Wall clock time and date at job start Tue Mar 31 2020 02:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46708 * 299.72635 * 9 7 2 11 11 C 1.52992 * 109.47451 * 299.99708 * 10 9 7 12 12 C 1.52998 * 109.47302 * 300.00160 * 11 10 9 13 13 N 1.46905 * 109.47646 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99671 * 84.99973 * 13 12 11 15 15 C 1.53004 * 109.46955 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.53964 * 52.15648 * 15 14 13 17 17 C 1.54221 * 110.60616 * 175.00022 * 15 14 13 18 18 C 1.51317 * 103.55740 * 118.51971 * 17 15 14 19 19 O 1.21225 * 125.39777 * 179.97438 * 18 17 15 20 20 N 1.33882 * 109.20344 * 359.97438 * 18 17 15 21 21 C 1.33876 * 114.47334 * 0.02562 * 20 18 17 22 22 O 1.21226 * 125.39132 * 180.02562 * 21 20 18 23 23 C 1.53006 * 109.47141 * 60.00000 * 12 11 10 24 24 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 25 25 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09005 * 109.47120 * 60.00102 * 10 9 7 28 28 H 1.09002 * 109.46792 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47344 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46985 * 60.00287 * 11 10 9 31 31 H 1.09002 * 109.47204 * 299.99992 * 12 11 10 32 32 H 1.00892 * 111.00222 * 208.95757 * 13 12 11 33 33 H 1.09005 * 109.47291 * 299.99820 * 14 13 12 34 34 H 1.09001 * 109.47302 * 60.00263 * 14 13 12 35 35 H 1.09000 * 110.60920 * 237.03937 * 17 15 14 36 36 H 1.09003 * 110.60737 * 359.84469 * 17 15 14 37 37 H 0.96991 * 122.76138 * 179.97438 * 20 18 17 38 38 H 1.08995 * 109.47637 * 180.02562 * 23 12 11 39 39 H 1.09002 * 109.47078 * 59.99915 * 23 12 11 40 40 H 1.09002 * 109.47200 * 179.97438 * 24 9 7 41 41 H 1.09000 * 109.46986 * 300.00089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0220 -0.4789 -1.2515 11 6 3.5126 -1.2064 -2.4973 12 6 4.0226 -2.6488 -2.4900 13 7 3.5330 -3.3476 -3.6858 14 6 4.4167 -3.1076 -4.8345 15 6 3.8751 -3.8491 -6.0583 16 1 2.8260 -3.6023 -6.2217 17 6 4.7124 -3.5154 -7.3097 18 6 5.2781 -4.8558 -7.7258 19 8 6.0030 -5.0469 -8.6784 20 7 4.8509 -5.7973 -6.8751 21 6 4.0559 -5.3429 -5.8985 22 8 3.5600 -6.0207 -5.0243 23 6 3.5122 -3.3639 -1.2373 24 6 4.0217 -2.6364 0.0086 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6756 0.8886 27 1 3.6586 0.5488 -1.2568 28 1 5.1120 -0.4785 -1.2509 29 1 3.8766 -0.6972 -3.3897 30 1 2.4226 -1.2064 -2.4977 31 1 5.1127 -2.6488 -2.4895 32 1 3.4287 -4.3356 -3.5100 33 1 4.4560 -2.0389 -5.0457 34 1 5.4187 -3.4695 -4.6039 35 1 4.0796 -3.1052 -8.0966 36 1 5.5132 -2.8190 -7.0609 37 1 5.0967 -6.7317 -6.9598 38 1 3.8759 -4.3914 -1.2318 39 1 2.4222 -3.3640 -1.2377 40 1 5.1117 -2.6363 0.0085 41 1 3.6580 -3.1457 0.9010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:20 Heat of formation + Delta-G solvation = -78.803467 kcal Electronic energy + Delta-G solvation = -22400.610988 eV Core-core repulsion = 19086.838083 eV Total energy + Delta-G solvation = -3313.772906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12666 -39.01536 -38.35942 -36.31124 -35.34516 -32.90246 -31.74566 -29.99221 -28.97439 -26.59382 -24.73643 -23.74993 -22.27154 -21.83610 -20.71572 -20.48772 -18.65999 -18.21881 -17.20402 -16.45333 -16.16138 -15.63896 -15.24341 -15.09115 -14.57499 -14.38411 -14.22617 -14.09411 -13.50730 -13.32687 -13.15701 -12.66407 -12.39355 -12.34921 -11.88566 -11.49415 -11.33732 -11.25497 -10.92612 -10.83586 -10.67862 -10.42541 -10.32327 -10.21676 -9.93000 -9.71631 -9.29418 -9.00300 -8.74594 -8.46647 -8.14339 -5.99065 -3.95676 1.14012 2.36416 2.42912 3.30638 3.41561 3.43369 3.73387 3.80363 3.92800 4.37413 4.47421 4.68639 4.92757 5.10784 5.22079 5.31924 5.41090 5.53241 5.58775 5.62708 5.65738 5.86475 6.11319 6.18622 6.24919 6.31085 6.38142 6.40414 6.45093 6.69855 6.71304 6.89949 7.00858 7.12380 7.24762 7.30907 7.46674 7.52123 7.53035 7.70514 7.88166 8.61642 9.05767 9.64333 11.14195 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.003885 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.744131 B = 7204.559881 C = 7466.566005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.268 1.268 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.007 3.993 10 C -0.118 4.118 11 C -0.091 4.091 12 C 0.099 3.901 13 N -0.686 5.686 14 C 0.076 3.924 15 C -0.125 4.125 16 H 0.139 0.861 17 C -0.154 4.154 18 C 0.532 3.468 19 O -0.489 6.489 20 N -0.683 5.683 21 C 0.529 3.471 22 O -0.469 6.469 23 C -0.111 4.111 24 C -0.093 4.093 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.348 0.652 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.414 0.586 38 H 0.038 0.962 39 H 0.087 0.913 40 H 0.033 0.967 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -7.151 -13.737 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.537 4.537 8 H 0.094 0.906 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.129 4.129 12 C -0.009 4.009 13 N -0.319 5.319 14 C -0.054 4.054 15 C -0.146 4.146 16 H 0.156 0.844 17 C -0.194 4.194 18 C 0.320 3.680 19 O -0.360 6.360 20 N -0.349 5.349 21 C 0.316 3.684 22 O -0.338 6.338 23 C -0.149 4.149 24 C -0.132 4.132 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.168 0.832 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.130 -6.850 -13.911 18.521 hybrid contribution 1.286 -0.047 0.072 1.289 sum 11.416 -6.897 -13.839 19.220 Atomic orbital electron populations 1.69900 1.06203 1.26644 1.51453 1.24984 0.94578 0.98761 0.94842 0.86909 0.79848 0.84067 0.77726 1.20703 1.22826 1.19362 1.21000 0.88612 0.94273 1.49804 0.90631 1.19208 0.97248 0.91810 0.92912 1.21846 0.97107 0.98867 0.97730 1.21358 1.03622 0.92403 0.95554 1.21492 0.95487 0.95507 0.88455 1.60514 1.49622 1.16856 1.04896 1.21869 0.93696 1.00579 0.89286 1.22238 1.04670 0.91294 0.96444 0.84376 1.22570 1.02161 0.95823 0.98870 1.20854 0.78495 0.87936 0.80733 1.90816 1.33990 1.84690 1.26549 1.44830 1.47231 1.13764 1.29065 1.20954 0.76245 0.91484 0.79705 1.90823 1.46325 1.64034 1.32651 1.21620 1.03415 0.96067 0.93771 1.21327 0.97246 0.97886 0.96694 0.92889 0.95762 0.93665 0.95010 0.94687 0.89181 0.95277 0.83179 0.88931 0.95266 0.85662 0.85805 0.74718 0.94370 0.89477 0.94777 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 3 Si 0.88 21.74 24.38 -169.99 -4.14 17.59 16 4 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.27 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.50 -13.39 7.19 -34.44 -0.25 -13.64 16 8 H 0.08 2.21 6.96 -52.49 -0.37 1.84 16 9 C 0.01 0.16 2.18 -91.77 -0.20 -0.04 16 10 C -0.12 -2.45 4.95 -26.74 -0.13 -2.58 16 11 C -0.09 -1.75 5.21 -26.74 -0.14 -1.89 16 12 C 0.10 1.65 2.49 -67.71 -0.17 1.48 16 13 N -0.69 -9.87 6.31 -106.72 -0.67 -10.55 16 14 C 0.08 0.79 4.78 -3.82 -0.02 0.77 16 15 C -0.12 -1.01 3.32 -90.83 -0.30 -1.31 16 16 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.15 -0.89 6.67 -26.94 -0.18 -1.07 16 18 C 0.53 4.37 8.55 -11.08 -0.09 4.27 16 19 O -0.49 -5.62 18.02 5.60 0.10 -5.52 16 20 N -0.68 -5.33 5.48 -11.39 -0.06 -5.40 16 21 C 0.53 5.13 7.77 -11.09 -0.09 5.05 16 22 O -0.47 -6.19 16.38 5.60 0.09 -6.10 16 23 C -0.11 -2.02 4.97 -26.72 -0.13 -2.15 16 24 C -0.09 -1.81 5.41 -26.73 -0.14 -1.95 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.57 7.18 -51.93 -0.37 0.20 16 27 H 0.05 1.01 3.31 -51.93 -0.17 0.84 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.59 7.45 -51.93 -0.39 0.20 16 30 H 0.09 2.04 7.22 -51.93 -0.37 1.67 16 31 H 0.03 0.46 7.80 -51.93 -0.41 0.06 16 32 H 0.35 5.14 6.50 -39.30 -0.26 4.89 16 33 H 0.09 0.91 7.44 -51.93 -0.39 0.53 16 34 H 0.03 0.29 8.03 -51.93 -0.42 -0.12 16 35 H 0.13 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.12 0.57 7.74 -51.93 -0.40 0.17 16 37 H 0.41 2.68 8.96 -40.82 -0.37 2.32 16 38 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 39 H 0.09 1.83 6.62 -51.93 -0.34 1.49 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -32.12 316.31 -7.05 -39.17 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.96 Total: 3.70 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.94 Total: -11.20 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.04 Total: -42.40 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.19 Total: -11.62 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.12 -7.05 -39.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.629 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds