Wall clock time and date at job start Tue Mar 31 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 116.99585 * 2 1 4 4 C 1.38632 * 119.62806 * 179.97438 * 3 2 1 5 5 C 1.39137 * 119.05026 * 179.97438 * 4 3 2 6 6 N 1.39342 * 120.84061 * 180.02562 * 5 4 3 7 7 C 1.46508 * 119.99816 * 359.97438 * 6 5 4 8 8 H 1.09000 * 109.40866 * 35.14498 * 7 6 5 9 9 C 1.52957 * 109.41311 * 154.99754 * 7 6 5 10 10 C 1.53221 * 109.40430 * 183.63460 * 9 7 6 11 11 C 1.51269 * 108.53786 * 305.37373 * 10 9 7 12 12 C 1.37874 * 120.85103 * 231.32155 * 11 10 9 13 13 N 1.31517 * 120.00205 * 175.04300 * 12 11 10 14 14 Si 1.86801 * 120.00133 * 355.04298 * 12 11 10 15 15 H 1.48502 * 109.47083 * 59.99980 * 14 12 11 16 16 H 1.48498 * 109.47189 * 299.99970 * 14 12 11 17 17 H 1.48498 * 109.46957 * 179.97438 * 14 12 11 18 18 C 1.51269 * 118.29753 * 51.60196 * 11 10 9 19 19 C 1.52952 * 109.35551 * 275.31993 * 7 6 5 20 20 C 1.39782 * 118.32616 * 0.27883 * 5 4 3 21 21 F 1.35097 * 120.42339 * 179.72814 * 20 5 4 22 22 C 1.37891 * 119.15794 * 359.45073 * 20 5 4 23 23 N 1.32144 * 120.87697 * 0.56089 * 22 20 5 24 24 H 1.08996 * 109.47358 * 60.00542 * 1 2 3 25 25 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47425 * 300.00064 * 1 2 3 27 27 H 1.08006 * 120.47642 * 359.95699 * 4 3 2 28 28 H 0.97001 * 120.00398 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.47914 * 63.65873 * 9 7 6 30 30 H 1.09000 * 109.48338 * 303.61941 * 9 7 6 31 31 H 1.09006 * 109.62948 * 185.66201 * 10 9 7 32 32 H 1.09001 * 109.78664 * 65.18180 * 10 9 7 33 33 H 0.97003 * 119.99436 * 5.41730 * 13 12 11 34 34 H 1.08999 * 109.62717 * 68.11229 * 18 11 10 35 35 H 1.09005 * 109.62264 * 188.68704 * 18 11 10 36 36 H 1.08999 * 109.48659 * 296.30879 * 19 7 6 37 37 H 1.08996 * 109.48678 * 56.34027 * 19 7 6 38 38 H 1.07998 * 119.56411 * 180.29949 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4299 1.2730 0.0005 5 6 4.0490 2.5191 0.0000 6 7 5.4383 2.6266 0.0000 7 6 6.2664 1.4180 0.0011 8 1 5.7777 0.6435 -0.5900 9 6 7.6323 1.7371 -0.6088 10 6 8.4655 0.4539 -0.6910 11 6 8.5279 -0.1680 0.6865 12 6 9.7359 -0.5254 1.2469 13 7 9.7807 -0.9740 2.4824 14 14 11.3090 -0.3724 0.2513 15 1 11.5049 1.0437 -0.1504 16 1 11.2113 -1.2223 -0.9626 17 1 12.4616 -0.8166 1.0756 18 6 7.2305 -0.3937 1.4309 19 6 6.4425 0.9255 1.4384 20 6 3.2421 3.6606 0.0049 21 9 3.7985 4.8916 0.0101 22 6 1.8710 3.5141 -0.0015 23 7 1.3171 2.3144 -0.0010 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0199 0.3684 0.0017 28 1 5.8571 3.5015 0.0000 29 1 8.1482 2.4661 0.0162 30 1 7.4967 2.1473 -1.6096 31 1 9.4733 0.6927 -1.0308 32 1 8.0003 -0.2442 -1.3870 33 1 8.9578 -1.1279 2.9725 34 1 6.6499 -1.1674 0.9284 35 1 7.4445 -0.6996 2.4550 36 1 6.9865 1.6736 2.0150 37 1 5.4637 0.7605 1.8887 38 1 1.2414 4.3916 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:43 Heat of formation + Delta-G solvation = -61.998444 kcal Electronic energy + Delta-G solvation = -21951.909259 eV Core-core repulsion = 18515.404769 eV Total energy + Delta-G solvation = -3436.504490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.69667 -40.50403 -38.42452 -37.32491 -34.91342 -32.27321 -30.58035 -29.95265 -29.61748 -27.22816 -26.67546 -23.72826 -22.53105 -22.09333 -21.10156 -19.74880 -18.45496 -17.77378 -17.36361 -16.57068 -16.12740 -15.45910 -15.39310 -15.38824 -14.59982 -14.33569 -13.85711 -13.78801 -13.50111 -13.23799 -12.98771 -12.51115 -12.43452 -12.17940 -11.89911 -11.73161 -11.29658 -11.13634 -10.94471 -10.68264 -10.41666 -10.24743 -10.17093 -9.69212 -9.63987 -9.33097 -8.63278 -8.44851 -8.35460 -7.64697 -6.50584 -4.10852 1.10059 1.43923 2.98624 3.34634 3.36928 3.49994 3.56642 3.73349 4.17904 4.35546 4.40888 4.94200 5.10433 5.15314 5.19134 5.25162 5.39095 5.49778 5.54383 5.63152 5.68495 5.90449 6.03030 6.23469 6.28206 6.41655 6.52528 6.59897 6.69622 6.78569 6.89546 7.15825 7.22489 7.23230 7.36239 7.46352 7.72546 7.86158 7.95584 8.22637 8.78797 9.52381 10.87037 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.004443 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.331205 B = 6299.922642 C = 7021.711677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.304 6.304 3 C 0.350 3.650 4 C -0.253 4.253 5 C 0.269 3.731 6 N -0.715 5.715 7 C 0.156 3.844 8 H 0.075 0.925 9 C -0.113 4.113 10 C -0.002 4.002 11 C -0.572 4.572 12 C 0.036 3.964 13 N -0.904 5.904 14 Si 1.062 2.938 15 H -0.286 1.286 16 H -0.284 1.284 17 H -0.286 1.286 18 C 0.003 3.997 19 C -0.118 4.118 20 C -0.075 4.075 21 F -0.140 7.140 22 C 0.150 3.850 23 N -0.566 5.566 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.150 0.850 28 H 0.403 0.597 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.030 0.970 32 H 0.015 0.985 33 H 0.272 0.728 34 H 0.009 0.991 35 H 0.039 0.961 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 6.434 -5.599 16.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.211 6.211 3 C 0.172 3.828 4 C -0.279 4.279 5 C 0.151 3.849 6 N -0.339 5.339 7 C 0.053 3.947 8 H 0.093 0.907 9 C -0.152 4.152 10 C -0.041 4.041 11 C -0.591 4.591 12 C -0.169 4.169 13 N -0.540 5.540 14 Si 0.891 3.109 15 H -0.212 1.212 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.035 4.035 19 C -0.157 4.157 20 C -0.103 4.103 21 F -0.119 7.119 22 C -0.006 4.006 23 N -0.293 5.293 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.239 0.761 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.027 0.973 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.157 5.741 -5.488 15.368 hybrid contribution -0.793 1.014 -0.019 1.287 sum -13.950 6.755 -5.508 16.449 Atomic orbital electron populations 1.22832 0.77432 1.02736 1.02370 1.86265 1.22698 1.24469 1.87687 1.19412 0.88592 0.84479 0.90281 1.20348 0.92154 0.97547 1.17871 1.17826 0.85335 0.91847 0.89876 1.45296 1.01179 1.10527 1.76874 1.21172 0.90727 0.84682 0.98120 0.90706 1.21855 0.94451 1.01097 0.97771 1.19501 0.94897 0.92070 0.97587 1.20998 0.93070 1.43721 1.01319 1.25768 1.01390 0.93482 0.96294 1.70830 1.31818 1.42271 1.09087 0.83615 0.75649 0.76608 0.75075 1.21237 1.21078 1.21249 1.19493 0.94635 0.91415 0.97927 1.22097 0.98459 1.00825 0.94285 1.18020 0.92388 0.79454 1.20462 1.91428 1.85641 1.39409 1.95394 1.22063 0.90132 0.94830 0.93602 1.67371 1.39507 0.97738 1.24717 0.92368 0.88810 0.92348 0.83202 0.76122 0.92374 0.94211 0.95119 0.96648 0.91494 0.97309 0.94228 0.92844 0.94681 0.81821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.30 -4.28 10.48 -18.89 -0.20 -4.47 16 3 C 0.35 5.25 7.48 -17.20 -0.13 5.13 16 4 C -0.25 -3.97 8.84 -39.10 -0.35 -4.32 16 5 C 0.27 4.16 6.68 -83.54 -0.56 3.60 16 6 N -0.71 -11.27 5.24 -52.00 -0.27 -11.55 16 7 C 0.16 2.81 2.06 -67.97 -0.14 2.67 16 8 H 0.07 1.38 6.55 -51.93 -0.34 1.04 16 9 C -0.11 -2.14 5.40 -26.64 -0.14 -2.28 16 10 C 0.00 -0.05 5.56 -27.49 -0.15 -0.20 16 11 C -0.57 -14.42 5.50 -98.92 -0.54 -14.96 16 12 C 0.04 0.97 5.46 -17.82 -0.10 0.88 16 13 N -0.90 -26.07 13.66 55.43 0.76 -25.31 16 14 Si 1.06 24.09 27.19 -169.99 -4.62 19.47 16 15 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.00 0.08 5.99 -27.26 -0.16 -0.08 16 19 C -0.12 -2.39 5.49 -26.41 -0.14 -2.54 16 20 C -0.08 -1.07 7.35 -39.13 -0.29 -1.36 16 21 F -0.14 -1.96 16.76 2.25 0.04 -1.92 16 22 C 0.15 1.91 11.15 -17.54 -0.20 1.72 16 23 N -0.57 -7.93 9.21 -13.37 -0.12 -8.05 16 24 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 27 H 0.15 2.45 6.37 -52.48 -0.33 2.12 16 28 H 0.40 5.91 8.19 -40.82 -0.33 5.57 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.03 0.66 5.25 -51.93 -0.27 0.39 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.27 7.79 6.36 -40.82 -0.26 7.53 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.04 1.00 5.80 -51.93 -0.30 0.70 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 38 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -28.05 310.60 -6.44 -34.49 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.84 Total: 2.95 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.85 Total: -10.28 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.36 Total: -44.91 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.20 Total: -4.47 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -4.62 Total: 19.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.05 -6.44 -34.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -28.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds