Wall clock time and date at job start Tue Mar 31 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47444 * 23.74916 * 3 2 1 5 5 N 1.46498 * 109.47090 * 176.72709 * 4 3 2 6 6 C 1.46502 * 119.99848 * 87.45666 * 5 4 3 7 7 C 1.50700 * 109.46995 * 88.06652 * 6 5 4 8 8 H 1.08002 * 120.00486 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99711 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00242 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46981 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46848 * 119.99954 * 11 9 7 14 14 H 1.48500 * 109.47129 * 239.99942 * 11 9 7 15 15 C 1.34773 * 120.00330 * 267.45323 * 5 4 3 16 16 O 1.21285 * 119.99649 * 4.92940 * 15 5 4 17 17 C 1.50704 * 120.00282 * 184.92423 * 15 5 4 18 18 H 1.09003 * 109.46448 * 326.34114 * 17 15 5 19 19 C 1.52993 * 109.47003 * 86.34040 * 17 15 5 20 20 C 1.52998 * 109.47289 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46883 * 300.00169 * 20 19 17 22 22 C 1.53003 * 109.47265 * 59.99929 * 21 20 19 23 23 C 1.52997 * 109.46865 * 299.99785 * 22 21 20 24 24 H 1.09003 * 109.47193 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.47430 * 300.00345 * 23 22 21 26 26 H 1.09005 * 109.47127 * 263.74432 * 3 2 1 27 27 H 1.08999 * 109.46704 * 143.75151 * 3 2 1 28 28 H 1.09000 * 109.46838 * 56.72782 * 4 3 2 29 29 H 1.08993 * 109.46989 * 296.73067 * 4 3 2 30 30 H 1.08998 * 109.47321 * 328.07135 * 6 5 4 31 31 H 1.09002 * 109.47309 * 208.06648 * 6 5 4 32 32 H 0.97002 * 119.99862 * 179.97438 * 10 9 7 33 33 H 1.09004 * 109.47228 * 300.00099 * 19 17 15 34 34 H 1.08998 * 109.47573 * 60.00197 * 19 17 15 35 35 H 1.09006 * 109.47285 * 59.99576 * 20 19 17 36 36 H 1.09003 * 109.47556 * 180.02562 * 20 19 17 37 37 H 1.09002 * 109.47500 * 180.02562 * 21 20 19 38 38 H 1.09010 * 109.47138 * 299.99637 * 21 20 19 39 39 H 1.08993 * 109.47228 * 60.00010 * 22 21 20 40 40 H 1.09001 * 109.46704 * 180.02562 * 22 21 20 41 41 H 0.96704 * 114.00152 * 299.99593 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3194 -0.5809 5 7 4.5815 -1.2876 -0.6534 6 6 5.3813 -1.7073 0.5001 7 6 5.6202 -3.1936 0.4317 8 1 5.2170 -3.7682 -0.3891 9 6 6.3544 -3.8200 1.4164 10 7 6.8458 -3.1203 2.4157 11 14 6.6511 -5.6623 1.3312 12 1 5.9978 -6.2133 0.1168 13 1 8.1112 -5.9262 1.2701 14 1 6.0808 -6.3119 2.5387 15 6 5.1916 -0.8724 -1.7811 16 8 4.5326 -0.4408 -2.7033 17 6 6.6925 -0.9441 -1.8962 18 1 7.1407 -0.7638 -0.9191 19 6 7.0999 -2.3315 -2.3961 20 6 8.6237 -2.4046 -2.5124 21 6 9.1112 -1.3430 -3.5004 22 6 8.7039 0.0445 -3.0004 23 6 7.1801 0.1175 -2.8842 24 1 6.8897 1.1061 -2.5284 25 8 6.5927 -0.1186 -4.1653 26 1 2.9713 0.1128 1.0216 27 1 2.9709 0.8296 -0.6077 28 1 2.7083 -1.4591 -1.5810 29 1 2.8044 -2.1437 0.0591 30 1 4.8471 -1.4672 1.4194 31 1 6.3378 -1.1847 0.4886 32 1 7.3621 -3.5609 3.1087 33 1 6.7529 -3.0878 -1.6920 34 1 6.6516 -2.5118 -3.3732 35 1 9.0717 -2.2244 -1.5351 36 1 8.9139 -3.3929 -2.8690 37 1 10.1968 -1.3953 -3.5836 38 1 8.6632 -1.5231 -4.4777 39 1 9.1518 0.2246 -2.0232 40 1 9.0509 0.8007 -3.7046 41 1 6.8579 0.5182 -4.8431 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181078781.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:22 Heat of formation + Delta-G solvation = -95.307937 kcal Electronic energy + Delta-G solvation = -23052.707781 eV Core-core repulsion = 19738.219187 eV Total energy + Delta-G solvation = -3314.488593 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28498 -39.18540 -37.82920 -36.69531 -35.75102 -34.64708 -32.94477 -31.36635 -30.57938 -28.94292 -25.82174 -24.87154 -23.60373 -23.15964 -20.79767 -19.70741 -18.70968 -18.25075 -17.93162 -17.59549 -17.06343 -16.34696 -16.06945 -15.73147 -15.63724 -15.27875 -14.97884 -14.49010 -14.27988 -14.20373 -13.74374 -13.61019 -13.54553 -13.32450 -13.20530 -12.99215 -12.89086 -12.67836 -12.59840 -12.43752 -12.14289 -11.94549 -11.77063 -11.75372 -11.54217 -11.35714 -10.92009 -10.64207 -10.47975 -10.14422 -9.40972 -8.11891 -6.20989 1.42602 1.49077 1.56171 1.63642 1.77087 1.90915 2.34055 2.49148 3.17660 3.20424 3.53659 3.75843 3.91623 4.05469 4.11447 4.16424 4.33629 4.38713 4.40960 4.55055 4.61845 4.63637 4.71356 4.87955 4.98010 5.03133 5.04725 5.06757 5.17835 5.30012 5.32567 5.39283 5.40953 5.57790 5.66057 5.77240 5.93313 6.17225 6.53663 6.66174 6.92328 7.15383 7.44143 7.55433 8.93457 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.008737 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.081103 B = 3204.027301 C = 5562.880046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.029 4.029 4 C 0.124 3.876 5 N -0.600 5.600 6 C 0.249 3.751 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.031 3.969 10 N -0.915 5.915 11 Si 0.937 3.063 12 H -0.274 1.274 13 H -0.279 1.279 14 H -0.285 1.285 15 C 0.516 3.484 16 O -0.569 6.569 17 C -0.092 4.092 18 H 0.102 0.898 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.144 4.144 23 C 0.125 3.875 24 H 0.052 0.948 25 O -0.560 6.560 26 H 0.132 0.868 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 6.451 -7.091 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.070 4.070 4 C -0.001 4.001 5 N -0.331 5.331 6 C 0.128 3.872 7 C -0.569 4.569 8 H 0.069 0.931 9 C -0.169 4.169 10 N -0.554 5.554 11 Si 0.764 3.236 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.211 1.211 15 C 0.305 3.695 16 O -0.449 6.449 17 C -0.113 4.113 18 H 0.120 0.880 19 C -0.138 4.138 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.182 4.182 23 C 0.066 3.934 24 H 0.070 0.930 25 O -0.366 6.366 26 H 0.150 0.850 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 4.040 6.153 -7.069 10.206 hybrid contribution 0.679 -0.835 0.173 1.090 sum 4.719 5.319 -6.896 9.905 Atomic orbital electron populations 1.81197 1.14268 1.10283 1.11093 1.29270 0.95144 0.91601 0.91214 1.19704 0.80021 1.00963 1.06333 1.21124 0.80896 0.96295 1.01804 1.48190 1.05972 1.63748 1.15145 1.19225 0.90924 0.93955 0.83087 1.21622 1.33021 0.94170 1.08041 0.93085 1.25390 0.95525 1.00974 0.95052 1.69972 1.36230 1.36908 1.12311 0.85831 0.77959 0.82105 0.77741 1.19905 1.20476 1.21096 1.20850 0.91065 0.76337 0.81211 1.90622 1.67364 1.47630 1.39276 1.21362 0.91581 0.98045 1.00292 0.87997 1.21327 0.97118 0.95000 1.00388 1.21484 0.94108 0.99591 0.99938 1.21424 1.00700 0.93853 0.98663 1.22221 0.94618 0.98323 1.02992 1.21487 0.92262 0.95637 0.84024 0.93009 1.86698 1.72582 1.57253 1.20080 0.85032 0.86348 0.91179 0.89710 0.94887 0.94453 0.92572 0.91572 0.93336 0.92256 0.91812 0.90611 0.91898 0.90641 0.89279 0.77135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.41 18.54 20.01 0.37 -16.04 16 2 C 0.24 6.97 15.43 89.44 1.38 8.35 16 3 C -0.03 -0.73 6.03 28.79 0.17 -0.56 16 4 C 0.12 3.95 5.36 86.38 0.46 4.42 16 5 N -0.60 -21.98 2.46 -826.16 -2.03 -24.01 16 6 C 0.25 10.26 4.98 85.63 0.43 10.69 16 7 C -0.53 -24.80 7.54 25.60 0.19 -24.61 16 8 H 0.05 2.50 7.41 -2.91 -0.02 2.47 16 9 C 0.03 1.51 5.46 84.65 0.46 1.98 16 10 N -0.91 -46.41 13.29 21.45 0.28 -46.12 16 11 Si 0.94 39.78 29.54 68.60 2.03 41.80 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 13 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.52 19.48 6.75 87.66 0.59 20.07 16 16 O -0.57 -23.68 14.67 17.19 0.25 -23.43 16 17 C -0.09 -3.07 1.77 -11.54 -0.02 -3.09 16 18 H 0.10 3.49 5.91 -2.39 -0.01 3.48 16 19 C -0.10 -3.48 5.04 30.59 0.15 -3.33 16 20 C -0.11 -3.22 5.92 30.59 0.18 -3.03 16 21 C -0.11 -2.43 5.78 30.60 0.18 -2.26 16 22 C -0.14 -3.00 5.64 30.59 0.17 -2.82 16 23 C 0.13 3.40 3.02 30.59 0.09 3.49 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 O -0.56 -16.14 10.40 -128.74 -1.34 -17.47 16 26 H 0.13 2.84 8.14 -2.38 -0.02 2.83 16 27 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.07 2.38 7.42 -2.39 -0.02 2.36 16 29 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 30 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 31 H 0.04 1.60 5.83 -2.39 -0.01 1.58 16 32 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 33 H 0.07 2.67 5.66 -2.39 -0.01 2.65 16 34 H 0.05 1.79 7.68 -2.39 -0.02 1.77 16 35 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.46 7.68 -2.38 -0.02 1.44 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.38 7.30 9.08 -74.05 -0.67 6.63 16 Total: -1.00 -60.40 335.22 4.38 -56.02 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.37 Total: 19.96 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.45 Total: 9.29 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.37 Total: -86.17 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.09 Total: -40.90 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.80 kcal Total: -60.40 4.38 -56.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078781.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.291 kcal (2) G-P(sol) polarization free energy of solvation -60.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds