Wall clock time and date at job start Tue Mar 31 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46814 * 238.40723 * 3 2 1 5 5 N 1.46503 * 109.46778 * 180.02562 * 4 3 2 6 6 C 1.46501 * 120.00093 * 94.76430 * 5 4 3 7 7 C 1.50707 * 109.46591 * 264.03111 * 6 5 4 8 8 H 1.08002 * 119.99700 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99781 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00368 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99896 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47143 * 60.00240 * 11 9 7 13 13 H 1.48499 * 109.47326 * 300.00408 * 11 9 7 14 14 H 1.48497 * 109.47174 * 180.02562 * 11 9 7 15 15 C 1.34773 * 120.00014 * 274.75446 * 5 4 3 16 16 O 1.21280 * 119.99938 * 3.95367 * 15 5 4 17 17 C 1.50699 * 120.00098 * 183.95335 * 15 5 4 18 18 H 1.08992 * 109.47440 * 26.62315 * 17 15 5 19 19 C 1.53009 * 109.46924 * 266.62799 * 17 15 5 20 20 C 1.53001 * 109.47150 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.46978 * 60.00073 * 20 19 17 22 22 C 1.53000 * 109.47036 * 299.99848 * 21 20 19 23 23 C 1.52996 * 109.47184 * 146.63258 * 17 15 5 24 24 H 1.08999 * 109.47136 * 299.99733 * 23 17 15 25 25 O 1.42901 * 109.47877 * 59.99539 * 23 17 15 26 26 H 1.09000 * 109.47098 * 118.40568 * 3 2 1 27 27 H 1.08996 * 109.47276 * 358.40523 * 3 2 1 28 28 H 1.09000 * 109.47415 * 60.00039 * 4 3 2 29 29 H 1.09006 * 109.46949 * 299.99851 * 4 3 2 30 30 H 1.08995 * 109.47186 * 144.03667 * 6 5 4 31 31 H 1.09000 * 109.47698 * 24.02903 * 6 5 4 32 32 H 0.97002 * 119.99711 * 359.97438 * 10 9 7 33 33 H 1.09006 * 109.46654 * 300.00092 * 19 17 15 34 34 H 1.08997 * 109.47111 * 59.99742 * 19 17 15 35 35 H 1.08990 * 109.47041 * 180.02562 * 20 19 17 36 36 H 1.09000 * 109.46672 * 299.99852 * 20 19 17 37 37 H 1.08992 * 109.47332 * 60.00159 * 21 20 19 38 38 H 1.08999 * 109.46576 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47454 * 180.02562 * 22 21 20 40 40 H 1.09006 * 109.47300 * 300.00220 * 22 21 20 41 41 H 0.96694 * 114.00647 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.7566 1.2287 5 7 4.5826 0.7577 1.2284 6 6 5.3141 1.8906 0.6558 7 6 5.6931 1.5755 -0.7684 8 1 5.4164 0.6265 -1.2035 9 6 6.3922 2.4991 -1.5162 10 7 6.7288 3.6549 -0.9865 11 14 6.8614 2.1088 -3.2817 12 1 5.6323 1.8598 -4.0770 13 1 7.7224 0.8992 -3.3093 14 1 7.6030 3.2570 -3.8622 15 6 5.2574 -0.2832 1.7550 16 8 4.6541 -1.2525 2.1640 17 6 6.7617 -0.2428 1.8357 18 1 7.0952 0.7936 1.8861 19 6 7.3571 -0.9102 0.5942 20 6 8.8844 -0.8698 0.6763 21 6 9.3477 -1.6168 1.9286 22 6 8.7523 -0.9494 3.1700 23 6 7.2255 -0.9895 3.0879 24 1 6.8014 -0.5141 3.9724 25 8 6.7884 -2.3484 3.0218 26 1 2.9711 0.4897 -0.9039 27 1 2.9718 -1.0264 0.0286 28 1 2.7545 0.2675 2.1326 29 1 2.7538 1.7837 1.2001 30 1 6.2161 2.0732 1.2398 31 1 4.6823 2.7786 0.6756 32 1 6.4848 3.8577 -0.0698 33 1 7.0236 -1.9468 0.5437 34 1 7.0266 -0.3784 -0.2980 35 1 9.3085 -1.3447 -0.2082 36 1 9.2181 0.1666 0.7271 37 1 9.0139 -2.6531 1.8779 38 1 10.4357 -1.5875 1.9873 39 1 9.0827 -1.4812 4.0623 40 1 9.0862 0.0871 3.2208 41 1 7.0480 -2.8827 3.7847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181078780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:20 Heat of formation + Delta-G solvation = -81.472064 kcal Electronic energy + Delta-G solvation = -23225.945551 eV Core-core repulsion = 19912.056926 eV Total energy + Delta-G solvation = -3313.888625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97379 -37.99411 -36.49121 -35.27362 -34.62418 -33.10419 -31.54654 -30.16050 -29.44550 -26.79564 -24.50235 -23.13723 -22.48421 -22.03064 -19.69035 -18.44253 -17.51869 -16.93192 -16.53858 -16.24919 -15.68950 -15.02451 -14.50286 -14.31303 -14.23915 -13.88118 -13.60838 -13.29255 -13.09226 -12.71327 -12.45174 -12.43519 -12.14437 -12.04258 -11.94168 -11.65745 -11.41819 -11.39486 -11.10394 -10.86750 -10.78483 -10.58195 -10.42880 -10.23604 -10.19387 -9.72533 -9.52371 -9.29894 -8.83146 -8.54580 -7.82107 -6.56397 -4.32850 2.92520 3.03845 3.32736 3.33576 3.37418 3.52029 3.68504 4.36077 4.44409 4.57228 4.92164 4.97885 5.12108 5.15561 5.26006 5.43646 5.47008 5.56296 5.57839 5.68114 5.77056 5.81078 5.82175 5.95800 6.09001 6.14474 6.21819 6.27464 6.39490 6.41183 6.46940 6.52653 6.76107 6.85864 6.97765 7.30290 7.77738 7.79573 7.97979 8.05371 8.32486 8.59149 8.94870 9.37133 10.79169 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.008515 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.915906 B = 3287.462674 C = 5217.312549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.047 4.047 4 C 0.134 3.866 5 N -0.599 5.599 6 C 0.226 3.774 7 C -0.613 4.613 8 H 0.059 0.941 9 C 0.028 3.972 10 N -0.903 5.903 11 Si 1.060 2.940 12 H -0.287 1.287 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.523 3.477 16 O -0.545 6.545 17 C -0.088 4.088 18 H 0.103 0.897 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.122 3.878 24 H 0.045 0.955 25 O -0.536 6.536 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.269 0.731 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.007 -6.414 6.124 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.095 4.095 3 C -0.088 4.088 4 C 0.008 3.992 5 N -0.330 5.330 6 C 0.106 3.894 7 C -0.651 4.651 8 H 0.078 0.922 9 C -0.178 4.178 10 N -0.538 5.538 11 Si 0.888 3.112 12 H -0.213 1.213 13 H -0.211 1.211 14 H -0.208 1.208 15 C 0.311 3.689 16 O -0.422 6.422 17 C -0.109 4.109 18 H 0.120 0.880 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.188 4.188 23 C 0.062 3.938 24 H 0.063 0.937 25 O -0.339 6.339 26 H 0.140 0.860 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.515 -6.073 4.430 8.298 hybrid contribution -0.011 -0.568 1.764 1.853 sum 3.504 -6.640 6.194 9.733 Atomic orbital electron populations 1.81147 1.13140 1.09790 1.09466 1.29303 0.95275 0.92368 0.92509 1.19843 0.80728 1.05009 1.03259 1.21042 0.81697 1.00242 0.96176 1.48103 1.04881 1.21420 1.58644 1.19583 0.91616 0.83815 0.94387 1.22259 1.40539 1.04996 0.97319 0.92234 1.25700 0.93804 0.93033 1.05232 1.70837 1.43921 1.22524 1.16512 0.83643 0.76753 0.76000 0.74806 1.21299 1.21070 1.20751 1.20413 0.89733 0.81900 0.76822 1.90646 1.70103 1.32263 1.49220 1.21286 0.92525 1.00985 0.96125 0.87961 1.21471 0.94309 1.01020 0.97608 1.21485 0.96176 1.00539 0.97046 1.21453 0.98960 1.00129 0.94598 1.22243 0.96389 1.01738 0.98451 1.21516 0.92022 0.83767 0.96481 0.93659 1.86768 1.79819 1.20815 1.46530 0.86032 0.87258 0.90686 0.90247 0.95407 0.95509 0.92091 0.91755 0.88522 0.92093 0.91824 0.91578 0.92722 0.92108 0.91151 0.79364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.15 18.54 42.15 0.78 -7.37 16 2 C 0.22 3.55 15.43 -20.76 -0.32 3.23 16 3 C -0.05 -0.72 6.00 -29.52 -0.18 -0.89 16 4 C 0.13 2.17 5.33 -4.04 -0.02 2.14 16 5 N -0.60 -11.08 2.48 -175.06 -0.43 -11.51 16 6 C 0.23 4.65 4.31 -5.19 -0.02 4.63 16 7 C -0.61 -13.92 7.51 -34.44 -0.26 -14.18 16 8 H 0.06 1.37 7.34 -52.49 -0.39 0.99 16 9 C 0.03 0.69 5.46 -17.82 -0.10 0.59 16 10 N -0.90 -23.61 13.65 55.43 0.76 -22.86 16 11 Si 1.06 22.28 29.90 -169.99 -5.08 17.20 16 12 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16 13 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C 0.52 9.98 6.60 -10.99 -0.07 9.90 16 16 O -0.54 -11.46 14.86 -15.58 -0.23 -11.69 16 17 C -0.09 -1.51 1.80 -91.77 -0.16 -1.67 16 18 H 0.10 1.80 5.86 -51.93 -0.30 1.50 16 19 C -0.11 -1.83 5.04 -26.73 -0.13 -1.97 16 20 C -0.11 -1.69 5.92 -26.73 -0.16 -1.84 16 21 C -0.11 -1.42 5.78 -26.73 -0.15 -1.57 16 22 C -0.15 -1.80 5.63 -26.76 -0.15 -1.95 16 23 C 0.12 1.77 3.09 -26.76 -0.08 1.69 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 O -0.54 -8.13 10.36 -56.37 -0.58 -8.71 16 26 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 27 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.07 1.21 7.63 -51.93 -0.40 0.81 16 29 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 30 H 0.03 0.59 5.80 -51.93 -0.30 0.29 16 31 H 0.03 0.58 7.65 -51.93 -0.40 0.18 16 32 H 0.27 6.90 7.22 -40.82 -0.29 6.60 16 33 H 0.06 1.16 7.68 -51.93 -0.40 0.76 16 34 H 0.10 1.89 5.64 -51.93 -0.29 1.60 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.36 3.85 9.08 45.56 0.41 4.26 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -28.43 333.51 -6.92 -35.35 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.34 Total: 6.46 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -1.82 Total: -1.88 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 1.10 Total: -41.74 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.82 Total: -20.40 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.08 Total: 17.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.43 -6.92 -35.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.119 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds