Wall clock time and date at job start Tue Mar 31 2020 01:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35620 * 117.00215 * 2 1 4 4 C 1.39149 * 120.50062 * 359.97438 * 3 2 1 5 5 C 1.38315 * 118.62899 * 179.97438 * 4 3 2 6 6 C 1.39942 * 119.59163 * 359.97438 * 5 4 3 7 7 N 1.38910 * 119.49342 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99991 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46767 * 180.02562 * 8 7 6 10 10 H 1.08996 * 112.85388 * 45.33298 * 9 8 7 11 11 C 1.53780 * 113.61046 * 176.53069 * 9 8 7 12 12 C 1.53780 * 87.08430 * 139.98035 * 11 9 8 13 13 H 1.08999 * 113.61216 * 219.93710 * 12 11 9 14 14 F 1.39898 * 113.61741 * 89.11150 * 12 11 9 15 15 C 1.53782 * 113.61110 * 274.13279 * 9 8 7 16 16 N 1.31862 * 121.01160 * 0.02562 * 6 5 4 17 17 C 1.33825 * 121.47118 * 359.97438 * 16 6 5 18 18 C 1.40918 * 119.84829 * 179.97438 * 17 16 6 19 19 H 1.07999 * 119.99653 * 173.56558 * 18 17 16 20 20 C 1.40030 * 119.99974 * 353.56834 * 18 17 16 21 21 N 1.30781 * 119.99946 * 6.27240 * 20 18 17 22 22 Si 1.86801 * 119.99852 * 186.27044 * 20 18 17 23 23 H 1.48496 * 109.46736 * 94.98820 * 22 20 18 24 24 H 1.48498 * 109.46972 * 214.98739 * 22 20 18 25 25 H 1.48500 * 109.47138 * 334.98715 * 22 20 18 26 26 H 1.08999 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46700 * 300.00173 * 1 2 3 28 28 H 1.08996 * 109.47294 * 59.99812 * 1 2 3 29 29 H 1.07998 * 120.69223 * 359.70645 * 4 3 2 30 30 H 1.07998 * 120.20272 * 179.97438 * 5 4 3 31 31 H 0.97002 * 120.00147 * 180.02562 * 7 6 5 32 32 H 1.09004 * 109.46932 * 299.99603 * 8 7 6 33 33 H 1.08991 * 109.46890 * 59.99967 * 8 7 6 34 34 H 1.09002 * 113.61284 * 254.52377 * 11 9 8 35 35 H 1.09003 * 113.61946 * 25.34603 * 11 9 8 36 36 H 1.08997 * 113.61455 * 334.57147 * 15 9 8 37 37 H 1.09001 * 113.61306 * 105.47882 * 15 9 8 38 38 H 0.96998 * 119.99994 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2972 2.3820 -0.0005 5 6 1.9651 3.5932 0.0000 6 6 3.3644 3.6107 0.0017 7 7 4.0330 4.8283 0.0017 8 6 3.2736 6.0811 0.0006 9 6 4.2428 7.2650 0.0002 10 1 5.0576 7.1448 -0.7137 11 6 3.5447 8.6325 -0.0862 12 6 4.5801 9.1374 0.9325 13 1 4.1623 9.8067 1.6845 14 9 5.7455 9.6408 0.3446 15 6 4.7110 7.6781 1.4055 16 7 4.0578 2.4892 0.0022 17 6 3.4545 1.2947 0.0017 18 6 4.2292 0.1176 0.0017 19 1 3.7496 -0.8445 0.1061 20 6 5.6208 0.1953 -0.1336 21 7 6.2134 1.3611 -0.1366 22 14 6.6307 -1.3663 -0.3097 23 1 6.8614 -1.6467 -1.7496 24 1 7.9362 -1.1914 0.3760 25 1 5.8972 -2.5021 0.3045 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.2177 2.3480 -0.0057 30 1 1.4101 4.5196 -0.0008 31 1 5.0028 4.8490 0.0024 32 1 2.6466 6.1251 -0.8900 33 1 2.6452 6.1258 0.8900 34 1 3.6291 9.1047 -1.0650 35 1 2.5232 8.6262 0.2940 36 1 4.0095 7.4107 2.1957 37 1 5.7356 7.3810 1.6293 38 1 7.1773 1.4150 -0.2300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168236663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:38 Heat of formation + Delta-G solvation = -46.173446 kcal Electronic energy + Delta-G solvation = -21395.888110 eV Core-core repulsion = 17960.069843 eV Total energy + Delta-G solvation = -3435.818267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.63895 -40.64006 -39.50828 -38.39364 -36.10933 -34.75111 -32.15830 -30.93165 -28.38983 -27.89378 -26.87060 -26.52492 -24.03605 -23.09307 -22.04733 -20.49551 -19.31316 -18.38834 -18.11131 -17.25019 -16.79752 -16.67171 -16.36123 -16.21871 -15.99976 -15.79010 -15.29621 -14.85131 -14.61449 -14.21415 -14.05848 -13.66292 -13.54014 -13.34045 -13.24116 -12.90292 -12.85424 -12.48831 -12.24546 -12.07744 -11.91907 -11.87277 -11.56475 -11.28502 -11.20899 -11.04362 -10.09564 -9.87906 -9.55387 -8.25869 -8.04025 -6.31392 1.00498 1.29292 1.41918 1.56238 1.57614 2.26887 2.63027 2.91835 3.05743 3.31301 3.40744 3.66991 3.72890 3.94667 3.98696 4.28577 4.36678 4.47255 4.49109 4.53274 4.64073 4.71448 4.75692 4.76866 4.82408 4.90246 4.95729 5.01095 5.05425 5.08753 5.34042 5.47712 5.53512 5.75628 5.88568 6.28154 6.43995 6.77083 6.86327 7.02739 7.35772 8.31603 8.50044 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016553 B = 0.004489 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.175924 B = 6235.352187 C = 7795.301289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.342 4.342 6 C 0.372 3.628 7 N -0.735 5.735 8 C 0.154 3.846 9 C -0.124 4.124 10 H 0.083 0.917 11 C -0.138 4.138 12 C 0.061 3.939 13 H 0.126 0.874 14 F -0.218 7.218 15 C -0.156 4.156 16 N -0.546 5.546 17 C 0.252 3.748 18 C -0.453 4.453 19 H 0.083 0.917 20 C 0.026 3.974 21 N -0.750 5.750 22 Si 0.985 3.015 23 H -0.265 1.265 24 H -0.266 1.266 25 H -0.258 1.258 26 H 0.110 0.890 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.391 0.609 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 11.221 1.659 12.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.369 4.369 6 C 0.134 3.866 7 N -0.370 5.370 8 C 0.030 3.970 9 C -0.143 4.143 10 H 0.101 0.899 11 C -0.176 4.176 12 C 0.026 3.974 13 H 0.144 0.856 14 F -0.198 7.198 15 C -0.194 4.194 16 N -0.270 5.270 17 C 0.124 3.876 18 C -0.485 4.485 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.373 5.373 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.190 1.190 25 H -0.182 1.182 26 H 0.129 0.871 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.225 0.775 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.495 11.338 1.639 12.307 hybrid contribution -0.138 -0.550 -0.239 0.616 sum -4.633 10.788 1.400 11.824 Atomic orbital electron populations 1.23025 0.79110 1.03986 1.00585 1.85854 1.21060 1.27319 1.91042 1.20079 0.93201 0.84609 1.16808 1.21053 0.98913 0.91630 1.02087 1.20723 0.92544 0.97568 1.26026 1.18949 0.88825 0.87364 0.91467 1.44271 1.07901 1.01617 1.83259 1.21235 0.93711 0.81259 1.00790 1.22769 0.98740 0.94383 0.98378 0.89871 1.23530 0.99913 0.93514 1.00612 1.22631 0.82539 0.95566 0.96702 0.85637 1.92773 1.51993 1.88860 1.86218 1.23702 1.03160 0.94957 0.97563 1.68319 1.36275 0.95856 1.26523 1.18211 0.86822 0.91632 0.90984 1.19729 0.92335 0.93119 1.43364 0.89872 1.26928 0.99086 1.00685 0.92888 1.70250 1.10628 1.26783 1.29620 0.85164 0.77368 0.77714 0.79236 1.18979 1.19014 1.18169 0.87130 0.93387 0.93427 0.84958 0.85973 0.77529 0.92868 0.91959 0.89779 0.85728 0.87013 0.91532 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.05 16 2 O -0.34 -16.11 9.62 -89.32 -0.86 -16.97 16 3 C -0.10 -5.19 6.74 23.23 0.16 -5.03 16 4 C -0.11 -5.11 9.12 22.51 0.21 -4.91 16 5 C -0.34 -15.37 9.33 22.70 0.21 -15.16 16 6 C 0.37 18.33 7.65 133.45 1.02 19.35 16 7 N -0.73 -29.20 5.72 -344.84 -1.97 -31.17 16 8 C 0.15 4.38 4.70 86.38 0.41 4.79 16 9 C -0.12 -2.83 3.73 -10.27 -0.04 -2.87 16 10 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 11 C -0.14 -2.22 7.54 31.12 0.23 -1.99 16 12 C 0.06 1.06 5.70 31.18 0.18 1.24 16 13 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 14 F -0.22 -5.15 17.38 44.97 0.78 -4.37 16 15 C -0.16 -3.20 7.54 31.18 0.24 -2.96 16 16 N -0.55 -31.28 7.91 -186.17 -1.47 -32.75 16 17 C 0.25 14.80 6.55 40.23 0.26 15.06 16 18 C -0.45 -26.23 8.92 23.36 0.21 -26.02 16 19 H 0.08 4.72 7.33 -2.91 -0.02 4.70 16 20 C 0.03 1.37 5.49 85.28 0.47 1.83 16 21 N -0.75 -41.40 11.48 21.84 0.25 -41.15 16 22 Si 0.98 40.11 29.57 68.60 2.03 42.14 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 27 H 0.05 1.46 7.70 -2.38 -0.02 1.45 16 28 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 29 H 0.13 4.98 6.43 -2.91 -0.02 4.96 16 30 H 0.12 4.62 6.67 -2.91 -0.02 4.60 16 31 H 0.39 16.07 8.59 -92.71 -0.80 15.27 16 32 H 0.05 1.51 7.92 -2.39 -0.02 1.49 16 33 H 0.06 1.67 7.65 -2.39 -0.02 1.65 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.46 8.10 -2.39 -0.02 1.44 16 36 H 0.11 2.04 7.92 -2.39 -0.02 2.02 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -70.04 320.83 3.71 -66.34 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.29 Total: 32.55 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.66 Total: -14.60 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.20 Total: -105.08 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.86 Total: -16.97 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.78 Total: -4.37 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -70.04 3.71 -66.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168236663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.162 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds