Wall clock time and date at job start Tue Mar 31 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47239 * 304.03387 * 3 2 1 5 5 N 1.46496 * 109.47309 * 179.11232 * 4 3 2 6 6 C 1.46494 * 120.00366 * 86.00880 * 5 4 3 7 7 C 1.50696 * 109.47271 * 95.61467 * 6 5 4 8 8 H 1.08001 * 119.99970 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00021 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99837 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46860 * 59.99826 * 11 9 7 13 13 H 1.48495 * 109.47325 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46925 * 300.00358 * 11 9 7 15 15 C 1.34780 * 119.99880 * 266.00652 * 5 4 3 16 16 O 1.21286 * 119.99680 * 355.81515 * 15 5 4 17 17 C 1.50702 * 120.00298 * 175.80548 * 15 5 4 18 18 H 1.08999 * 109.47033 * 333.30367 * 17 15 5 19 19 C 1.53000 * 109.46557 * 93.30210 * 17 15 5 20 20 C 1.53000 * 109.46722 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.47257 * 300.00088 * 20 19 17 22 22 C 1.53001 * 109.46817 * 60.00130 * 21 20 19 23 23 C 1.52993 * 109.47189 * 213.30393 * 17 15 5 24 24 H 1.08999 * 109.47112 * 299.99926 * 23 17 15 25 25 O 1.42901 * 109.47606 * 60.00114 * 23 17 15 26 26 H 1.09001 * 109.47411 * 64.03585 * 3 2 1 27 27 H 1.09004 * 109.47286 * 184.03903 * 3 2 1 28 28 H 1.09007 * 109.46915 * 299.11134 * 4 3 2 29 29 H 1.09002 * 109.46997 * 59.10795 * 4 3 2 30 30 H 1.09004 * 109.46818 * 215.61644 * 6 5 4 31 31 H 1.09003 * 109.46924 * 335.61413 * 6 5 4 32 32 H 0.97001 * 119.99970 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47027 * 299.99856 * 19 17 15 34 34 H 1.08999 * 109.47320 * 60.00333 * 19 17 15 35 35 H 1.09002 * 109.47144 * 179.97438 * 20 19 17 36 36 H 1.08999 * 109.47022 * 60.00064 * 20 19 17 37 37 H 1.08999 * 109.47085 * 299.99937 * 21 20 19 38 38 H 1.09004 * 109.46608 * 179.97438 * 21 20 19 39 39 H 1.09005 * 109.46713 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.47451 * 60.00031 * 22 21 20 41 41 H 0.96700 * 114.00479 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1185 -0.8065 1.1954 5 7 4.5833 -0.8236 1.1835 6 6 5.3337 0.2692 1.8069 7 6 5.7123 -0.1194 3.2129 8 1 5.4231 -1.0841 3.6029 9 6 6.4277 0.7567 4.0013 10 7 6.7803 1.9313 3.5262 11 14 6.8976 0.2748 5.7438 12 1 7.7406 -0.9472 5.7091 13 1 7.6582 1.3826 6.3758 14 1 5.6678 0.0055 6.5315 15 6 5.2405 -1.8448 0.5990 16 8 4.6217 -2.7864 0.1501 17 6 6.7442 -1.8167 0.5030 18 1 7.0886 -0.7825 0.4979 19 6 7.3456 -2.5487 1.7044 20 6 8.8723 -2.5195 1.6072 21 6 9.3145 -3.2102 0.3155 22 6 8.7129 -2.4781 -0.8858 23 6 7.1858 -2.5076 -0.7887 24 1 6.8414 -3.5417 -0.7836 25 8 6.6240 -1.8239 -1.9108 26 1 2.9716 -0.4491 -0.9239 27 1 2.9710 1.0260 0.0724 28 1 2.7680 -0.3475 2.1200 29 1 2.7426 -1.8276 1.1315 30 1 6.2366 0.4660 1.2288 31 1 4.7155 1.1666 1.8319 32 1 7.2833 2.5478 4.0810 33 1 7.0310 -2.0564 2.6245 34 1 7.0012 -3.5828 1.7094 35 1 9.3008 -3.0406 2.4633 36 1 9.2164 -1.4853 1.6024 37 1 8.9704 -4.2444 0.3203 38 1 10.4021 -3.1889 0.2462 39 1 9.0276 -2.9704 -1.8061 40 1 9.0570 -1.4438 -0.8906 41 1 6.8629 -2.2081 -2.7654 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181078782.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:25 Heat of formation + Delta-G solvation = -100.935329 kcal Electronic energy + Delta-G solvation = -23013.878424 eV Core-core repulsion = 19699.145809 eV Total energy + Delta-G solvation = -3314.732615 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32190 -39.12438 -37.85933 -36.75520 -36.34661 -34.68166 -32.96243 -31.42928 -30.34054 -28.96963 -25.84881 -24.92632 -23.68040 -23.08003 -20.87816 -19.81290 -18.74907 -18.29023 -18.11208 -17.90982 -17.18544 -16.32707 -15.94881 -15.75199 -15.62924 -15.23266 -14.84638 -14.60392 -14.39248 -14.18306 -14.03406 -13.72398 -13.55537 -13.44336 -13.33892 -13.07835 -12.82817 -12.71546 -12.56804 -12.44808 -12.13664 -12.04710 -11.79356 -11.66270 -11.60172 -11.40844 -11.06166 -10.75330 -10.52323 -10.31133 -9.45251 -8.12445 -6.23114 1.46235 1.49057 1.54187 1.60238 1.75241 1.90048 2.29548 2.48907 3.14651 3.19347 3.33381 3.69063 3.87864 4.05251 4.12003 4.16353 4.30111 4.37507 4.39637 4.49915 4.52907 4.56808 4.62042 4.84456 4.91657 4.98834 5.02264 5.08312 5.18297 5.25385 5.27382 5.33437 5.39144 5.50629 5.59316 5.73707 5.91047 6.15736 6.51596 6.60637 6.89592 7.00935 7.39030 7.50240 8.92970 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009863 B = 0.008695 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.198486 B = 3219.591099 C = 5480.514109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.030 4.030 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.251 3.749 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.030 3.970 10 N -0.916 5.916 11 Si 0.940 3.060 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.278 1.278 15 C 0.530 3.470 16 O -0.590 6.590 17 C -0.090 4.090 18 H 0.088 0.912 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.142 4.142 23 C 0.125 3.875 24 H 0.054 0.946 25 O -0.581 6.581 26 H 0.117 0.883 27 H 0.129 0.871 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -6.647 -7.395 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.072 4.072 3 C -0.071 4.071 4 C -0.005 4.005 5 N -0.328 5.328 6 C 0.130 3.870 7 C -0.573 4.573 8 H 0.072 0.928 9 C -0.171 4.171 10 N -0.555 5.555 11 Si 0.766 3.234 12 H -0.192 1.192 13 H -0.212 1.212 14 H -0.204 1.204 15 C 0.320 3.680 16 O -0.473 6.473 17 C -0.112 4.112 18 H 0.106 0.894 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.150 4.150 22 C -0.180 4.180 23 C 0.066 3.934 24 H 0.072 0.928 25 O -0.389 6.389 26 H 0.135 0.865 27 H 0.147 0.853 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.320 -6.564 -7.097 10.589 hybrid contribution 0.692 -0.087 0.794 1.056 sum 5.011 -6.652 -6.303 10.445 Atomic orbital electron populations 1.81194 1.14126 1.10844 1.10363 1.29188 0.95031 0.91357 0.91587 1.19682 0.80185 1.05215 1.01990 1.21178 0.80747 1.00922 0.97605 1.48128 1.05931 1.23671 1.55029 1.19182 0.91545 0.84539 0.91731 1.21562 1.35084 1.01826 0.98794 0.92782 1.25452 0.95692 0.94752 1.01167 1.69981 1.39088 1.08249 1.38207 0.85879 0.78402 0.78088 0.80998 1.19186 1.21200 1.20369 1.20719 0.90672 0.80988 0.75602 1.90552 1.70304 1.35412 1.50982 1.21217 0.91159 1.02486 0.96298 0.89434 1.21482 0.96730 0.99372 0.96927 1.21519 0.93745 1.01203 0.98850 1.21505 1.01158 0.99321 0.92990 1.22225 0.93826 1.01903 1.00005 1.21586 0.92811 0.94455 0.84537 0.92765 1.86498 1.76060 1.58928 1.17389 0.86479 0.85322 0.89641 0.90530 0.95124 0.94984 0.92523 0.90829 0.92268 0.90802 0.92486 0.91213 0.89788 0.89092 0.91690 0.75880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.40 18.54 20.01 0.37 -16.03 16 2 C 0.25 7.12 15.43 89.44 1.38 8.50 16 3 C -0.03 -0.78 6.03 28.79 0.17 -0.61 16 4 C 0.12 3.94 5.41 86.38 0.47 4.41 16 5 N -0.60 -22.87 2.47 -826.14 -2.04 -24.91 16 6 C 0.25 10.82 4.98 85.63 0.43 11.24 16 7 C -0.53 -25.36 7.52 25.60 0.19 -25.17 16 8 H 0.05 2.63 7.38 -2.91 -0.02 2.61 16 9 C 0.03 1.48 5.46 84.66 0.46 1.94 16 10 N -0.92 -47.42 13.29 21.45 0.28 -47.13 16 11 Si 0.94 39.57 29.54 68.60 2.03 41.60 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 14 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 15 C 0.53 20.75 6.29 87.66 0.55 21.30 16 16 O -0.59 -25.09 15.74 -3.05 -0.05 -25.13 16 17 C -0.09 -3.15 1.70 -11.54 -0.02 -3.16 16 18 H 0.09 3.35 5.86 -2.39 -0.01 3.34 16 19 C -0.11 -3.55 5.19 30.59 0.16 -3.39 16 20 C -0.12 -3.09 5.92 30.60 0.18 -2.91 16 21 C -0.11 -2.32 5.92 30.60 0.18 -2.14 16 22 C -0.14 -3.06 5.55 30.61 0.17 -2.89 16 23 C 0.13 3.55 2.55 30.61 0.08 3.63 16 24 H 0.05 1.61 7.85 -2.39 -0.02 1.59 16 25 O -0.58 -16.35 12.94 -148.98 -1.93 -18.28 16 26 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.09 2.77 8.10 -2.38 -0.02 2.75 16 29 H 0.08 2.61 7.26 -2.39 -0.02 2.59 16 30 H 0.03 1.41 5.92 -2.38 -0.01 1.40 16 31 H 0.03 1.43 8.03 -2.39 -0.02 1.41 16 32 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 33 H 0.07 2.87 5.68 -2.39 -0.01 2.86 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.39 6.96 9.08 -74.06 -0.67 6.29 16 Total: -1.00 -60.81 338.54 3.43 -57.38 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.37 Total: 21.78 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 4.40 Total: 10.74 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.39 Total: -88.07 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -1.98 Total: -43.42 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Total: -60.81 3.43 -57.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078782.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.559 kcal (2) G-P(sol) polarization free energy of solvation -60.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds