Wall clock time and date at job start Tue Mar 31 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47131 * 303.01963 * 3 2 1 5 5 N 1.46499 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00134 * 94.01186 * 5 4 3 7 7 C 1.50702 * 109.47379 * 84.85886 * 6 5 4 8 8 H 1.08002 * 119.99947 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00089 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99793 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47466 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47236 * 120.00631 * 11 9 7 14 14 H 1.48502 * 109.47080 * 240.00338 * 11 9 7 15 15 C 1.34784 * 120.00302 * 274.00963 * 5 4 3 16 16 O 1.21274 * 119.99611 * 5.11362 * 15 5 4 17 17 C 1.50694 * 119.99818 * 185.11121 * 15 5 4 18 18 H 1.08996 * 109.47858 * 40.88292 * 17 15 5 19 19 C 1.53001 * 109.47027 * 280.88118 * 17 15 5 20 20 C 1.53000 * 109.47220 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.47614 * 59.99614 * 20 19 17 22 22 C 1.53001 * 109.47142 * 300.00434 * 21 20 19 23 23 C 1.53002 * 109.47065 * 160.88512 * 17 15 5 24 24 H 1.09001 * 109.47384 * 59.99063 * 23 17 15 25 25 O 1.42899 * 109.46766 * 300.00023 * 23 17 15 26 26 H 1.09004 * 109.47336 * 183.02834 * 3 2 1 27 27 H 1.08999 * 109.47788 * 63.02649 * 3 2 1 28 28 H 1.08994 * 109.47518 * 300.00508 * 4 3 2 29 29 H 1.09003 * 109.46942 * 60.00629 * 4 3 2 30 30 H 1.08996 * 109.47536 * 204.86489 * 6 5 4 31 31 H 1.09002 * 109.46989 * 324.86578 * 6 5 4 32 32 H 0.97003 * 120.00074 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.47149 * 300.00126 * 19 17 15 34 34 H 1.08998 * 109.47453 * 60.00225 * 19 17 15 35 35 H 1.08996 * 109.47297 * 180.02562 * 20 19 17 36 36 H 1.09009 * 109.47127 * 299.99714 * 20 19 17 37 37 H 1.09004 * 109.46370 * 60.00063 * 21 20 19 38 38 H 1.08992 * 109.47304 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47079 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.46908 * 300.00020 * 22 21 20 41 41 H 0.96704 * 113.99868 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7852 1.2095 5 7 4.5833 -0.7840 1.2099 6 6 5.3149 0.2293 1.9743 7 6 5.4558 -0.2249 3.4043 8 1 5.0423 -1.1737 3.7128 9 6 6.1137 0.5703 4.3185 10 7 6.6177 1.7254 3.9428 11 14 6.2890 0.0069 6.0909 12 1 5.6395 -1.3183 6.2557 13 1 7.7293 -0.1009 6.4359 14 1 5.6370 0.9923 6.9904 15 6 5.2582 -1.7152 0.5069 16 8 4.6562 -2.4960 -0.1993 17 6 6.7607 -1.7860 0.5986 18 1 7.0694 -1.6318 1.6325 19 6 7.3773 -0.6998 -0.2851 20 6 8.9028 -0.7720 -0.1925 21 6 9.3781 -2.1466 -0.6674 22 6 8.7615 -3.2328 0.2162 23 6 7.2364 -3.1605 0.1239 24 1 6.9277 -3.3148 -0.9100 25 8 6.6604 -4.1750 0.9492 26 1 2.9709 1.0271 0.0543 27 1 2.9716 -0.4653 -0.9158 28 1 2.7548 -0.3192 2.1253 29 1 2.7555 -1.8116 1.1553 30 1 6.3040 0.3694 1.5383 31 1 4.7679 1.1717 1.9447 32 1 7.0809 2.2847 4.5860 33 1 7.0686 -0.8540 -1.3191 34 1 7.0384 0.2795 0.0530 35 1 9.3420 0.0021 -0.8217 36 1 9.2118 -0.6180 0.8414 37 1 9.0691 -2.3005 -1.7014 38 1 10.4648 -2.1982 -0.6011 39 1 9.0998 -4.2121 -0.1224 40 1 9.0704 -3.0788 1.2501 41 1 6.9194 -5.0743 0.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181078784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:28 Heat of formation + Delta-G solvation = -82.248883 kcal Electronic energy + Delta-G solvation = -22937.169182 eV Core-core repulsion = 19623.246871 eV Total energy + Delta-G solvation = -3313.922310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.94954 -37.86259 -36.51623 -35.39046 -34.97651 -32.88697 -31.65797 -30.20194 -29.21622 -27.16808 -24.46676 -23.31525 -22.43846 -21.89304 -19.75168 -18.33156 -17.40823 -16.97433 -16.63139 -16.30476 -15.66273 -14.75377 -14.62288 -14.43128 -14.33014 -13.99627 -13.58154 -13.34873 -13.21417 -12.75549 -12.63714 -12.35957 -12.20427 -12.08905 -11.91308 -11.57463 -11.49535 -11.18072 -11.08780 -10.95146 -10.79192 -10.64990 -10.53859 -10.35923 -10.15135 -10.01198 -9.70218 -9.53890 -8.92298 -8.55995 -7.82001 -6.21175 -4.27235 2.90243 2.99195 3.21048 3.30171 3.33635 3.40975 3.75645 4.32041 4.40165 4.47322 4.86611 4.92684 5.12460 5.16702 5.28039 5.37480 5.43500 5.47084 5.56042 5.62093 5.66414 5.70849 5.73787 5.91866 6.06273 6.15643 6.23078 6.28990 6.31303 6.33222 6.40033 6.40785 6.65236 6.74004 7.15560 7.47411 7.74258 7.75365 7.99214 8.02481 8.28773 8.78113 8.99549 9.40946 10.85409 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.008370 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.677334 B = 3344.450060 C = 5322.471510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.129 3.871 5 N -0.597 5.597 6 C 0.228 3.772 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.531 3.469 16 O -0.565 6.565 17 C -0.098 4.098 18 H 0.116 0.884 19 C -0.109 4.109 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.152 4.152 23 C 0.127 3.873 24 H 0.057 0.943 25 O -0.555 6.555 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.023 -4.509 -8.475 11.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.003 3.997 5 N -0.327 5.327 6 C 0.109 3.891 7 C -0.575 4.575 8 H 0.081 0.919 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.119 4.119 18 H 0.134 0.866 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.190 4.190 23 C 0.067 3.933 24 H 0.075 0.925 25 O -0.359 6.359 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.842 -4.204 -8.463 10.201 hybrid contribution 0.936 -0.581 0.948 1.453 sum 4.778 -4.786 -7.514 10.109 Atomic orbital electron populations 1.81167 1.13104 1.09553 1.09221 1.29156 0.95171 0.92529 0.92700 1.19803 0.81227 1.04552 1.03150 1.21070 0.81903 1.00518 0.96178 1.48178 1.05005 1.31484 1.48071 1.19671 0.92674 0.86048 0.90709 1.21550 1.36620 1.05370 0.93988 0.91921 1.24905 0.95110 0.94707 0.98957 1.69913 1.36949 1.10927 1.35138 0.86510 0.77937 0.78954 0.84542 1.19612 1.20851 1.20934 1.20309 0.89615 0.79463 0.78679 1.90579 1.70566 1.42139 1.41152 1.21256 0.92595 0.94144 1.03919 0.86586 1.21555 0.95352 0.98786 0.98929 1.21548 0.95325 0.96480 1.02345 1.21490 0.99812 0.94900 0.99155 1.22297 0.96357 0.98902 1.01462 1.21512 0.90429 0.87529 0.93795 0.92463 1.86631 1.73426 1.17258 1.58623 0.87165 0.87263 0.89308 0.90507 0.93106 0.94616 0.92611 0.91997 0.89562 0.91704 0.91033 0.92105 0.91978 0.92034 0.90858 0.78549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.79 18.54 42.15 0.78 -7.01 16 2 C 0.22 3.33 15.43 -20.76 -0.32 3.01 16 3 C -0.05 -0.62 6.00 -29.52 -0.18 -0.80 16 4 C 0.13 2.15 5.30 -4.04 -0.02 2.13 16 5 N -0.60 -11.35 2.46 -175.06 -0.43 -11.78 16 6 C 0.23 4.88 4.72 -5.19 -0.02 4.86 16 7 C -0.54 -13.23 9.04 -34.44 -0.31 -13.54 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -23.21 13.29 55.43 0.74 -22.47 16 11 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 15 C 0.53 10.22 6.53 -10.99 -0.07 10.15 16 16 O -0.56 -11.78 15.49 -1.16 -0.02 -11.80 16 17 C -0.10 -1.68 1.43 -91.77 -0.13 -1.81 16 18 H 0.12 2.30 7.11 -51.93 -0.37 1.93 16 19 C -0.11 -1.57 4.89 -26.73 -0.13 -1.70 16 20 C -0.12 -1.49 5.92 -26.73 -0.16 -1.64 16 21 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 22 C -0.15 -1.85 5.54 -26.75 -0.15 -2.00 16 23 C 0.13 1.91 2.44 -26.75 -0.07 1.85 16 24 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 25 O -0.56 -9.09 12.70 -41.95 -0.53 -9.62 16 26 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.09 1.49 8.04 -51.93 -0.42 1.08 16 29 H 0.08 1.34 7.63 -51.93 -0.40 0.94 16 30 H 0.05 1.09 4.39 -51.93 -0.23 0.86 16 31 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 33 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 34 H 0.09 1.33 5.96 -51.93 -0.31 1.02 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.37 4.18 9.08 45.56 0.41 4.59 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -29.81 339.61 -6.67 -36.48 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.49 Total: 5.33 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.82 Total: 0.66 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 1.09 Total: -41.26 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.55 Total: -21.42 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.81 -6.67 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.770 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds