Wall clock time and date at job start Tue Mar 31 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35809 * 116.99834 * 2 1 4 4 C 1.39456 * 120.80941 * 359.97438 * 3 2 1 5 5 C 1.37808 * 119.27320 * 180.02562 * 4 3 2 6 6 N 1.32067 * 120.94614 * 359.71953 * 5 4 3 7 7 C 1.32461 * 121.76874 * 0.56689 * 6 5 4 8 8 N 1.39185 * 119.68770 * 179.70595 * 7 6 5 9 9 C 1.46498 * 120.00223 * 359.73411 * 8 7 6 10 10 H 1.09009 * 109.40963 * 35.13516 * 9 8 7 11 11 C 1.52953 * 109.41478 * 154.99455 * 9 8 7 12 12 C 1.53236 * 109.41342 * 183.62593 * 11 9 8 13 13 C 1.51265 * 108.53501 * 305.39637 * 12 11 9 14 14 C 1.37879 * 120.83517 * 231.34808 * 13 12 11 15 15 N 1.31517 * 119.99840 * 179.97438 * 14 13 12 16 16 Si 1.86795 * 120.00341 * 359.97438 * 14 13 12 17 17 H 1.48500 * 109.47517 * 90.00198 * 16 14 13 18 18 H 1.48500 * 109.47104 * 210.00516 * 16 14 13 19 19 H 1.48501 * 109.47063 * 329.99729 * 16 14 13 20 20 C 1.51269 * 118.31229 * 51.32662 * 13 12 11 21 21 C 1.52955 * 109.35572 * 275.31814 * 9 8 7 22 22 C 1.39020 * 120.80995 * 179.97438 * 3 2 1 23 23 F 1.35103 * 120.49987 * 359.95498 * 22 3 2 24 24 H 1.09002 * 109.47060 * 299.99403 * 1 2 3 25 25 H 1.08998 * 109.47542 * 60.00182 * 1 2 3 26 26 H 1.09006 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.35641 * 0.04102 * 4 3 2 28 28 H 1.08003 * 119.53124 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99706 * 179.73032 * 8 7 6 30 30 H 1.09002 * 109.48451 * 303.61539 * 11 9 8 31 31 H 1.08999 * 109.48225 * 63.64428 * 11 9 8 32 32 H 1.08999 * 109.62424 * 65.09982 * 12 11 9 33 33 H 1.08999 * 109.62149 * 185.66576 * 12 11 9 34 34 H 0.96999 * 120.00064 * 179.97438 * 15 14 13 35 35 H 1.09008 * 109.62116 * 188.94429 * 20 13 12 36 36 H 1.08997 * 109.62743 * 68.37904 * 20 13 12 37 37 H 1.09004 * 109.47741 * 296.30658 * 21 9 8 38 38 H 1.08995 * 109.48405 * 56.34402 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3026 2.3903 -0.0005 5 6 1.9609 3.6009 -0.0011 6 7 3.2804 3.6565 0.0045 7 6 4.0246 2.5607 -0.0004 8 7 5.4121 2.6698 -0.0004 9 6 6.0430 3.9920 -0.0009 10 1 5.4401 4.6813 0.5905 11 6 7.4418 3.8881 0.6089 12 6 8.0664 5.2850 0.6916 13 6 8.0313 5.9097 -0.6856 14 6 9.1695 6.4494 -1.2460 15 7 9.1204 6.9881 -2.4448 16 14 10.7815 6.4157 -0.3027 17 1 11.5165 5.1657 -0.6230 18 1 11.6064 7.5881 -0.6902 19 1 10.5030 6.4666 1.1551 20 6 6.7159 5.9267 -1.4323 21 6 6.1406 4.5065 -1.4380 22 6 3.4327 1.3025 0.0005 23 9 4.1942 0.1866 0.0020 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2231 2.3557 -0.0003 28 1 1.3896 4.5175 -0.0011 29 1 5.9614 1.8703 0.0000 30 1 7.3715 3.4615 1.6095 31 1 8.0643 3.2480 -0.0162 32 1 7.4961 5.9004 1.3873 33 1 9.0990 5.2047 1.0313 34 1 9.9210 7.3681 -2.8390 35 1 6.8811 6.2590 -2.4573 36 1 6.0203 6.6015 -0.9334 37 1 6.7940 3.8519 -2.0149 38 1 5.1481 4.5182 -1.8882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:36 Heat of formation + Delta-G solvation = -54.093990 kcal Electronic energy + Delta-G solvation = -21866.574778 eV Core-core repulsion = 18430.413050 eV Total energy + Delta-G solvation = -3436.161728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.56886 -40.42559 -38.71314 -37.18619 -34.27758 -31.88723 -31.20279 -29.68106 -29.51635 -27.86177 -26.53606 -23.48952 -22.71223 -21.67735 -21.17246 -19.48813 -18.52868 -17.61851 -17.07946 -16.43154 -16.33482 -15.83878 -15.16198 -14.89525 -14.59196 -14.39503 -14.13262 -13.61406 -13.50595 -13.13004 -12.85860 -12.53053 -12.22288 -12.13071 -11.81646 -11.64733 -11.48293 -11.09905 -10.88283 -10.75378 -10.24641 -10.00937 -9.82619 -9.54281 -9.40887 -8.90014 -8.81761 -8.61735 -8.45508 -7.44497 -6.08573 -3.99591 1.18077 1.39145 2.77906 3.26878 3.36105 3.37070 3.54298 3.83919 4.26641 4.38802 4.61027 4.73000 4.81920 4.87316 4.96513 5.17162 5.19122 5.54867 5.68478 5.86294 5.87950 5.92734 6.15583 6.22126 6.51092 6.65215 6.75304 6.82257 6.95019 7.02935 7.09287 7.13797 7.38168 7.48467 7.61184 7.66852 7.81607 7.88364 8.34406 8.41681 8.98995 9.55627 11.00920 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039206 B = 0.003875 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.996852 B = 7223.964147 C = 7558.105430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.175 3.825 4 C -0.312 4.312 5 C 0.182 3.818 6 N -0.531 5.531 7 C 0.426 3.574 8 N -0.704 5.704 9 C 0.164 3.836 10 H 0.083 0.917 11 C -0.116 4.116 12 C -0.010 4.010 13 C -0.489 4.489 14 C 0.075 3.925 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.267 1.267 20 C 0.014 3.986 21 C -0.113 4.113 22 C -0.072 4.072 23 F -0.135 7.135 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.406 0.594 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.020 0.980 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.057 0.943 36 H 0.007 0.993 37 H 0.046 0.954 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.596 -10.745 5.122 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.218 6.218 3 C 0.121 3.879 4 C -0.337 4.337 5 C 0.023 3.977 6 N -0.252 5.252 7 C 0.186 3.814 8 N -0.332 5.332 9 C 0.061 3.939 10 H 0.101 0.899 11 C -0.155 4.155 12 C -0.048 4.048 13 C -0.508 4.508 14 C -0.127 4.127 15 N -0.527 5.527 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.024 4.024 21 C -0.152 4.152 22 C -0.100 4.100 23 F -0.114 7.114 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.157 0.843 28 H 0.180 0.820 29 H 0.242 0.758 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.827 -9.927 4.984 18.527 hybrid contribution 0.530 -1.315 0.331 1.456 sum -14.298 -11.242 5.315 18.949 Atomic orbital electron populations 1.23129 0.77685 1.04123 1.01810 1.86091 1.21944 1.25911 1.87888 1.19022 0.90242 0.85523 0.93157 1.21749 1.01096 0.91975 1.18856 1.22315 0.88942 0.97052 0.89405 1.67512 1.06909 1.28320 1.22433 1.18259 0.87072 0.86547 0.89511 1.45308 1.00717 1.10713 1.76467 1.21092 0.93182 0.81063 0.98523 0.89851 1.21904 0.94882 1.00977 0.97732 1.19689 0.96144 0.91506 0.97496 1.20063 0.94578 1.36805 0.99393 1.24851 0.98386 0.94778 0.94684 1.69841 1.29167 1.38595 1.15064 0.86676 0.83584 0.77580 0.80603 1.20472 1.21650 1.19195 1.19334 0.93783 0.90132 0.99185 1.21973 0.98398 1.00757 0.94031 1.17180 0.86278 0.82901 1.23609 1.91424 1.74786 1.49710 1.95456 0.92245 0.92195 0.88048 0.84290 0.81996 0.75845 0.94403 0.92604 0.96157 0.94883 0.92612 0.92461 0.97509 0.93549 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.84 101.05 0.99 1.19 16 2 O -0.31 -3.80 10.41 -19.14 -0.20 -4.00 16 3 C 0.17 2.39 6.73 -38.84 -0.26 2.13 16 4 C -0.31 -3.54 9.10 -39.29 -0.36 -3.89 16 5 C 0.18 2.30 11.16 -17.61 -0.20 2.10 16 6 N -0.53 -8.73 9.20 -12.43 -0.11 -8.84 16 7 C 0.43 7.18 7.46 -154.82 -1.15 6.02 16 8 N -0.70 -12.16 5.22 -53.93 -0.28 -12.44 16 9 C 0.16 3.21 2.37 -67.98 -0.16 3.05 16 10 H 0.08 1.73 7.54 -51.92 -0.39 1.34 16 11 C -0.12 -2.31 5.40 -26.63 -0.14 -2.46 16 12 C -0.01 -0.23 5.59 -27.48 -0.15 -0.39 16 13 C -0.49 -12.81 5.51 -98.92 -0.55 -13.35 16 14 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 15 N -0.89 -25.62 12.73 55.43 0.71 -24.91 16 16 Si 0.89 20.98 27.27 -169.99 -4.64 16.34 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.09 6.46 56.52 0.37 -5.73 16 20 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 21 C -0.11 -2.47 5.51 -26.64 -0.15 -2.61 16 22 C -0.07 -1.14 7.36 -38.99 -0.29 -1.43 16 23 F -0.13 -2.21 16.53 2.25 0.04 -2.17 16 24 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 25 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 26 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.14 1.10 6.46 -52.49 -0.34 0.76 16 28 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.41 6.42 8.06 -40.82 -0.33 6.09 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.03 0.75 4.78 -51.93 -0.25 0.50 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.06 1.58 7.07 -51.92 -0.37 1.22 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -30.14 312.20 -7.49 -37.63 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.03 Total: 1.19 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.68 Total: -7.50 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.31 Total: -46.20 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.20 Total: -4.00 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.64 Total: 16.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.14 -7.49 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.465 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds