Wall clock time and date at job start Tue Mar 31 2020 01:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36089 * 117.00183 * 2 1 4 4 C 1.38626 * 120.50983 * 270.25141 * 3 2 1 5 5 F 1.35096 * 119.64435 * 359.97438 * 4 3 2 6 6 N 1.32151 * 120.71155 * 180.25992 * 4 3 2 7 7 C 1.32026 * 121.90029 * 359.74047 * 6 4 3 8 8 C 1.37912 * 120.95581 * 0.02562 * 7 6 4 9 9 C 1.39409 * 119.17550 * 359.97438 * 8 7 6 10 10 N 1.39469 * 120.85410 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00670 * 0.02562 * 10 9 8 12 12 H 1.08996 * 109.41143 * 35.14158 * 11 10 9 13 13 C 1.52959 * 109.41752 * 154.99881 * 11 10 9 14 14 C 1.53224 * 109.40885 * 183.70422 * 13 11 10 15 15 C 1.51269 * 108.53665 * 305.37482 * 14 13 11 16 16 C 1.37884 * 120.84868 * 231.32195 * 15 14 13 17 17 N 1.31514 * 119.99707 * 359.97438 * 16 15 14 18 18 Si 1.86796 * 119.99956 * 180.27194 * 16 15 14 19 19 H 1.48503 * 109.47407 * 269.72718 * 18 16 15 20 20 H 1.48505 * 109.47281 * 29.72474 * 18 16 15 21 21 H 1.48501 * 109.47274 * 149.72572 * 18 16 15 22 22 C 1.51270 * 118.29987 * 51.59130 * 15 14 13 23 23 C 1.52964 * 109.41298 * 275.35021 * 11 10 9 24 24 H 1.09004 * 109.47316 * 300.00370 * 1 2 3 25 25 H 1.08999 * 109.47090 * 59.99871 * 1 2 3 26 26 H 1.08995 * 109.47017 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.52790 * 180.02562 * 7 6 4 28 28 H 1.08001 * 120.40727 * 180.02562 * 8 7 6 29 29 H 0.97003 * 119.99718 * 180.02562 * 10 9 8 30 30 H 1.09006 * 109.48509 * 63.72094 * 13 11 10 31 31 H 1.09000 * 109.49059 * 303.69114 * 13 11 10 32 32 H 1.08996 * 109.62955 * 185.65861 * 14 13 11 33 33 H 1.09003 * 109.78452 * 65.17475 * 14 13 11 34 34 H 0.97005 * 119.99656 * 179.97438 * 17 16 15 35 35 H 1.09003 * 109.62092 * 68.12420 * 22 15 14 36 36 H 1.09002 * 109.62108 * 188.68579 * 22 15 14 37 37 H 1.09000 * 109.48309 * 296.27584 * 23 11 10 38 38 H 1.08996 * 109.48053 * 56.31671 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0469 1.2125 0.0000 4 6 2.3617 1.8420 -1.1943 5 9 2.0524 1.2450 -2.3661 6 7 2.9663 3.0171 -1.1990 7 6 3.2894 3.6399 -0.0806 8 6 3.0064 3.0828 1.1488 9 6 2.3692 1.8441 1.2032 10 7 2.0669 1.2483 2.4275 11 6 2.4187 1.9250 3.6782 12 1 2.3065 3.0018 3.5515 13 6 1.4900 1.4450 4.7948 14 6 1.7968 2.2198 6.0806 15 6 3.2704 2.0741 6.3898 16 6 3.6943 1.6675 7.6373 17 7 2.8132 1.4013 8.5766 18 14 5.5202 1.5029 7.9956 19 1 5.9652 0.1230 7.6746 20 1 6.2772 2.4731 7.1643 21 1 5.7698 1.7818 9.4326 22 6 4.2672 2.3919 5.2973 23 6 3.8706 1.6055 4.0382 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.7825 4.5995 -0.1291 28 1 3.2744 3.6003 2.0582 29 1 1.6236 0.3858 2.4508 30 1 1.6472 0.3800 4.9658 31 1 0.4535 1.6175 4.5050 32 1 1.2083 1.8126 6.9027 33 1 1.5541 3.2735 5.9433 34 1 3.1114 1.1149 9.4542 35 1 4.2497 3.4610 5.0854 36 1 5.2666 2.0954 5.6160 37 1 3.9716 0.5367 4.2270 38 1 4.5215 1.8919 3.2121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:40 Heat of formation + Delta-G solvation = -72.114694 kcal Electronic energy + Delta-G solvation = -22115.925424 eV Core-core repulsion = 18678.982261 eV Total energy + Delta-G solvation = -3436.943164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.05592 -41.55307 -39.19839 -38.89317 -36.21143 -33.84263 -31.77033 -31.34740 -31.09684 -28.72441 -27.78588 -24.69755 -24.32552 -23.25276 -22.94104 -21.19932 -19.39909 -19.05429 -18.50291 -17.91474 -17.42226 -16.80144 -16.41156 -16.32985 -16.13272 -15.62874 -15.24495 -15.11910 -14.68591 -14.48779 -14.36106 -14.07282 -13.97578 -13.54276 -13.45185 -12.91690 -12.74790 -12.69610 -12.55511 -12.08090 -11.86660 -11.68009 -11.57294 -11.32565 -10.88635 -10.55833 -10.53900 -10.47572 -9.88971 -8.84196 -8.16637 -6.10089 -0.16124 0.30606 1.38902 1.43697 1.50588 2.09556 2.35621 2.41492 2.62232 2.89572 3.13434 3.62497 3.88891 4.00109 4.04060 4.17593 4.37486 4.38564 4.46554 4.48560 4.69612 4.71958 4.78395 4.84825 4.94680 4.97686 5.06935 5.10276 5.25274 5.28004 5.44418 5.60491 5.64778 5.76307 5.83801 6.01229 6.32704 6.34566 6.58755 6.74230 6.97374 7.48344 8.94069 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028958 B = 0.004355 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.681796 B = 6428.579129 C = 6905.941192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.332 6.332 3 C -0.072 4.072 4 C 0.311 3.689 5 F -0.119 7.119 6 N -0.567 5.567 7 C 0.173 3.827 8 C -0.249 4.249 9 C 0.263 3.737 10 N -0.708 5.708 11 C 0.169 3.831 12 H 0.085 0.915 13 C -0.103 4.103 14 C 0.010 3.990 15 C -0.497 4.497 16 C 0.022 3.978 17 N -0.932 5.932 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.250 1.250 21 H -0.296 1.296 22 C -0.016 4.016 23 C -0.113 4.113 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.117 0.883 27 H 0.204 0.796 28 H 0.160 0.840 29 H 0.406 0.594 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 1.593 -15.092 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.247 6.247 3 C -0.126 4.126 4 C 0.158 3.842 5 F -0.098 7.098 6 N -0.287 5.287 7 C 0.019 3.981 8 C -0.275 4.275 9 C 0.146 3.854 10 N -0.333 5.333 11 C 0.065 3.935 12 H 0.103 0.897 13 C -0.141 4.141 14 C -0.028 4.028 15 C -0.517 4.517 16 C -0.176 4.176 17 N -0.572 5.572 18 Si 0.763 3.237 19 H -0.205 1.205 20 H -0.174 1.174 21 H -0.223 1.223 22 C -0.054 4.054 23 C -0.152 4.152 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.221 0.779 28 H 0.177 0.823 29 H 0.242 0.758 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.854 1.786 -15.531 15.743 hybrid contribution 0.069 -1.122 1.307 1.724 sum -1.785 0.663 -14.225 14.351 Atomic orbital electron populations 1.23300 0.78146 1.04875 1.00933 1.86172 1.21268 1.23238 1.94012 1.18718 1.11234 0.92074 0.90549 1.18406 0.96191 0.89342 0.80254 1.91559 1.90158 1.81684 1.46361 1.67175 1.18553 1.08627 1.34386 1.22796 0.91913 0.98775 0.84569 1.21991 1.07788 0.96198 1.01516 1.18437 0.90274 0.91302 0.85423 1.45086 1.62834 1.23352 1.01997 1.20887 0.94575 0.96811 0.81214 0.89731 1.21694 0.97061 0.99910 0.95483 1.19285 0.95677 0.94546 0.93303 1.20670 0.92608 1.42734 0.95668 1.25576 1.00767 0.95247 0.96000 1.69965 1.35349 1.47558 1.04287 0.85875 0.82139 0.78942 0.76723 1.20469 1.17413 1.22269 1.19835 0.95658 0.96565 0.93388 1.21992 0.95526 0.99990 0.97706 0.93202 0.93387 0.86437 0.77932 0.82291 0.75824 0.93729 0.92571 0.95479 0.97320 0.92941 0.94947 0.95179 0.93919 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.13 113.37 1.26 1.69 16 2 O -0.33 -8.81 9.65 -94.57 -0.91 -9.73 16 3 C -0.07 -2.01 5.78 22.71 0.13 -1.87 16 4 C 0.31 8.97 8.42 84.74 0.71 9.69 16 5 F -0.12 -3.50 17.13 44.97 0.77 -2.72 16 6 N -0.57 -15.38 10.37 -196.88 -2.04 -17.42 16 7 C 0.17 3.70 11.17 84.59 0.94 4.64 16 8 C -0.25 -5.75 8.91 22.47 0.20 -5.55 16 9 C 0.26 6.95 6.69 38.55 0.26 7.21 16 10 N -0.71 -19.19 5.24 -318.21 -1.67 -20.85 16 11 C 0.17 5.22 2.06 44.97 0.09 5.32 16 12 H 0.08 2.51 6.55 -2.39 -0.02 2.49 16 13 C -0.10 -3.72 5.40 30.66 0.17 -3.55 16 14 C 0.01 0.45 5.97 30.10 0.18 0.63 16 15 C -0.50 -24.04 5.50 -16.17 -0.09 -24.13 16 16 C 0.02 1.16 5.46 84.66 0.46 1.63 16 17 N -0.93 -52.63 12.73 21.45 0.27 -52.36 16 18 Si 0.94 41.38 27.28 68.60 1.87 43.25 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 20 H -0.25 -10.27 6.45 99.48 0.64 -9.63 16 21 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 22 C -0.02 -0.66 5.62 30.25 0.17 -0.49 16 23 C -0.11 -3.87 5.49 30.80 0.17 -3.71 16 24 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 28 H 0.16 3.34 6.37 -2.91 -0.02 3.32 16 29 H 0.41 10.65 8.06 -92.71 -0.75 9.90 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.40 7.07 -2.39 -0.02 1.38 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.03 1.22 4.77 -2.39 -0.01 1.21 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.79 7.81 -2.39 -0.02 1.77 16 Total: -1.00 -59.03 312.83 3.23 -55.79 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.28 Total: 12.54 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 4.66 Total: -8.50 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -3.43 Total: -90.63 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.91 Total: -9.73 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.87 Total: 43.25 kcal Total: -59.03 3.23 -55.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.320 kcal (2) G-P(sol) polarization free energy of solvation -59.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds