Wall clock time and date at job start Tue Mar 31 2020 01:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35620 * 117.00215 * 2 1 4 4 C 1.39149 * 120.50062 * 359.97438 * 3 2 1 5 5 C 1.38315 * 118.62899 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.59163 * 359.97438 * 5 4 3 7 7 N 1.38910 * 119.49342 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99991 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46767 * 180.02562 * 8 7 6 10 10 H 1.08996 * 112.85388 * 45.33298 * 9 8 7 11 11 C 1.53780 * 113.61046 * 176.53069 * 9 8 7 12 12 C 1.53780 * 87.08430 * 139.98035 * 11 9 8 13 13 H 1.08999 * 113.61216 * 219.93710 * 12 11 9 14 14 F 1.39898 * 113.61741 * 89.11150 * 12 11 9 15 15 C 1.53782 * 113.61110 * 274.13279 * 9 8 7 16 16 N 1.31862 * 121.01160 * 0.02562 * 6 5 4 17 17 C 1.33825 * 121.47118 * 359.97438 * 16 6 5 18 18 C 1.40918 * 119.84829 * 179.97438 * 17 16 6 19 19 H 1.07999 * 119.99653 * 173.56558 * 18 17 16 20 20 C 1.40030 * 119.99974 * 353.56834 * 18 17 16 21 21 N 1.30781 * 119.99946 * 6.27240 * 20 18 17 22 22 Si 1.86801 * 119.99852 * 186.27044 * 20 18 17 23 23 H 1.48496 * 109.46736 * 94.98820 * 22 20 18 24 24 H 1.48498 * 109.46972 * 214.98739 * 22 20 18 25 25 H 1.48500 * 109.47138 * 334.98715 * 22 20 18 26 26 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46700 * 300.00173 * 1 2 3 28 28 H 1.08996 * 109.47294 * 59.99812 * 1 2 3 29 29 H 1.07998 * 120.69223 * 359.70645 * 4 3 2 30 30 H 1.07998 * 120.20272 * 179.97438 * 5 4 3 31 31 H 0.97002 * 120.00147 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46932 * 299.99603 * 8 7 6 33 33 H 1.08991 * 109.46890 * 59.99967 * 8 7 6 34 34 H 1.09002 * 113.61284 * 254.52377 * 11 9 8 35 35 H 1.09003 * 113.61946 * 25.34603 * 11 9 8 36 36 H 1.08997 * 113.61455 * 334.57147 * 15 9 8 37 37 H 1.09001 * 113.61306 * 105.47882 * 15 9 8 38 38 H 0.96998 * 119.99994 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2972 2.3820 -0.0005 5 6 1.9651 3.5932 0.0000 6 6 3.3644 3.6107 0.0017 7 7 4.0330 4.8283 0.0017 8 6 3.2736 6.0811 0.0006 9 6 4.2428 7.2650 0.0002 10 1 5.0576 7.1448 -0.7137 11 6 3.5447 8.6325 -0.0862 12 6 4.5801 9.1374 0.9325 13 1 4.1623 9.8067 1.6845 14 9 5.7455 9.6408 0.3446 15 6 4.7110 7.6781 1.4055 16 7 4.0578 2.4892 0.0022 17 6 3.4545 1.2947 0.0017 18 6 4.2292 0.1176 0.0017 19 1 3.7496 -0.8445 0.1061 20 6 5.6208 0.1953 -0.1336 21 7 6.2134 1.3611 -0.1366 22 14 6.6307 -1.3663 -0.3097 23 1 6.8614 -1.6467 -1.7496 24 1 7.9362 -1.1914 0.3760 25 1 5.8972 -2.5021 0.3045 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.2177 2.3480 -0.0057 30 1 1.4101 4.5196 -0.0008 31 1 5.0028 4.8490 0.0024 32 1 2.6466 6.1251 -0.8900 33 1 2.6452 6.1258 0.8900 34 1 3.6291 9.1047 -1.0650 35 1 2.5232 8.6262 0.2940 36 1 4.0095 7.4107 2.1957 37 1 5.7356 7.3810 1.6293 38 1 7.1773 1.4150 -0.2300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168236663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:39 Heat of formation + Delta-G solvation = -27.513217 kcal Electronic energy + Delta-G solvation = -21395.078941 eV Core-core repulsion = 17960.069843 eV Total energy + Delta-G solvation = -3435.009099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -47.75437 -38.92659 -38.37635 -36.73358 -34.40735 -33.00159 -30.26706 -29.26030 -27.03947 -26.24691 -25.95794 -24.87145 -22.79631 -21.36759 -20.30163 -19.57177 -17.41829 -16.87367 -16.43592 -16.09915 -15.68982 -15.20823 -15.02415 -14.70886 -14.60197 -14.45768 -13.93386 -13.21210 -13.16424 -12.72682 -12.61195 -12.51801 -12.20207 -12.05647 -11.56859 -11.27145 -11.18692 -11.12528 -10.92612 -10.56637 -10.46072 -10.41946 -10.33680 -10.13197 -9.76564 -9.39483 -8.40328 -7.97146 -7.63262 -6.35778 -6.23900 -4.32626 2.85190 3.14437 3.16095 3.19599 3.30501 3.99847 4.02571 4.12773 4.30976 4.55668 4.61152 4.65454 4.81421 4.85532 5.42394 5.44335 5.50180 5.62196 5.72553 5.82139 5.82696 5.88903 5.97123 6.00024 6.02431 6.12444 6.14737 6.37793 6.42927 6.74313 6.84615 7.23877 7.34132 7.53167 7.72657 8.25204 8.32139 8.48314 8.73524 8.83467 9.21342 10.21549 10.38624 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.004489 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.175924 B = 6235.352187 C = 7795.301289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.347 4.347 6 C 0.393 3.607 7 N -0.738 5.738 8 C 0.154 3.846 9 C -0.119 4.119 10 H 0.099 0.901 11 C -0.152 4.152 12 C 0.061 3.939 13 H 0.094 0.906 14 F -0.200 7.200 15 C -0.155 4.155 16 N -0.514 5.514 17 C 0.289 3.711 18 C -0.414 4.414 19 H 0.091 0.909 20 C 0.068 3.932 21 N -0.714 5.714 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.260 1.260 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.396 0.604 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 10.189 1.427 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.124 4.124 4 C -0.139 4.139 5 C -0.374 4.374 6 C 0.155 3.845 7 N -0.375 5.375 8 C 0.029 3.971 9 C -0.138 4.138 10 H 0.117 0.883 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.112 0.888 14 F -0.181 7.181 15 C -0.192 4.192 16 N -0.237 5.237 17 C 0.161 3.839 18 C -0.446 4.446 19 H 0.109 0.891 20 C -0.157 4.157 21 N -0.336 5.336 22 Si 0.732 3.268 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.184 1.184 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.230 0.770 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.117 10.256 1.405 10.811 hybrid contribution -0.405 -0.334 -0.176 0.554 sum -3.522 9.922 1.229 10.600 Atomic orbital electron populations 1.22681 0.82250 1.01471 0.99617 1.85920 1.17789 1.27928 1.90918 1.20033 0.93440 0.83088 1.15888 1.20667 0.97227 0.92398 1.03580 1.20341 0.92836 0.96273 1.27923 1.18489 0.87712 0.86734 0.91525 1.44041 1.07835 1.01401 1.84274 1.20995 0.93266 0.82479 1.00398 1.22792 0.99200 0.94070 0.97740 0.88289 1.23530 0.99053 0.96214 1.00242 1.22460 0.83187 0.95800 0.96108 0.88796 1.92803 1.50735 1.88700 1.85829 1.23668 1.03738 0.93817 0.98009 1.68381 1.34793 0.94991 1.25536 1.17771 0.85013 0.91058 0.90069 1.19536 0.90941 0.93268 1.40870 0.89108 1.26079 0.98631 0.97136 0.93836 1.70171 1.10048 1.24641 1.28770 0.86310 0.79041 0.82320 0.79137 1.19562 1.20275 1.18421 0.90206 0.94540 0.94522 0.88331 0.89078 0.76975 0.93052 0.93017 0.90147 0.88121 0.88148 0.90066 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.39 9.62 -18.56 -0.18 -7.57 16 3 C -0.08 -1.98 6.74 -38.11 -0.26 -2.24 16 4 C -0.11 -2.67 9.12 -39.21 -0.36 -3.02 16 5 C -0.35 -8.02 9.33 -38.92 -0.36 -8.39 16 6 C 0.39 9.60 7.65 -155.26 -1.19 8.41 16 7 N -0.74 -14.63 5.72 -60.35 -0.35 -14.98 16 8 C 0.15 2.32 4.70 -4.04 -0.02 2.30 16 9 C -0.12 -1.44 3.73 -89.81 -0.33 -1.78 16 10 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.15 -1.45 7.54 -25.92 -0.20 -1.64 16 12 C 0.06 0.60 5.70 -25.82 -0.15 0.45 16 13 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 14 F -0.20 -2.51 17.38 2.25 0.04 -2.47 16 15 C -0.15 -1.70 7.54 -25.82 -0.19 -1.89 16 16 N -0.51 -14.25 7.91 -10.20 -0.08 -14.33 16 17 C 0.29 8.19 6.55 -84.85 -0.56 7.63 16 18 C -0.41 -11.48 8.92 -37.90 -0.34 -11.82 16 19 H 0.09 2.45 7.33 -52.49 -0.38 2.07 16 20 C 0.07 1.77 5.49 -17.33 -0.10 1.67 16 21 N -0.71 -19.03 11.48 55.55 0.64 -18.39 16 22 Si 0.91 19.08 29.57 -169.99 -5.03 14.05 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.60 7.70 -51.92 -0.40 0.20 16 28 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 29 H 0.10 2.00 6.43 -52.49 -0.34 1.66 16 30 H 0.09 1.86 6.67 -52.49 -0.35 1.51 16 31 H 0.40 7.90 8.59 -40.82 -0.35 7.55 16 32 H 0.05 0.78 7.92 -51.93 -0.41 0.37 16 33 H 0.05 0.76 7.65 -51.93 -0.40 0.36 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.10 1.03 7.92 -51.93 -0.41 0.62 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.27 6.52 8.29 -40.82 -0.34 6.19 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -30.92 320.83 -8.28 -39.20 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.11 Total: 8.35 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.05 Total: -8.69 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.21 Total: -47.71 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.18 Total: -7.57 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.92 -8.28 -39.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168236663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.690 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds