Wall clock time and date at job start Tue Mar 31 2020 02:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47444 * 23.74916 * 3 2 1 5 5 N 1.46498 * 109.47090 * 176.72709 * 4 3 2 6 6 C 1.46502 * 119.99848 * 87.45666 * 5 4 3 7 7 C 1.50700 * 109.46995 * 88.06652 * 6 5 4 8 8 H 1.08002 * 120.00486 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99711 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00242 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46981 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46848 * 119.99954 * 11 9 7 14 14 H 1.48500 * 109.47129 * 239.99942 * 11 9 7 15 15 C 1.34773 * 120.00330 * 267.45323 * 5 4 3 16 16 O 1.21285 * 119.99649 * 4.92940 * 15 5 4 17 17 C 1.50704 * 120.00282 * 184.92423 * 15 5 4 18 18 H 1.09003 * 109.46448 * 326.34114 * 17 15 5 19 19 C 1.52993 * 109.47003 * 86.34040 * 17 15 5 20 20 C 1.52998 * 109.47289 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46883 * 300.00169 * 20 19 17 22 22 C 1.53003 * 109.47265 * 59.99929 * 21 20 19 23 23 C 1.52997 * 109.46865 * 299.99785 * 22 21 20 24 24 H 1.09003 * 109.47193 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.47430 * 300.00345 * 23 22 21 26 26 H 1.09005 * 109.47127 * 263.74432 * 3 2 1 27 27 H 1.08999 * 109.46704 * 143.75151 * 3 2 1 28 28 H 1.09000 * 109.46838 * 56.72782 * 4 3 2 29 29 H 1.08993 * 109.46989 * 296.73067 * 4 3 2 30 30 H 1.08998 * 109.47321 * 328.07135 * 6 5 4 31 31 H 1.09002 * 109.47309 * 208.06648 * 6 5 4 32 32 H 0.97002 * 119.99862 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.47228 * 300.00099 * 19 17 15 34 34 H 1.08998 * 109.47573 * 60.00197 * 19 17 15 35 35 H 1.09006 * 109.47285 * 59.99576 * 20 19 17 36 36 H 1.09003 * 109.47556 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.47500 * 180.02562 * 21 20 19 38 38 H 1.09010 * 109.47138 * 299.99637 * 21 20 19 39 39 H 1.08993 * 109.47228 * 60.00010 * 22 21 20 40 40 H 1.09001 * 109.46704 * 180.02562 * 22 21 20 41 41 H 0.96704 * 114.00152 * 299.99593 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3194 -0.5809 5 7 4.5815 -1.2876 -0.6534 6 6 5.3813 -1.7073 0.5001 7 6 5.6202 -3.1936 0.4317 8 1 5.2170 -3.7682 -0.3891 9 6 6.3544 -3.8200 1.4164 10 7 6.8458 -3.1203 2.4157 11 14 6.6511 -5.6623 1.3312 12 1 5.9978 -6.2133 0.1168 13 1 8.1112 -5.9262 1.2701 14 1 6.0808 -6.3119 2.5387 15 6 5.1916 -0.8724 -1.7811 16 8 4.5326 -0.4408 -2.7033 17 6 6.6925 -0.9441 -1.8962 18 1 7.1407 -0.7638 -0.9191 19 6 7.0999 -2.3315 -2.3961 20 6 8.6237 -2.4046 -2.5124 21 6 9.1112 -1.3430 -3.5004 22 6 8.7039 0.0445 -3.0004 23 6 7.1801 0.1175 -2.8842 24 1 6.8897 1.1061 -2.5284 25 8 6.5927 -0.1186 -4.1653 26 1 2.9713 0.1128 1.0216 27 1 2.9709 0.8296 -0.6077 28 1 2.7083 -1.4591 -1.5810 29 1 2.8044 -2.1437 0.0591 30 1 4.8471 -1.4672 1.4194 31 1 6.3378 -1.1847 0.4886 32 1 7.3621 -3.5609 3.1087 33 1 6.7529 -3.0878 -1.6920 34 1 6.6516 -2.5118 -3.3732 35 1 9.0717 -2.2244 -1.5351 36 1 8.9139 -3.3929 -2.8690 37 1 10.1968 -1.3953 -3.5836 38 1 8.6632 -1.5231 -4.4777 39 1 9.1518 0.2246 -2.0232 40 1 9.0509 0.8007 -3.7046 41 1 6.8579 0.5182 -4.8431 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181078781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:23 Heat of formation + Delta-G solvation = -79.135680 kcal Electronic energy + Delta-G solvation = -23052.006499 eV Core-core repulsion = 19738.219187 eV Total energy + Delta-G solvation = -3313.787312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89498 -37.92222 -36.52665 -35.15152 -34.56365 -32.91595 -31.55761 -30.12323 -29.41449 -27.20405 -24.49918 -23.14653 -22.40168 -21.92886 -19.60880 -18.22743 -17.38218 -16.59848 -16.49996 -16.35901 -15.62870 -14.95463 -14.62032 -14.38547 -14.25273 -14.08369 -13.73961 -13.15681 -12.88020 -12.60244 -12.41831 -12.32049 -12.18549 -11.97127 -11.87753 -11.60679 -11.45599 -11.26333 -11.02220 -10.92728 -10.75853 -10.64425 -10.52076 -10.21427 -10.12930 -9.82439 -9.61692 -9.44341 -8.80137 -8.56103 -7.81837 -6.24224 -4.29977 2.89423 2.98346 3.18234 3.28099 3.30819 3.42028 3.75359 4.28350 4.42448 4.62488 4.97253 5.03127 5.10052 5.17531 5.29522 5.40492 5.51493 5.59495 5.61992 5.72032 5.72900 5.85428 5.86605 5.98990 6.12176 6.21222 6.26618 6.31776 6.43569 6.45861 6.55165 6.67331 6.86742 7.00092 7.13242 7.46349 7.70718 7.74628 7.99242 8.04775 8.28360 8.75172 9.03525 9.37440 10.82371 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.008737 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.081103 B = 3204.027301 C = 5562.880046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.222 3.778 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.601 5.601 6 C 0.235 3.765 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.890 3.110 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.520 3.480 16 O -0.549 6.549 17 C -0.090 4.090 18 H 0.107 0.893 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.151 4.151 23 C 0.123 3.877 24 H 0.047 0.953 25 O -0.538 6.538 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.265 0.735 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 5.708 -6.573 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.096 4.096 3 C -0.086 4.086 4 C 0.002 3.998 5 N -0.332 5.332 6 C 0.115 3.885 7 C -0.572 4.572 8 H 0.082 0.918 9 C -0.135 4.135 10 N -0.528 5.528 11 Si 0.717 3.283 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.308 3.692 16 O -0.427 6.427 17 C -0.111 4.111 18 H 0.125 0.875 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.152 4.152 22 C -0.189 4.189 23 C 0.063 3.937 24 H 0.065 0.935 25 O -0.341 6.341 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.849 5.405 -6.539 8.949 hybrid contribution 1.084 -0.579 0.061 1.231 sum 3.934 4.826 -6.479 8.986 Atomic orbital electron populations 1.81171 1.13113 1.09093 1.09675 1.29167 0.95182 0.92768 0.92466 1.19797 0.81196 1.02472 1.05184 1.21065 0.82073 0.94604 1.02083 1.48238 1.05199 1.64036 1.15713 1.19516 0.90866 0.95456 0.82638 1.21489 1.33889 0.92904 1.08934 0.91799 1.24897 0.95321 0.98282 0.95047 1.69914 1.35268 1.35877 1.11707 0.86559 0.78132 0.85324 0.78244 1.19572 1.20792 1.20942 1.20453 0.90148 0.76933 0.81627 1.90640 1.66686 1.46581 1.38768 1.21323 0.93048 0.97242 0.99498 0.87496 1.21463 0.95160 0.95611 1.02257 1.21490 0.96277 0.98164 0.99313 1.21457 0.99468 0.94482 0.99758 1.22257 0.96817 0.97885 1.01903 1.21519 0.90618 0.96753 0.84778 0.93473 1.86754 1.71909 1.56049 1.19352 0.87086 0.87434 0.90234 0.89528 0.94519 0.94072 0.92573 0.88540 0.91902 0.91711 0.92245 0.92798 0.91651 0.91063 0.92176 0.79395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.73 18.54 42.16 0.78 -6.95 16 2 C 0.22 3.29 15.43 -20.76 -0.32 2.97 16 3 C -0.05 -0.60 6.03 -29.52 -0.18 -0.78 16 4 C 0.13 2.07 5.36 -4.04 -0.02 2.04 16 5 N -0.60 -11.09 2.46 -175.06 -0.43 -11.52 16 6 C 0.23 4.87 4.98 -5.19 -0.03 4.85 16 7 C -0.53 -12.45 7.54 -34.44 -0.26 -12.71 16 8 H 0.06 1.54 7.41 -52.49 -0.39 1.15 16 9 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -22.68 13.29 55.43 0.74 -21.95 16 11 Si 0.89 19.42 29.54 -169.99 -5.02 14.40 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 15 C 0.52 9.89 6.75 -10.99 -0.07 9.81 16 16 O -0.55 -11.53 14.67 -15.61 -0.23 -11.76 16 17 C -0.09 -1.53 1.77 -91.77 -0.16 -1.69 16 18 H 0.11 1.85 5.91 -51.93 -0.31 1.55 16 19 C -0.11 -1.86 5.04 -26.74 -0.13 -1.99 16 20 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 21 C -0.11 -1.42 5.78 -26.73 -0.15 -1.58 16 22 C -0.15 -1.79 5.64 -26.73 -0.15 -1.94 16 23 C 0.12 1.78 3.02 -26.73 -0.08 1.70 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 O -0.54 -8.18 10.40 -56.39 -0.59 -8.77 16 26 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 29 H 0.09 1.40 8.09 -51.93 -0.42 0.98 16 30 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.04 0.88 5.83 -51.93 -0.30 0.58 16 32 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.10 1.91 5.66 -51.93 -0.29 1.61 16 34 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.84 7.68 -51.92 -0.40 0.44 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.36 3.87 9.08 45.56 0.41 4.29 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -28.64 335.22 -6.93 -35.57 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.42 Total: 5.53 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.82 Total: 0.39 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 1.09 Total: -40.42 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.82 Total: -20.53 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.64 -6.93 -35.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.562 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds