Wall clock time and date at job start Tue Mar 31 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47239 * 304.03387 * 3 2 1 5 5 N 1.46496 * 109.47309 * 179.11232 * 4 3 2 6 6 C 1.46494 * 120.00366 * 86.00880 * 5 4 3 7 7 C 1.50696 * 109.47271 * 95.61467 * 6 5 4 8 8 H 1.08001 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99837 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46860 * 59.99826 * 11 9 7 13 13 H 1.48495 * 109.47325 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46925 * 300.00358 * 11 9 7 15 15 C 1.34780 * 119.99880 * 266.00652 * 5 4 3 16 16 O 1.21286 * 119.99680 * 355.81515 * 15 5 4 17 17 C 1.50702 * 120.00298 * 175.80548 * 15 5 4 18 18 H 1.08999 * 109.47033 * 333.30367 * 17 15 5 19 19 C 1.53000 * 109.46557 * 93.30210 * 17 15 5 20 20 C 1.53000 * 109.46722 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.47257 * 300.00088 * 20 19 17 22 22 C 1.53001 * 109.46817 * 60.00130 * 21 20 19 23 23 C 1.52993 * 109.47189 * 213.30393 * 17 15 5 24 24 H 1.08999 * 109.47112 * 299.99926 * 23 17 15 25 25 O 1.42901 * 109.47606 * 60.00114 * 23 17 15 26 26 H 1.09001 * 109.47411 * 64.03585 * 3 2 1 27 27 H 1.09004 * 109.47286 * 184.03903 * 3 2 1 28 28 H 1.09007 * 109.46915 * 299.11134 * 4 3 2 29 29 H 1.09002 * 109.46997 * 59.10795 * 4 3 2 30 30 H 1.09004 * 109.46818 * 215.61644 * 6 5 4 31 31 H 1.09003 * 109.46924 * 335.61413 * 6 5 4 32 32 H 0.97001 * 119.99970 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47027 * 299.99856 * 19 17 15 34 34 H 1.08999 * 109.47320 * 60.00333 * 19 17 15 35 35 H 1.09002 * 109.47144 * 179.97438 * 20 19 17 36 36 H 1.08999 * 109.47022 * 60.00064 * 20 19 17 37 37 H 1.08999 * 109.47085 * 299.99937 * 21 20 19 38 38 H 1.09004 * 109.46608 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.46713 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47451 * 60.00031 * 22 21 20 41 41 H 0.96700 * 114.00479 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1185 -0.8065 1.1954 5 7 4.5833 -0.8236 1.1835 6 6 5.3337 0.2692 1.8069 7 6 5.7123 -0.1194 3.2129 8 1 5.4231 -1.0841 3.6029 9 6 6.4277 0.7567 4.0013 10 7 6.7803 1.9313 3.5262 11 14 6.8976 0.2748 5.7438 12 1 7.7406 -0.9472 5.7091 13 1 7.6582 1.3826 6.3758 14 1 5.6678 0.0055 6.5315 15 6 5.2405 -1.8448 0.5990 16 8 4.6217 -2.7864 0.1501 17 6 6.7442 -1.8167 0.5030 18 1 7.0886 -0.7825 0.4979 19 6 7.3456 -2.5487 1.7044 20 6 8.8723 -2.5195 1.6072 21 6 9.3145 -3.2102 0.3155 22 6 8.7129 -2.4781 -0.8858 23 6 7.1858 -2.5076 -0.7887 24 1 6.8414 -3.5417 -0.7836 25 8 6.6240 -1.8239 -1.9108 26 1 2.9716 -0.4491 -0.9239 27 1 2.9710 1.0260 0.0724 28 1 2.7680 -0.3475 2.1200 29 1 2.7426 -1.8276 1.1315 30 1 6.2366 0.4660 1.2288 31 1 4.7155 1.1666 1.8319 32 1 7.2833 2.5478 4.0810 33 1 7.0310 -2.0564 2.6245 34 1 7.0012 -3.5828 1.7094 35 1 9.3008 -3.0406 2.4633 36 1 9.2164 -1.4853 1.6024 37 1 8.9704 -4.2444 0.3203 38 1 10.4021 -3.1889 0.2462 39 1 9.0276 -2.9704 -1.8061 40 1 9.0570 -1.4438 -0.8906 41 1 6.8629 -2.2081 -2.7654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181078782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:25 Heat of formation + Delta-G solvation = -83.208813 kcal Electronic energy + Delta-G solvation = -23013.109745 eV Core-core repulsion = 19699.145809 eV Total energy + Delta-G solvation = -3313.963936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89507 -37.85324 -36.53005 -35.31423 -35.04994 -32.93040 -31.54930 -30.17961 -29.17623 -27.19909 -24.51118 -23.15733 -22.48978 -21.85614 -19.71750 -18.29378 -17.38109 -16.99194 -16.55215 -16.37724 -15.71601 -14.73120 -14.62675 -14.30178 -14.27404 -14.09110 -13.61149 -13.39681 -13.06002 -12.78727 -12.46338 -12.41179 -12.18322 -12.07363 -11.86998 -11.66087 -11.38760 -11.21776 -11.04346 -10.99108 -10.82510 -10.64396 -10.52115 -10.28344 -10.13158 -9.87533 -9.74128 -9.58553 -8.90723 -8.57142 -7.82157 -6.23286 -4.29770 2.89499 2.99228 3.20263 3.26401 3.28152 3.43551 3.74658 4.28261 4.40744 4.44489 4.91924 4.98832 5.10134 5.22027 5.29437 5.40621 5.51020 5.52400 5.60292 5.68614 5.74433 5.75594 5.78799 5.94735 6.10292 6.20334 6.29674 6.32186 6.32758 6.39448 6.44607 6.65494 6.76272 6.86622 7.17648 7.46944 7.71443 7.75367 7.90093 8.00737 8.26112 8.74408 9.00201 9.37205 10.83297 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.008695 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.198486 B = 3219.591099 C = 5480.514109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.125 3.875 5 N -0.597 5.597 6 C 0.236 3.764 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.891 3.109 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.536 3.464 16 O -0.571 6.571 17 C -0.090 4.090 18 H 0.106 0.894 19 C -0.110 4.110 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.149 4.149 23 C 0.121 3.879 24 H 0.060 0.940 25 O -0.562 6.562 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.342 -5.823 -6.787 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.095 4.095 3 C -0.087 4.087 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.116 3.884 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.135 4.135 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.325 3.675 16 O -0.451 6.451 17 C -0.111 4.111 18 H 0.124 0.876 19 C -0.148 4.148 20 C -0.155 4.155 21 C -0.155 4.155 22 C -0.187 4.187 23 C 0.062 3.938 24 H 0.078 0.922 25 O -0.367 6.367 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.173 -5.729 -6.475 9.209 hybrid contribution 1.089 -0.322 0.621 1.295 sum 4.263 -6.050 -5.854 9.436 Atomic orbital electron populations 1.81166 1.13094 1.09578 1.09230 1.29164 0.95166 0.92512 0.92689 1.19802 0.81152 1.04717 1.03027 1.21090 0.82086 1.00700 0.96242 1.48160 1.04978 1.24249 1.55318 1.19506 0.91897 0.84286 0.92699 1.21415 1.35767 1.02437 0.97922 0.91956 1.24896 0.95503 0.94738 0.98349 1.69900 1.38090 1.07447 1.37160 0.86663 0.78811 0.78256 0.84443 1.19918 1.21184 1.20164 1.20292 0.89690 0.81409 0.76150 1.90572 1.69681 1.34850 1.50040 1.21185 0.92678 1.03061 0.94189 0.87632 1.21561 0.94632 0.99956 0.98671 1.21531 0.95942 1.01360 0.96698 1.21514 0.99784 0.99361 0.94807 1.22273 0.96253 1.01810 0.98372 1.21676 0.90932 0.95548 0.85690 0.92175 1.86557 1.75545 1.58383 1.16187 0.87300 0.87007 0.89705 0.89921 0.94057 0.94375 0.92423 0.87788 0.92460 0.91889 0.91227 0.92142 0.92103 0.92112 0.90974 0.78342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.79 18.54 42.15 0.78 -7.01 16 2 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 3 C -0.05 -0.63 6.03 -29.51 -0.18 -0.81 16 4 C 0.12 2.06 5.41 -4.04 -0.02 2.04 16 5 N -0.60 -11.39 2.47 -175.06 -0.43 -11.83 16 6 C 0.24 5.04 4.98 -5.20 -0.03 5.01 16 7 C -0.54 -12.64 7.52 -34.44 -0.26 -12.90 16 8 H 0.06 1.50 7.38 -52.49 -0.39 1.11 16 9 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -22.88 13.29 55.43 0.74 -22.14 16 11 Si 0.89 19.36 29.54 -169.99 -5.02 14.34 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 15 C 0.54 10.48 6.29 -10.98 -0.07 10.41 16 16 O -0.57 -12.21 15.74 5.55 0.09 -12.12 16 17 C -0.09 -1.57 1.70 -91.77 -0.16 -1.73 16 18 H 0.11 1.99 5.86 -51.93 -0.30 1.69 16 19 C -0.11 -1.84 5.19 -26.73 -0.14 -1.98 16 20 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 21 C -0.12 -1.38 5.92 -26.73 -0.16 -1.53 16 22 C -0.15 -1.81 5.55 -26.70 -0.15 -1.95 16 23 C 0.12 1.80 2.55 -26.71 -0.07 1.73 16 24 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 25 O -0.56 -8.35 12.94 -35.23 -0.46 -8.80 16 26 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 29 H 0.08 1.42 7.26 -51.93 -0.38 1.04 16 30 H 0.04 0.93 5.92 -51.93 -0.31 0.62 16 31 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 32 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.10 2.00 5.68 -51.93 -0.29 1.70 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.37 3.71 9.08 45.56 0.41 4.12 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -28.71 338.54 -6.44 -35.15 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.44 Total: 6.22 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.80 Total: 1.09 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 1.09 Total: -40.97 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.37 Total: -20.92 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.71 -6.44 -35.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.058 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds