Wall clock time and date at job start Tue Mar 31 2020 01:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35809 * 116.99834 * 2 1 4 4 C 1.39456 * 120.80941 * 359.97438 * 3 2 1 5 5 C 1.37808 * 119.27320 * 180.02562 * 4 3 2 6 6 N 1.32067 * 120.94614 * 359.71953 * 5 4 3 7 7 C 1.32461 * 121.76874 * 0.56689 * 6 5 4 8 8 N 1.39185 * 119.68770 * 179.70595 * 7 6 5 9 9 C 1.46498 * 120.00223 * 359.73411 * 8 7 6 10 10 H 1.09009 * 109.40963 * 35.13516 * 9 8 7 11 11 C 1.52953 * 109.41478 * 154.99455 * 9 8 7 12 12 C 1.53236 * 109.41342 * 183.62593 * 11 9 8 13 13 C 1.51265 * 108.53501 * 305.39637 * 12 11 9 14 14 C 1.37879 * 120.83517 * 231.34808 * 13 12 11 15 15 N 1.31517 * 119.99840 * 179.97438 * 14 13 12 16 16 Si 1.86795 * 120.00341 * 359.97438 * 14 13 12 17 17 H 1.48500 * 109.47517 * 90.00198 * 16 14 13 18 18 H 1.48500 * 109.47104 * 210.00516 * 16 14 13 19 19 H 1.48501 * 109.47063 * 329.99729 * 16 14 13 20 20 C 1.51269 * 118.31229 * 51.32662 * 13 12 11 21 21 C 1.52955 * 109.35572 * 275.31814 * 9 8 7 22 22 C 1.39020 * 120.80995 * 179.97438 * 3 2 1 23 23 F 1.35103 * 120.49987 * 359.95498 * 22 3 2 24 24 H 1.09002 * 109.47060 * 299.99403 * 1 2 3 25 25 H 1.08998 * 109.47542 * 60.00182 * 1 2 3 26 26 H 1.09006 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.35641 * 0.04102 * 4 3 2 28 28 H 1.08003 * 119.53124 * 180.02562 * 5 4 3 29 29 H 0.97003 * 119.99706 * 179.73032 * 8 7 6 30 30 H 1.09002 * 109.48451 * 303.61539 * 11 9 8 31 31 H 1.08999 * 109.48225 * 63.64428 * 11 9 8 32 32 H 1.08999 * 109.62424 * 65.09982 * 12 11 9 33 33 H 1.08999 * 109.62149 * 185.66576 * 12 11 9 34 34 H 0.96999 * 120.00064 * 179.97438 * 15 14 13 35 35 H 1.09008 * 109.62116 * 188.94429 * 20 13 12 36 36 H 1.08997 * 109.62743 * 68.37904 * 20 13 12 37 37 H 1.09004 * 109.47741 * 296.30658 * 21 9 8 38 38 H 1.08995 * 109.48405 * 56.34402 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3026 2.3903 -0.0005 5 6 1.9609 3.6009 -0.0011 6 7 3.2804 3.6565 0.0045 7 6 4.0246 2.5607 -0.0004 8 7 5.4121 2.6698 -0.0004 9 6 6.0430 3.9920 -0.0009 10 1 5.4401 4.6813 0.5905 11 6 7.4418 3.8881 0.6089 12 6 8.0664 5.2850 0.6916 13 6 8.0313 5.9097 -0.6856 14 6 9.1695 6.4494 -1.2460 15 7 9.1204 6.9881 -2.4448 16 14 10.7815 6.4157 -0.3027 17 1 11.5165 5.1657 -0.6230 18 1 11.6064 7.5881 -0.6902 19 1 10.5030 6.4666 1.1551 20 6 6.7159 5.9267 -1.4323 21 6 6.1406 4.5065 -1.4380 22 6 3.4327 1.3025 0.0005 23 9 4.1942 0.1866 0.0020 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2231 2.3557 -0.0003 28 1 1.3896 4.5175 -0.0011 29 1 5.9614 1.8703 0.0000 30 1 7.3715 3.4615 1.6095 31 1 8.0643 3.2480 -0.0162 32 1 7.4961 5.9004 1.3873 33 1 9.0990 5.2047 1.0313 34 1 9.9210 7.3681 -2.8390 35 1 6.8811 6.2590 -2.4573 36 1 6.0203 6.6015 -0.9334 37 1 6.7940 3.8519 -2.0149 38 1 5.1481 4.5182 -1.8882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:36 Heat of formation + Delta-G solvation = -72.816604 kcal Electronic energy + Delta-G solvation = -21867.386651 eV Core-core repulsion = 18430.413050 eV Total energy + Delta-G solvation = -3436.973601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.75355 -41.45891 -39.82615 -38.67299 -35.83060 -33.68183 -32.23440 -31.44515 -30.88788 -28.93391 -27.81908 -24.65426 -24.07596 -23.42546 -22.70462 -21.17797 -19.57725 -18.79069 -18.19742 -18.02898 -17.30581 -17.22475 -16.35341 -16.20749 -16.11889 -15.62192 -15.15898 -15.02764 -14.86526 -14.54807 -14.45328 -14.01918 -13.92055 -13.57688 -13.15570 -12.87621 -12.73666 -12.58450 -12.46710 -12.33309 -11.91937 -11.80275 -11.40440 -11.27771 -10.82667 -10.55749 -10.48953 -10.45537 -9.81765 -8.70179 -8.14695 -6.09618 0.11483 0.33500 1.40550 1.43310 1.52366 1.83361 2.41689 2.42721 2.76325 3.12941 3.18621 3.64051 3.76056 3.87072 4.05067 4.27167 4.38108 4.41608 4.53896 4.60351 4.72900 4.74907 4.79837 4.92646 4.95078 5.02150 5.06097 5.12345 5.23943 5.26830 5.46069 5.58449 5.64307 5.77727 5.84534 6.12118 6.19681 6.34399 6.41232 6.96980 7.20743 7.48354 8.96453 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.039206 B = 0.003875 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.996852 B = 7223.964147 C = 7558.105430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.173 3.827 4 C -0.289 4.289 5 C 0.176 3.824 6 N -0.563 5.563 7 C 0.408 3.592 8 N -0.710 5.710 9 C 0.183 3.817 10 H 0.074 0.926 11 C -0.110 4.110 12 C -0.013 4.013 13 C -0.500 4.500 14 C 0.019 3.981 15 N -0.934 5.934 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.294 1.294 19 H -0.250 1.250 20 C 0.013 3.987 21 C -0.098 4.098 22 C -0.095 4.095 23 F -0.144 7.144 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.181 0.819 28 H 0.197 0.803 29 H 0.411 0.589 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.038 0.962 34 H 0.262 0.738 35 H 0.022 0.978 36 H 0.000 1.000 37 H 0.032 0.968 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.546 -12.002 6.794 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.119 3.881 4 C -0.313 4.313 5 C 0.018 3.982 6 N -0.284 5.284 7 C 0.170 3.830 8 N -0.340 5.340 9 C 0.079 3.921 10 H 0.092 0.908 11 C -0.148 4.148 12 C -0.051 4.051 13 C -0.519 4.519 14 C -0.179 4.179 15 N -0.574 5.574 16 Si 0.770 3.230 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.174 1.174 20 C -0.025 4.025 21 C -0.137 4.137 22 C -0.123 4.123 23 F -0.123 7.123 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.140 0.860 27 H 0.198 0.802 28 H 0.213 0.787 29 H 0.247 0.753 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.019 0.981 37 H 0.051 0.949 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.835 -11.216 6.679 21.303 hybrid contribution 0.852 -0.961 -0.219 1.303 sum -15.983 -12.177 6.460 21.106 Atomic orbital electron populations 1.23540 0.74846 1.06168 1.03321 1.86086 1.24839 1.25400 1.87459 1.19195 0.89718 0.86893 0.92328 1.22152 1.02944 0.90435 1.15764 1.22963 0.87935 0.99052 0.88222 1.67508 1.08822 1.28623 1.23428 1.18338 0.86769 0.87229 0.90643 1.44959 1.01311 1.09621 1.78071 1.20622 0.93194 0.82216 0.96099 0.90828 1.21780 0.94564 0.99096 0.99404 1.19703 0.96914 0.93061 0.95396 1.20662 0.94534 1.35824 1.00866 1.25669 1.01862 0.94860 0.95498 1.69993 1.29893 1.40535 1.16943 0.85756 0.79613 0.77407 0.80219 1.19930 1.22084 1.17368 1.19262 0.94151 0.92076 0.97025 1.21756 0.97615 0.98307 0.96068 1.17395 0.87468 0.82354 1.25055 1.91387 1.75229 1.50042 1.95681 0.90531 0.90707 0.86019 0.80184 0.78675 0.75259 0.91550 0.92737 0.95743 0.94362 0.92872 0.95956 0.98114 0.94895 0.94555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.84 113.37 1.12 1.27 16 2 O -0.33 -7.26 10.41 -91.41 -0.95 -8.21 16 3 C 0.17 4.36 6.73 22.75 0.15 4.51 16 4 C -0.29 -5.51 9.10 22.46 0.20 -5.31 16 5 C 0.18 3.94 11.16 84.56 0.94 4.89 16 6 N -0.56 -17.79 9.20 -193.25 -1.78 -19.57 16 7 C 0.41 13.49 7.46 132.96 0.99 14.48 16 8 N -0.71 -24.22 5.22 -324.55 -1.69 -25.91 16 9 C 0.18 7.09 2.37 44.96 0.11 7.19 16 10 H 0.07 3.02 7.54 -2.38 -0.02 3.00 16 11 C -0.11 -4.22 5.40 30.66 0.17 -4.05 16 12 C -0.01 -0.56 5.59 30.11 0.17 -0.40 16 13 C -0.50 -26.45 5.51 -16.17 -0.09 -26.54 16 14 C 0.02 1.05 5.46 84.65 0.46 1.51 16 15 N -0.93 -55.69 12.73 21.45 0.27 -55.41 16 16 Si 0.94 43.13 27.27 68.60 1.87 45.00 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.25 -10.60 6.46 99.48 0.64 -9.96 16 20 C 0.01 0.67 5.97 30.10 0.18 0.85 16 21 C -0.10 -4.39 5.51 30.65 0.17 -4.22 16 22 C -0.10 -2.94 7.36 22.65 0.17 -2.78 16 23 F -0.14 -4.69 16.53 44.97 0.74 -3.95 16 24 H 0.08 0.56 7.71 -2.39 -0.02 0.54 16 25 H 0.07 0.58 7.71 -2.39 -0.02 0.56 16 26 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.18 1.87 6.46 -2.91 -0.02 1.85 16 28 H 0.20 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.41 12.86 8.06 -92.71 -0.75 12.11 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.65 4.78 -2.39 -0.01 1.64 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.09 16 35 H 0.02 1.28 7.07 -2.38 -0.02 1.26 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 37 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -67.33 312.20 3.48 -63.85 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.28 Total: 12.79 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 4.74 Total: -8.59 kcal Atomic # 7 Polarization: -97.70 SS G_CDS: -3.20 Total: -100.90 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.95 Total: -8.21 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.74 Total: -3.95 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.87 Total: 45.00 kcal Total: -67.33 3.48 -63.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.965 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds