Wall clock time and date at job start Tue Mar 31 2020 01:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36089 * 117.00183 * 2 1 4 4 C 1.38626 * 120.50983 * 270.25141 * 3 2 1 5 5 F 1.35096 * 119.64435 * 359.97438 * 4 3 2 6 6 N 1.32151 * 120.71155 * 180.25992 * 4 3 2 7 7 C 1.32026 * 121.90029 * 359.74047 * 6 4 3 8 8 C 1.37912 * 120.95581 * 0.02562 * 7 6 4 9 9 C 1.39409 * 119.17550 * 359.97438 * 8 7 6 10 10 N 1.39469 * 120.85410 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00670 * 0.02562 * 10 9 8 12 12 H 1.08996 * 109.41143 * 35.14158 * 11 10 9 13 13 C 1.52959 * 109.41752 * 154.99881 * 11 10 9 14 14 C 1.53224 * 109.40885 * 183.70422 * 13 11 10 15 15 C 1.51269 * 108.53665 * 305.37482 * 14 13 11 16 16 C 1.37884 * 120.84868 * 231.32195 * 15 14 13 17 17 N 1.31514 * 119.99707 * 359.97438 * 16 15 14 18 18 Si 1.86796 * 119.99956 * 180.27194 * 16 15 14 19 19 H 1.48503 * 109.47407 * 269.72718 * 18 16 15 20 20 H 1.48505 * 109.47281 * 29.72474 * 18 16 15 21 21 H 1.48501 * 109.47274 * 149.72572 * 18 16 15 22 22 C 1.51270 * 118.29987 * 51.59130 * 15 14 13 23 23 C 1.52964 * 109.41298 * 275.35021 * 11 10 9 24 24 H 1.09004 * 109.47316 * 300.00370 * 1 2 3 25 25 H 1.08999 * 109.47090 * 59.99871 * 1 2 3 26 26 H 1.08995 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.52790 * 180.02562 * 7 6 4 28 28 H 1.08001 * 120.40727 * 180.02562 * 8 7 6 29 29 H 0.97003 * 119.99718 * 180.02562 * 10 9 8 30 30 H 1.09006 * 109.48509 * 63.72094 * 13 11 10 31 31 H 1.09000 * 109.49059 * 303.69114 * 13 11 10 32 32 H 1.08996 * 109.62955 * 185.65861 * 14 13 11 33 33 H 1.09003 * 109.78452 * 65.17475 * 14 13 11 34 34 H 0.97005 * 119.99656 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.62092 * 68.12420 * 22 15 14 36 36 H 1.09002 * 109.62108 * 188.68579 * 22 15 14 37 37 H 1.09000 * 109.48309 * 296.27584 * 23 11 10 38 38 H 1.08996 * 109.48053 * 56.31671 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 2.3617 1.8420 -1.1943 5 9 2.0524 1.2450 -2.3661 6 7 2.9663 3.0171 -1.1990 7 6 3.2894 3.6399 -0.0806 8 6 3.0064 3.0828 1.1488 9 6 2.3692 1.8441 1.2032 10 7 2.0669 1.2483 2.4275 11 6 2.4187 1.9250 3.6782 12 1 2.3065 3.0018 3.5515 13 6 1.4900 1.4450 4.7948 14 6 1.7968 2.2198 6.0806 15 6 3.2704 2.0741 6.3898 16 6 3.6943 1.6675 7.6373 17 7 2.8132 1.4013 8.5766 18 14 5.5202 1.5029 7.9956 19 1 5.9652 0.1230 7.6746 20 1 6.2772 2.4731 7.1643 21 1 5.7698 1.7818 9.4326 22 6 4.2672 2.3919 5.2973 23 6 3.8706 1.6055 4.0382 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.7825 4.5995 -0.1291 28 1 3.2744 3.6003 2.0582 29 1 1.6236 0.3858 2.4508 30 1 1.6472 0.3800 4.9658 31 1 0.4535 1.6175 4.5050 32 1 1.2083 1.8126 6.9027 33 1 1.5541 3.2735 5.9433 34 1 3.1114 1.1149 9.4542 35 1 4.2497 3.4610 5.0854 36 1 5.2666 2.0954 5.6160 37 1 3.9716 0.5367 4.2270 38 1 4.5215 1.8919 3.2121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:41 Heat of formation + Delta-G solvation = -55.361752 kcal Electronic energy + Delta-G solvation = -22115.198962 eV Core-core repulsion = 18678.982261 eV Total energy + Delta-G solvation = -3436.216702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.92413 -40.46869 -37.91734 -37.73161 -34.75687 -32.15602 -30.45146 -30.18395 -29.60823 -27.29437 -26.76832 -23.40406 -23.14617 -21.69089 -21.45233 -19.69179 -18.24106 -17.97615 -17.37118 -16.38437 -16.23313 -15.62890 -15.14395 -15.04634 -14.61502 -14.49695 -14.23955 -13.63296 -13.34699 -13.26213 -12.93922 -12.65124 -12.48065 -12.22209 -11.88549 -11.74858 -11.37709 -11.10036 -10.84730 -10.59435 -10.57131 -10.25341 -10.10858 -9.66533 -9.46604 -9.11791 -8.88050 -8.80625 -8.58662 -7.67397 -6.22303 -4.14311 0.88065 1.39625 3.18423 3.27378 3.29226 3.29712 3.35557 3.69652 3.93656 4.28336 4.61977 4.92645 5.02269 5.11229 5.17980 5.23223 5.40444 5.46072 5.54090 5.64268 5.77602 5.87908 5.93814 6.29674 6.40612 6.42062 6.52477 6.59882 6.68144 6.83735 6.94830 7.16573 7.25468 7.40421 7.51885 7.55145 7.66073 7.75633 7.78699 8.23533 8.83275 9.42216 10.87052 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028958 B = 0.004355 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.681796 B = 6428.579129 C = 6905.941192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C -0.073 4.073 4 C 0.329 3.671 5 F -0.112 7.112 6 N -0.553 5.553 7 C 0.167 3.833 8 C -0.251 4.251 9 C 0.273 3.727 10 N -0.710 5.710 11 C 0.153 3.847 12 H 0.075 0.925 13 C -0.114 4.114 14 C 0.014 3.986 15 C -0.494 4.494 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.266 1.266 21 H -0.289 1.289 22 C -0.013 4.013 23 C -0.120 4.120 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.167 0.833 28 H 0.149 0.851 29 H 0.403 0.597 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.006 0.994 34 H 0.266 0.734 35 H 0.019 0.981 36 H 0.033 0.967 37 H 0.056 0.944 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 0.786 -13.305 13.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C -0.127 4.127 4 C 0.175 3.825 5 F -0.091 7.091 6 N -0.274 5.274 7 C 0.013 3.987 8 C -0.277 4.277 9 C 0.155 3.845 10 N -0.333 5.333 11 C 0.051 3.949 12 H 0.093 0.907 13 C -0.152 4.152 14 C -0.024 4.024 15 C -0.513 4.513 16 C -0.126 4.126 17 N -0.525 5.525 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.191 1.191 21 H -0.215 1.215 22 C -0.051 4.051 23 C -0.159 4.159 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.184 0.816 28 H 0.166 0.834 29 H 0.238 0.762 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.540 0.974 -13.699 13.966 hybrid contribution 0.346 -0.910 0.825 1.276 sum -2.193 0.065 -12.874 13.060 Atomic orbital electron populations 1.23114 0.79956 1.03251 1.00669 1.86217 1.19518 1.23333 1.93961 1.18665 1.11360 0.92068 0.90581 1.18234 0.95249 0.88768 0.80212 1.91582 1.89992 1.81493 1.46083 1.67108 1.18424 1.08681 1.33198 1.22202 0.92961 0.97936 0.85582 1.21791 1.08448 0.96786 1.00705 1.18318 0.89617 0.90688 0.85878 1.45416 1.62118 1.23193 1.02591 1.21243 0.96289 0.96310 0.81101 0.90711 1.21927 0.95259 1.01385 0.96665 1.19328 0.96638 0.94135 0.92287 1.20008 0.91072 1.44992 0.95193 1.24851 0.97597 0.94466 0.95642 1.69826 1.33773 1.44962 1.03911 0.86657 0.85696 0.78830 0.77171 1.20391 1.19119 1.21548 1.19804 0.96752 0.95414 0.93161 1.22116 0.93972 1.01351 0.98470 0.93537 0.93629 0.88636 0.81596 0.83367 0.76160 0.92540 0.94546 0.92010 0.97527 0.92449 0.96240 0.94835 0.92561 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.13 101.05 1.13 1.39 16 2 O -0.32 -4.46 9.65 -20.02 -0.19 -4.65 16 3 C -0.07 -1.08 5.78 -38.91 -0.23 -1.31 16 4 C 0.33 5.02 8.42 -17.27 -0.15 4.87 16 5 F -0.11 -1.72 17.13 2.25 0.04 -1.68 16 6 N -0.55 -8.18 10.37 -13.58 -0.14 -8.32 16 7 C 0.17 2.08 11.17 -17.59 -0.20 1.88 16 8 C -0.25 -3.34 8.91 -39.26 -0.35 -3.69 16 9 C 0.27 3.98 6.69 -83.42 -0.56 3.42 16 10 N -0.71 -10.52 5.24 -51.93 -0.27 -10.79 16 11 C 0.15 2.57 2.06 -67.97 -0.14 2.43 16 12 H 0.07 1.24 6.55 -51.93 -0.34 0.90 16 13 C -0.11 -2.13 5.40 -26.64 -0.14 -2.27 16 14 C 0.01 0.32 5.97 -27.49 -0.16 0.15 16 15 C -0.49 -12.04 5.50 -98.92 -0.54 -12.59 16 16 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 17 N -0.89 -24.35 12.73 55.43 0.71 -23.64 16 18 Si 0.89 20.19 27.28 -169.99 -4.64 15.55 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -5.85 6.45 56.52 0.36 -5.49 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.01 -0.28 5.62 -27.26 -0.15 -0.43 16 23 C -0.12 -2.22 5.49 -26.41 -0.15 -2.36 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.15 1.88 6.37 -52.49 -0.33 1.54 16 29 H 0.40 5.71 8.06 -40.82 -0.33 5.38 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.56 7.07 -51.93 -0.37 1.20 16 33 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.03 0.72 4.77 -51.93 -0.25 0.47 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.64 7.81 -51.93 -0.41 0.24 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -27.36 312.83 -6.52 -33.88 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.00 Total: 1.51 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.74 Total: -6.58 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.29 Total: -42.75 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.19 Total: -4.65 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.64 Total: 15.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.36 -6.52 -33.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.479 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds