Wall clock time and date at job start Tue Mar 31 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46708 * 299.72635 * 9 7 2 11 11 C 1.52992 * 109.47451 * 299.99708 * 10 9 7 12 12 C 1.52998 * 109.47302 * 300.00160 * 11 10 9 13 13 N 1.46905 * 109.47646 * 179.97438 * 12 11 10 14 14 C 1.46897 * 110.99671 * 84.99973 * 13 12 11 15 15 C 1.53004 * 109.46955 * 180.02562 * 14 13 12 16 16 H 1.09007 * 110.53964 * 52.15648 * 15 14 13 17 17 C 1.54221 * 110.60616 * 175.00022 * 15 14 13 18 18 C 1.51317 * 103.55740 * 118.51971 * 17 15 14 19 19 O 1.21225 * 125.39777 * 179.97438 * 18 17 15 20 20 N 1.33882 * 109.20344 * 359.97438 * 18 17 15 21 21 C 1.33876 * 114.47334 * 0.02562 * 20 18 17 22 22 O 1.21226 * 125.39132 * 180.02562 * 21 20 18 23 23 C 1.53006 * 109.47141 * 60.00000 * 12 11 10 24 24 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 25 25 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 27 27 H 1.09005 * 109.47120 * 60.00102 * 10 9 7 28 28 H 1.09002 * 109.46792 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47344 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46985 * 60.00287 * 11 10 9 31 31 H 1.09002 * 109.47204 * 299.99992 * 12 11 10 32 32 H 1.00892 * 111.00222 * 208.95757 * 13 12 11 33 33 H 1.09005 * 109.47291 * 299.99820 * 14 13 12 34 34 H 1.09001 * 109.47302 * 60.00263 * 14 13 12 35 35 H 1.09000 * 110.60920 * 237.03937 * 17 15 14 36 36 H 1.09003 * 110.60737 * 359.84469 * 17 15 14 37 37 H 0.96991 * 122.76138 * 179.97438 * 20 18 17 38 38 H 1.08995 * 109.47637 * 180.02562 * 23 12 11 39 39 H 1.09002 * 109.47078 * 59.99915 * 23 12 11 40 40 H 1.09002 * 109.47200 * 179.97438 * 24 9 7 41 41 H 1.09000 * 109.46986 * 300.00089 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0220 -0.4789 -1.2515 11 6 3.5126 -1.2064 -2.4973 12 6 4.0226 -2.6488 -2.4900 13 7 3.5330 -3.3476 -3.6858 14 6 4.4167 -3.1076 -4.8345 15 6 3.8751 -3.8491 -6.0583 16 1 2.8260 -3.6023 -6.2217 17 6 4.7124 -3.5154 -7.3097 18 6 5.2781 -4.8558 -7.7258 19 8 6.0030 -5.0469 -8.6784 20 7 4.8509 -5.7973 -6.8751 21 6 4.0559 -5.3429 -5.8985 22 8 3.5600 -6.0207 -5.0243 23 6 3.5122 -3.3639 -1.2373 24 6 4.0217 -2.6364 0.0086 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6756 0.8886 27 1 3.6586 0.5488 -1.2568 28 1 5.1120 -0.4785 -1.2509 29 1 3.8766 -0.6972 -3.3897 30 1 2.4226 -1.2064 -2.4977 31 1 5.1127 -2.6488 -2.4895 32 1 3.4287 -4.3356 -3.5100 33 1 4.4560 -2.0389 -5.0457 34 1 5.4187 -3.4695 -4.6039 35 1 4.0796 -3.1052 -8.0966 36 1 5.5132 -2.8190 -7.0609 37 1 5.0967 -6.7317 -6.9598 38 1 3.8759 -4.3914 -1.2318 39 1 2.4222 -3.3640 -1.2377 40 1 5.1117 -2.6363 0.0085 41 1 3.6580 -3.1457 0.9010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:19 Heat of formation + Delta-G solvation = -104.239757 kcal Electronic energy + Delta-G solvation = -22401.713989 eV Core-core repulsion = 19086.838083 eV Total energy + Delta-G solvation = -3314.875906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.83010 -40.00208 -39.64016 -37.18145 -36.45037 -34.37614 -33.22142 -31.54370 -30.27962 -27.61782 -26.28993 -24.90398 -23.50622 -22.74353 -21.99519 -21.39888 -20.41097 -18.95811 -18.11036 -17.94450 -17.22069 -16.86883 -16.47335 -16.03856 -15.91991 -15.62958 -15.25738 -15.08292 -15.01642 -14.46873 -14.38224 -13.96399 -13.83815 -13.61088 -13.13009 -12.93900 -12.69291 -12.56863 -12.26807 -12.03965 -11.88720 -11.70427 -11.67287 -11.54218 -11.44308 -11.06284 -10.91282 -10.73882 -10.63157 -10.46475 -9.24718 -8.17051 -6.16598 0.42357 1.35141 1.40781 1.50380 1.68639 1.77836 2.41448 3.00423 3.16649 3.19795 3.24209 3.67684 3.84030 4.02521 4.09426 4.27099 4.41136 4.56329 4.61816 4.67702 4.72137 4.77559 4.80661 4.86830 4.89415 4.91942 4.94211 5.02973 5.12442 5.20718 5.45240 5.51823 5.58167 5.64559 5.69374 5.79936 5.92633 6.19716 6.27462 6.46493 6.54773 6.82127 6.88854 7.46477 9.00088 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.029475 B = 0.003885 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.744131 B = 7204.559881 C = 7466.566005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.009 3.991 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.308 1.308 6 H -0.249 1.249 7 C -0.489 4.489 8 H 0.033 0.967 9 C 0.001 3.999 10 C -0.118 4.118 11 C -0.087 4.087 12 C 0.108 3.892 13 N -0.700 5.700 14 C 0.073 3.927 15 C -0.117 4.117 16 H 0.142 0.858 17 C -0.139 4.139 18 C 0.536 3.464 19 O -0.522 6.522 20 N -0.677 5.677 21 C 0.531 3.469 22 O -0.509 6.509 23 C -0.108 4.108 24 C -0.092 4.092 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.345 0.655 33 H 0.106 0.894 34 H 0.041 0.959 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.418 0.582 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -6.237 -15.303 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.237 1.237 6 H -0.173 1.173 7 C -0.527 4.527 8 H 0.051 0.949 9 C -0.017 4.017 10 C -0.156 4.156 11 C -0.125 4.125 12 C -0.001 4.001 13 N -0.333 5.333 14 C -0.057 4.057 15 C -0.139 4.139 16 H 0.160 0.840 17 C -0.178 4.178 18 C 0.326 3.674 19 O -0.396 6.396 20 N -0.341 5.341 21 C 0.320 3.680 22 O -0.382 6.382 23 C -0.146 4.146 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.165 0.835 33 H 0.124 0.876 34 H 0.059 0.941 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.258 0.742 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.222 -5.950 -15.495 21.221 hybrid contribution 0.296 -0.465 0.564 0.788 sum 13.518 -6.415 -14.931 21.138 Atomic orbital electron populations 1.70067 1.08208 1.27422 1.54099 1.25792 0.95210 1.02620 0.95001 0.85909 0.79038 0.79306 0.78463 1.19262 1.23670 1.17271 1.21248 0.91239 0.92450 1.47771 0.94871 1.19236 0.94069 0.94453 0.93980 1.21806 0.99246 0.97654 0.96913 1.21261 1.00690 0.94462 0.96101 1.21293 0.96478 0.93807 0.88481 1.60423 1.51209 1.16466 1.05228 1.22015 0.93559 1.01737 0.88362 1.22183 1.05378 0.89623 0.96667 0.83988 1.22628 1.02550 0.94561 0.98072 1.21235 0.77555 0.88726 0.79854 1.90815 1.35605 1.85231 1.27950 1.44803 1.46519 1.14291 1.28532 1.21230 0.75525 0.92152 0.79099 1.90811 1.47942 1.65086 1.34312 1.21535 1.00807 0.97574 0.94655 1.21296 0.99152 0.95644 0.96867 0.93102 0.96313 0.95153 0.91353 0.91900 0.93853 0.92805 0.83516 0.87597 0.94090 0.83056 0.83660 0.74241 0.92306 0.93681 0.91365 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.16 13.96 21.45 0.30 -59.86 16 2 C 0.01 0.54 5.45 84.65 0.46 1.00 16 3 Si 0.94 44.86 24.38 68.60 1.67 46.53 16 4 H -0.27 -11.97 6.87 99.48 0.68 -11.29 16 5 H -0.31 -14.90 7.11 99.48 0.71 -14.20 16 6 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 7 C -0.49 -27.08 7.19 25.60 0.18 -26.89 16 8 H 0.03 2.07 6.96 -2.91 -0.02 2.04 16 9 C 0.00 0.06 2.18 -11.54 -0.03 0.04 16 10 C -0.12 -4.58 4.95 30.59 0.15 -4.43 16 11 C -0.09 -3.14 5.21 30.59 0.16 -2.98 16 12 C 0.11 3.33 2.49 44.92 0.11 3.45 16 13 N -0.70 -18.81 6.31 -491.54 -3.10 -21.91 16 14 C 0.07 1.25 4.78 86.30 0.41 1.67 16 15 C -0.12 -1.54 3.32 -10.93 -0.04 -1.58 16 16 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 17 C -0.14 -1.04 6.67 30.46 0.20 -0.84 16 18 C 0.54 7.43 8.55 87.99 0.75 8.18 16 19 O -0.52 -10.99 18.02 -2.86 -0.05 -11.04 16 20 N -0.68 -9.36 5.48 -427.79 -2.34 -11.70 16 21 C 0.53 9.41 7.77 87.99 0.68 10.10 16 22 O -0.51 -13.16 16.38 -2.86 -0.05 -13.21 16 23 C -0.11 -3.85 4.97 30.60 0.15 -3.70 16 24 C -0.09 -3.40 5.41 30.60 0.17 -3.24 16 25 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 26 H 0.02 0.85 7.18 -2.39 -0.02 0.84 16 27 H 0.03 1.26 3.31 -2.38 -0.01 1.26 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 1.90 7.45 -2.39 -0.02 1.88 16 30 H 0.04 1.97 7.22 -2.39 -0.02 1.95 16 31 H 0.05 1.43 7.80 -2.39 -0.02 1.41 16 32 H 0.34 9.81 6.50 -89.70 -0.58 9.23 16 33 H 0.11 1.59 7.44 -2.38 -0.02 1.57 16 34 H 0.04 0.64 8.03 -2.39 -0.02 0.62 16 35 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.15 0.60 7.74 -2.39 -0.02 0.58 16 37 H 0.42 4.95 8.96 -92.72 -0.83 4.12 16 38 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 39 H 0.04 1.98 6.62 -2.39 -0.02 1.96 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -73.31 316.31 -0.63 -73.94 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.43 Total: 16.47 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 3.38 Total: -19.23 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -5.14 Total: -93.47 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.10 Total: -24.24 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.53 kcal Total: -73.31 -0.63 -73.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.303 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds