 10 9 13 13 N 1.31514 * 119.99350 * 359.97438 * 12 11 10 14 14 Si 1.86798 * 120.00608 * 179.97438 * 12 11 10 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 11 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 11 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 11 18 18 C 1.51267 * 118.30109 * 51.59732 * 11 10 9 19 19 C 1.52955 * 109.35949 * 275.31836 * 7 6 5 20 20 N 1.32456 * 120.68906 * 0.27644 * 5 4 3 21 21 C 1.32092 * 121.77507 * 359.43241 * 20 5 4 22 22 C 1.37986 * 120.87370 * 0.56649 * 21 20 5 23 23 F 1.35098 * 120.38830 * 179.74796 * 22 21 20 24 24 H 1.08994 * 109.47494 * 60.00487 * 1 2 3 25 25 H 1.09006 * 109.46528 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47115 * 299.99628 * 1 2 3 27 27 H 1.07998 * 120.47289 * 0.02562 * 4 3 2 28 28 H 0.96998 * 120.00599 * 180.02562 * 6 5 4 29 29 H 1.08995 * 109.48011 * 63.65294 * 9 7 6 30 30 H 1.09005 * 109.49026 * 303.61962 * 9 7 6 31 31 H 1.09008 * 109.62736 * 185.65989 * 10 9 7 32 32 H 1.09002 * 109.78659 * 65.17833 * 10 9 7 33 33 H 0.97005 * 119.99661 * 179.97438 * 13 12 11 34 34 H 1.09007 * 109.62151 * 68.11811 * 18 11 10 35 35 H 1.09000 * 109.63318 * 188.68623 * 18 11 10 36 36 H 1.09002 * 109.48462 * 296.31120 * 19 7 6 37 37 H 1.09004 * 109.48162 * 56.33879 * 19 7 6 38 38 H 1.07998 * 119.56281 * 180.29088 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3054 2.3856 0.0005 5 6 1.9733 3.6031 0.0011 6 7 1.2443 4.7884 0.0011 7 6 -0.2201 4.7476 0.0011 8 1 -0.5589 3.8972 0.5928 9 6 -0.7648 6.0404 0.6107 10 6 -2.2926 5.9597 0.6942 11 6 -2.8334 5.6439 -0.6827 12 6 -3.8332 6.4106 -1.2428 13 7 -4.3293 7.4313 -0.5783 14 14 -4.4830 5.9996 -2.9452 15 1 -3.6913 6.7305 -3.9670 16 1 -4.3653 4.5380 -3.1803 17 1 -5.9088 6.4033 -3.0416 18 6 -2.2536 4.4615 -1.4271 19 6 -0.7232 4.5997 -1.4358 20 7 3.2971 3.6479 -0.0044 21 6 4.0303 2.5492 0.0005 22 6 3.4382 1.3028 0.0000 23 9 4.1976 0.1855 0.0000 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2259 2.3531 0.0014 28 1 1.7057 5.6416 0.0010 29 1 -0.4789 6.8859 -0.0149 30 1 -0.3526 6.1726 1.6112 31 1 -2.6917 6.9156 1.0338 32 1 -2.5831 5.1734 1.3908 33 1 -5.0324 7.9710 -0.9725 34 1 -2.5377 3.5372 -0.9240 35 1 -2.6276 4.4541 -2.4509 36 1 -0.4384 5.4794 -2.0131 37 1 -0.2814 3.7108 -1.8860 38 1 5.1074 2.6274 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167843116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:33 Heat of formation + Delta-G solvation = -71.914147 kcal Electronic energy + Delta-G solvation = -22050.900566 eV Core-core repulsion = 18613.966098 eV Total energy + Delta-G solvation = -3436.934468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.66188 -41.63470 -39.72375 -38.83615 -35.86793 -33.60967 -32.42342 -31.58626 -30.51272 -28.90779 -28.09102 -24.62662 -24.20298 -23.20311 -22.99267 -21.19184 -19.64253 -18.87174 -18.18454 -17.95113 -17.27091 -16.90808 -16.42142 -16.37491 -16.05940 -15.60786 -15.27074 -15.17376 -14.92953 -14.71187 -14.38199 -14.06968 -13.91180 -13.48588 -13.29323 -12.82552 -12.74906 -12.59754 -12.56945 -12.48631 -11.89197 -11.84473 -11.53766 -11.08698 -10.83772 -10.69000 -10.54827 -10.49342 -9.99035 -8.65567 -8.16841 -6.10690 0.09282 0.25041 1.38552 1.42961 1.49898 2.00902 2.11150 2.40924 2.69418 3.12725 3.22382 3.52620 3.76594 3.96351 4.08752 4.18193 4.27477 4.32220 4.38241 4.45003 4.53525 4.71260 4.71728 4.82222 4.89978 4.95340 5.06179 5.09340 5.24207 5.24827 5.41933 5.58280 5.63858 5.75759 5.83323 5.91469 6.13012 6.33733 6.59458 6.96549 7.07937 7.47723 8.93883 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.004474 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.706642 B = 6257.542697 C = 6786.519118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.317 6.317 3 C 0.174 3.826 4 C -0.312 4.312 5 C 0.427 3.573 6 N -0.706 5.706 7 C 0.175 3.825 8 H 0.076 0.924 9 C -0.103 4.103 10 C 0.010 3.990 11 C -0.498 4.498 12 C 0.024 3.976 13 N -0.931 5.931 14 Si 0.936 3.064 15 H -0.278 1.278 16 H -0.251 1.251 17 H -0.295 1.295 18 C -0.016 4.016 19 C -0.113 4.113 20 N -0.559 5.559 21 C 0.168 3.832 22 C -0.072 4.072 23 F -0.139 7.139 24 H 0.065 0.935 25 H 0.130 0.870 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.408 0.592 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.028 0.972 32 H 0.007 0.993 33 H 0.262 0.738 34 H 0.029 0.971 35 H 0.031 0.969 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.642 -11.423 0.575 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.228 6.228 3 C 0.119 3.881 4 C -0.338 4.338 5 C 0.190 3.810 6 N -0.335 5.335 7 C 0.070 3.930 8 H 0.094 0.906 9 C -0.141 4.141 10 C -0.028 4.028 11 C -0.517 4.517 12 C -0.175 4.175 13 N -0.570 5.570 14 Si 0.763 3.237 15 H -0.203 1.203 16 H -0.175 1.175 17 H -0.222 1.222 18 C -0.054 4.054 19 C -0.152 4.152 20 N -0.280 5.280 21 C 0.009 3.991 22 C -0.097 4.097 23 F -0.119 7.119 24 H 0.083 0.917 25 H 0.148 0.852 26 H 0.085 0.915 27 H 0.171 0.829 28 H 0.244 0.756 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.740 -10.745 0.568 15.925 hybrid contribution -1.147 -0.205 -0.774 1.399 sum 10.593 -10.949 -0.206 15.236 Atomic orbital electron populations 1.23480 0.75479 1.06248 1.02675 1.86088 1.24158 1.25242 1.87335 1.19274 0.91063 0.85609 0.92150 1.21475 1.02107 0.90302 1.19891 1.18316 0.87853 0.86730 0.88098 1.44952 1.05620 1.05112 1.77777 1.20819 0.76512 0.99087 0.96546 0.90561 1.21700 0.97877 0.95750 0.98820 1.19291 0.91170 0.97128 0.95240 1.20632 1.17826 1.11368 1.01861 1.25571 0.96584 0.94781 1.00549 1.69965 1.28358 1.19233 1.39490 0.85874 0.77061 0.79548 0.81195 1.20341 1.17513 1.22217 1.19830 0.92628 0.96285 0.96626 1.22008 0.97202 1.00108 0.95917 1.67361 1.05035 1.31571 1.24079 1.22816 1.01543 0.83792 0.90981 1.17969 0.86043 0.84906 1.20793 1.91435 1.74819 1.50177 1.95429 0.91668 0.85187 0.91548 0.82890 0.75607 0.93324 0.92576 0.95328 0.97483 0.92890 0.95216 0.95059 0.93446 0.92835 0.78087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.84 113.37 1.12 1.39 16 2 O -0.32 -8.07 10.42 -91.36 -0.95 -9.02 16 3 C 0.17 4.73 6.74 22.76 0.15 4.89 16 4 C -0.31 -8.54 7.78 22.58 0.18 -8.36 16 5 C 0.43 12.29 7.63 132.93 1.01 13.31 16 6 N -0.71 -20.43 5.25 -324.74 -1.70 -22.13 16 7 C 0.17 5.67 2.04 44.96 0.09 5.76 16 8 H 0.08 2.43 6.45 -2.39 -0.02 2.42 16 9 C -0.10 -3.81 5.40 30.66 0.17 -3.65 16 10 C 0.01 0.45 5.97 30.10 0.18 0.63 16 11 C -0.50 -24.15 5.50 -16.17 -0.09 -24.24 16 12 C 0.02 1.23 5.46 84.66 0.46 1.69 16 13 N -0.93 -52.57 12.73 21.45 0.27 -52.30 16 14 Si 0.94 41.26 27.28 68.60 1.87 43.14 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.25 -10.28 6.45 99.48 0.64 -9.64 16 17 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 18 C -0.02 -0.63 5.62 30.25 0.17 -0.46 16 19 C -0.11 -3.97 5.41 30.80 0.17 -3.80 16 20 N -0.56 -15.43 10.39 -193.27 -2.01 -17.43 16 21 C 0.17 3.96 11.15 84.59 0.94 4.90 16 22 C -0.07 -1.89 7.35 22.53 0.17 -1.72 16 23 F -0.14 -3.76 17.17 44.97 0.77 -2.99 16 24 H 0.06 1.16 7.71 -2.39 -0.02 1.15 16 25 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.07 1.15 7.71 -2.38 -0.02 1.13 16 27 H 0.15 4.00 4.49 -2.91 -0.01 3.99 16 28 H 0.41 11.16 8.72 -92.71 -0.81 10.35 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.03 1.49 7.07 -2.38 -0.02 1.47 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.26 14.20 8.31 -92.70 -0.77 13.43 16 34 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.03 1.27 4.77 -2.39 -0.01 1.26 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.69 7.66 -2.39 -0.02 1.67 16 38 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -58.60 309.60 3.19 -55.41 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.22 Total: 15.00 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.71 Total: -9.67 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: -3.44 Total: -91.86 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.95 Total: -9.02 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.87 Total: 43.14 kcal Total: -58.60 3.19 -55.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.508 kcal (2) G-P(sol) polarization free energy of solvation -58.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds