Wall clock time and date at job start Tue Mar 31 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35727 * 116.99585 * 2 1 4 4 C 1.38632 * 119.62806 * 179.97438 * 3 2 1 5 5 C 1.39137 * 119.05026 * 179.97438 * 4 3 2 6 6 N 1.39342 * 120.84061 * 180.02562 * 5 4 3 7 7 C 1.46508 * 119.99816 * 359.97438 * 6 5 4 8 8 H 1.09000 * 109.40866 * 35.14498 * 7 6 5 9 9 C 1.52957 * 109.41311 * 154.99754 * 7 6 5 10 10 C 1.53221 * 109.40430 * 183.63460 * 9 7 6 11 11 C 1.51269 * 108.53786 * 305.37373 * 10 9 7 12 12 C 1.37874 * 120.85103 * 231.32155 * 11 10 9 13 13 N 1.31517 * 120.00205 * 175.04300 * 12 11 10 14 14 Si 1.86801 * 120.00133 * 355.04298 * 12 11 10 15 15 H 1.48502 * 109.47083 * 59.99980 * 14 12 11 16 16 H 1.48498 * 109.47189 * 299.99970 * 14 12 11 17 17 H 1.48498 * 109.46957 * 179.97438 * 14 12 11 18 18 C 1.51269 * 118.29753 * 51.60196 * 11 10 9 19 19 C 1.52952 * 109.35551 * 275.31993 * 7 6 5 20 20 C 1.39782 * 118.32616 * 0.27883 * 5 4 3 21 21 F 1.35097 * 120.42339 * 179.72814 * 20 5 4 22 22 C 1.37891 * 119.15794 * 359.45073 * 20 5 4 23 23 N 1.32144 * 120.87697 * 0.56089 * 22 20 5 24 24 H 1.08996 * 109.47358 * 60.00542 * 1 2 3 25 25 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47425 * 300.00064 * 1 2 3 27 27 H 1.08006 * 120.47642 * 359.95699 * 4 3 2 28 28 H 0.97001 * 120.00398 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.47914 * 63.65873 * 9 7 6 30 30 H 1.09000 * 109.48338 * 303.61941 * 9 7 6 31 31 H 1.09006 * 109.62948 * 185.66201 * 10 9 7 32 32 H 1.09001 * 109.78664 * 65.18180 * 10 9 7 33 33 H 0.97003 * 119.99436 * 5.41730 * 13 12 11 34 34 H 1.08999 * 109.62717 * 68.11229 * 18 11 10 35 35 H 1.09005 * 109.62264 * 188.68704 * 18 11 10 36 36 H 1.08999 * 109.48659 * 296.30879 * 19 7 6 37 37 H 1.08996 * 109.48678 * 56.34027 * 19 7 6 38 38 H 1.07998 * 119.56411 * 180.29949 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4299 1.2730 0.0005 5 6 4.0490 2.5191 0.0000 6 7 5.4383 2.6266 0.0000 7 6 6.2664 1.4180 0.0011 8 1 5.7777 0.6435 -0.5900 9 6 7.6323 1.7371 -0.6088 10 6 8.4655 0.4539 -0.6910 11 6 8.5279 -0.1680 0.6865 12 6 9.7359 -0.5254 1.2469 13 7 9.7807 -0.9740 2.4824 14 14 11.3090 -0.3724 0.2513 15 1 11.5049 1.0437 -0.1504 16 1 11.2113 -1.2223 -0.9626 17 1 12.4616 -0.8166 1.0756 18 6 7.2305 -0.3937 1.4309 19 6 6.4425 0.9255 1.4384 20 6 3.2421 3.6606 0.0049 21 9 3.7985 4.8916 0.0101 22 6 1.8710 3.5141 -0.0015 23 7 1.3171 2.3144 -0.0010 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 4.0199 0.3684 0.0017 28 1 5.8571 3.5015 0.0000 29 1 8.1482 2.4661 0.0162 30 1 7.4967 2.1473 -1.6096 31 1 9.4733 0.6927 -1.0308 32 1 8.0003 -0.2442 -1.3870 33 1 8.9578 -1.1279 2.9725 34 1 6.6499 -1.1674 0.9284 35 1 7.4445 -0.6996 2.4550 36 1 6.9865 1.6736 2.0150 37 1 5.4637 0.7605 1.8887 38 1 1.2414 4.3916 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:43 Heat of formation + Delta-G solvation = -80.363132 kcal Electronic energy + Delta-G solvation = -21952.705612 eV Core-core repulsion = 18515.404769 eV Total energy + Delta-G solvation = -3437.300843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.78377 -41.61471 -39.75402 -38.58774 -36.43204 -33.99366 -31.75817 -31.60759 -30.98444 -28.48453 -27.92666 -25.04233 -23.83673 -23.71572 -22.67703 -21.34635 -19.62265 -18.96029 -18.55706 -18.30841 -17.17377 -16.91983 -16.49218 -16.44219 -15.86414 -15.71076 -15.58090 -15.10147 -14.78946 -14.48340 -14.31886 -14.19025 -13.81638 -13.52255 -13.38684 -12.95057 -12.73297 -12.60122 -12.38098 -12.08845 -11.95816 -11.95435 -11.90724 -11.38794 -11.11718 -10.76922 -10.57258 -10.28903 -9.54364 -8.89312 -8.58219 -6.17217 0.00626 0.28558 1.52752 1.58570 1.77413 1.92050 2.30005 2.56104 2.61937 3.09167 3.15958 3.32781 3.80536 3.87462 4.05144 4.09034 4.31381 4.36921 4.47257 4.48375 4.57755 4.58968 4.75471 4.80715 4.86289 4.87496 4.92059 4.98500 5.12061 5.16857 5.24526 5.31379 5.46277 5.67220 5.95811 6.02053 6.22092 6.23050 6.51792 6.73985 6.77064 7.53647 8.78878 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.004443 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.331205 B = 6299.922642 C = 7021.711677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.345 3.655 4 C -0.268 4.268 5 C 0.259 3.741 6 N -0.713 5.713 7 C 0.170 3.830 8 H 0.074 0.926 9 C -0.107 4.107 10 C -0.009 4.009 11 C -0.575 4.575 12 C -0.018 4.018 13 N -0.945 5.945 14 Si 1.097 2.903 15 H -0.264 1.264 16 H -0.266 1.266 17 H -0.298 1.298 18 C -0.002 4.002 19 C -0.105 4.105 20 C -0.079 4.079 21 F -0.138 7.138 22 C 0.160 3.840 23 N -0.565 5.565 24 H 0.063 0.937 25 H 0.120 0.880 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.410 0.590 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.021 0.979 33 H 0.258 0.742 34 H 0.006 0.994 35 H 0.012 0.988 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 8.061 -7.422 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.168 3.832 4 C -0.294 4.294 5 C 0.143 3.857 6 N -0.338 5.338 7 C 0.066 3.934 8 H 0.092 0.908 9 C -0.145 4.145 10 C -0.047 4.047 11 C -0.594 4.594 12 C -0.216 4.216 13 N -0.584 5.584 14 Si 0.921 3.079 15 H -0.189 1.189 16 H -0.191 1.191 17 H -0.225 1.225 18 C -0.040 4.040 19 C -0.144 4.144 20 C -0.106 4.106 21 F -0.117 7.117 22 C 0.004 3.996 23 N -0.292 5.292 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.079 0.921 27 H 0.156 0.844 28 H 0.247 0.753 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.024 0.976 35 H 0.031 0.969 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -14.622 7.384 -7.335 17.948 hybrid contribution -0.544 0.479 0.555 0.913 sum -15.166 7.863 -6.780 18.380 Atomic orbital electron populations 1.23109 0.75373 1.04670 1.02682 1.86252 1.24813 1.24236 1.87407 1.19527 0.88549 0.85157 0.90003 1.20335 0.92702 0.97315 1.19078 1.17949 0.85106 0.92367 0.90280 1.44962 1.01255 1.09873 1.77737 1.20799 0.90983 0.85636 0.95963 0.90837 1.21725 0.93985 0.99331 0.99505 1.19557 0.96186 0.93485 0.95469 1.21581 0.93091 1.41975 1.02798 1.27017 1.04834 0.93345 0.96444 1.70938 1.31073 1.45684 1.10697 0.83172 0.72267 0.78086 0.74415 1.18871 1.19120 1.22515 1.19502 0.95082 0.93196 0.96265 1.21893 0.97782 0.98450 0.96263 1.18087 0.92774 0.79082 1.20670 1.91436 1.85699 1.39133 1.95411 1.22651 0.90021 0.95473 0.91418 1.67487 1.39285 0.97867 1.24568 0.91855 0.86209 0.92135 0.84439 0.75300 0.92729 0.91217 0.94383 0.96069 0.93004 0.97570 0.96911 0.94279 0.94097 0.78185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.83 16 2 O -0.32 -8.59 10.48 -90.50 -0.95 -9.53 16 3 C 0.35 9.87 7.48 84.71 0.63 10.50 16 4 C -0.27 -8.17 8.84 22.58 0.20 -7.97 16 5 C 0.26 7.59 6.68 38.54 0.26 7.85 16 6 N -0.71 -21.25 5.24 -318.43 -1.67 -22.91 16 7 C 0.17 5.93 2.06 44.96 0.09 6.02 16 8 H 0.07 2.62 6.55 -2.39 -0.02 2.60 16 9 C -0.11 -3.80 5.40 30.65 0.17 -3.63 16 10 C -0.01 -0.37 5.56 30.10 0.17 -0.20 16 11 C -0.58 -29.13 5.50 -16.17 -0.09 -29.22 16 12 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 13 N -0.95 -56.52 13.66 21.45 0.29 -56.23 16 14 Si 1.10 48.15 27.19 68.60 1.87 50.02 16 15 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 17 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 18 C 0.00 -0.11 5.99 30.25 0.18 0.07 16 19 C -0.10 -4.28 5.49 30.80 0.17 -4.11 16 20 C -0.08 -2.03 7.35 22.56 0.17 -1.87 16 21 F -0.14 -3.48 16.76 44.97 0.75 -2.73 16 22 C 0.16 3.59 11.15 84.56 0.94 4.54 16 23 N -0.56 -14.43 9.21 -309.03 -2.85 -17.27 16 24 H 0.06 1.08 8.10 -2.39 -0.02 1.06 16 25 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 27 H 0.14 4.49 6.37 -2.91 -0.02 4.47 16 28 H 0.41 11.14 8.19 -92.71 -0.76 10.38 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.54 5.25 -2.38 -0.01 1.53 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.26 15.62 6.36 -92.71 -0.59 15.03 16 34 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.01 0.67 5.80 -2.38 -0.01 0.65 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16 38 H 0.20 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -61.10 310.60 2.49 -58.61 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.51 Total: 16.78 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.53 Total: -16.73 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.22 Total: -96.41 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.95 Total: -9.53 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.75 Total: -2.73 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.87 Total: 50.02 kcal Total: -61.10 2.49 -58.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.756 kcal (2) G-P(sol) polarization free energy of solvation -61.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds