Wall clock time and date at job start Tue Mar 31 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47131 * 303.01963 * 3 2 1 5 5 N 1.46499 * 109.47120 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00134 * 94.01186 * 5 4 3 7 7 C 1.50702 * 109.47379 * 84.85886 * 6 5 4 8 8 H 1.08002 * 119.99947 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00197 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00089 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99793 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47466 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47236 * 120.00631 * 11 9 7 14 14 H 1.48502 * 109.47080 * 240.00338 * 11 9 7 15 15 C 1.34784 * 120.00302 * 274.00963 * 5 4 3 16 16 O 1.21274 * 119.99611 * 5.11362 * 15 5 4 17 17 C 1.50694 * 119.99818 * 185.11121 * 15 5 4 18 18 H 1.08996 * 109.47858 * 40.88292 * 17 15 5 19 19 C 1.53001 * 109.47027 * 280.88118 * 17 15 5 20 20 C 1.53000 * 109.47220 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.47614 * 59.99614 * 20 19 17 22 22 C 1.53001 * 109.47142 * 300.00434 * 21 20 19 23 23 C 1.53002 * 109.47065 * 160.88512 * 17 15 5 24 24 H 1.09001 * 109.47384 * 59.99063 * 23 17 15 25 25 O 1.42899 * 109.46766 * 300.00023 * 23 17 15 26 26 H 1.09004 * 109.47336 * 183.02834 * 3 2 1 27 27 H 1.08999 * 109.47788 * 63.02649 * 3 2 1 28 28 H 1.08994 * 109.47518 * 300.00508 * 4 3 2 29 29 H 1.09003 * 109.46942 * 60.00629 * 4 3 2 30 30 H 1.08996 * 109.47536 * 204.86489 * 6 5 4 31 31 H 1.09002 * 109.46989 * 324.86578 * 6 5 4 32 32 H 0.97003 * 120.00074 * 180.02562 * 10 9 7 33 33 H 1.09008 * 109.47149 * 300.00126 * 19 17 15 34 34 H 1.08998 * 109.47453 * 60.00225 * 19 17 15 35 35 H 1.08996 * 109.47297 * 180.02562 * 20 19 17 36 36 H 1.09009 * 109.47127 * 299.99714 * 20 19 17 37 37 H 1.09004 * 109.46370 * 60.00063 * 21 20 19 38 38 H 1.08992 * 109.47304 * 180.02562 * 21 20 19 39 39 H 1.08997 * 109.47079 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.46908 * 300.00020 * 22 21 20 41 41 H 0.96704 * 113.99868 * 180.02562 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.7852 1.2095 5 7 4.5833 -0.7840 1.2099 6 6 5.3149 0.2293 1.9743 7 6 5.4558 -0.2249 3.4043 8 1 5.0423 -1.1737 3.7128 9 6 6.1137 0.5703 4.3185 10 7 6.6177 1.7254 3.9428 11 14 6.2890 0.0069 6.0909 12 1 5.6395 -1.3183 6.2557 13 1 7.7293 -0.1009 6.4359 14 1 5.6370 0.9923 6.9904 15 6 5.2582 -1.7152 0.5069 16 8 4.6562 -2.4960 -0.1993 17 6 6.7607 -1.7860 0.5986 18 1 7.0694 -1.6318 1.6325 19 6 7.3773 -0.6998 -0.2851 20 6 8.9028 -0.7720 -0.1925 21 6 9.3781 -2.1466 -0.6674 22 6 8.7615 -3.2328 0.2162 23 6 7.2364 -3.1605 0.1239 24 1 6.9277 -3.3148 -0.9100 25 8 6.6604 -4.1750 0.9492 26 1 2.9709 1.0271 0.0543 27 1 2.9716 -0.4653 -0.9158 28 1 2.7548 -0.3192 2.1253 29 1 2.7555 -1.8116 1.1553 30 1 6.3040 0.3694 1.5383 31 1 4.7679 1.1717 1.9447 32 1 7.0809 2.2847 4.5860 33 1 7.0686 -0.8540 -1.3191 34 1 7.0384 0.2795 0.0530 35 1 9.3420 0.0021 -0.8217 36 1 9.2118 -0.6180 0.8414 37 1 9.0691 -2.3005 -1.7014 38 1 10.4648 -2.1982 -0.6011 39 1 9.0998 -4.2121 -0.1224 40 1 9.0704 -3.0788 1.2501 41 1 6.9194 -5.0743 0.7055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181078784.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:27 Heat of formation + Delta-G solvation = -100.624900 kcal Electronic energy + Delta-G solvation = -22937.966026 eV Core-core repulsion = 19623.246871 eV Total energy + Delta-G solvation = -3314.719154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34439 -39.12227 -37.83468 -36.80099 -36.31708 -34.68068 -33.02906 -31.42117 -30.34299 -28.96123 -25.77401 -25.02045 -23.66713 -23.07289 -20.85654 -19.80222 -18.79665 -18.36092 -18.19458 -17.80062 -17.14420 -16.34061 -15.93158 -15.79829 -15.67480 -15.16976 -14.74035 -14.65545 -14.46084 -14.27907 -13.91927 -13.78087 -13.55076 -13.52565 -13.28740 -13.03462 -12.84792 -12.71532 -12.62354 -12.38516 -12.11666 -12.09189 -11.78592 -11.66751 -11.60485 -11.43744 -11.07371 -10.73845 -10.58322 -10.28535 -9.44806 -8.15489 -6.26376 1.40110 1.45324 1.54099 1.62463 1.76194 1.87563 2.32279 2.46447 3.14094 3.17287 3.35227 3.67228 3.83669 4.05907 4.12346 4.16956 4.28196 4.37243 4.45001 4.47047 4.53465 4.56843 4.61066 4.85079 4.92819 4.97439 5.02505 5.05541 5.21247 5.23468 5.26599 5.30433 5.33169 5.46858 5.59836 5.73981 5.89878 6.14439 6.52491 6.63301 6.88310 7.02192 7.38382 7.49284 8.89432 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.008370 C = 0.005259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.677334 B = 3344.450060 C = 5322.471510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.245 3.755 3 C -0.029 4.029 4 C 0.125 3.875 5 N -0.598 5.598 6 C 0.242 3.758 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.029 3.971 10 N -0.912 5.912 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.526 3.474 16 O -0.581 6.581 17 C -0.098 4.098 18 H 0.083 0.917 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.145 4.145 23 C 0.127 3.873 24 H 0.060 0.940 25 O -0.584 6.584 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.267 0.733 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -4.737 -9.500 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.072 4.072 3 C -0.070 4.070 4 C 0.000 4.000 5 N -0.328 5.328 6 C 0.122 3.878 7 C -0.583 4.583 8 H 0.062 0.938 9 C -0.172 4.172 10 N -0.551 5.551 11 Si 0.769 3.231 12 H -0.203 1.203 13 H -0.203 1.203 14 H -0.206 1.206 15 C 0.315 3.685 16 O -0.463 6.463 17 C -0.120 4.120 18 H 0.101 0.899 19 C -0.141 4.141 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.183 4.183 23 C 0.068 3.932 24 H 0.078 0.922 25 O -0.392 6.392 26 H 0.150 0.850 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.065 -4.444 -9.491 11.640 hybrid contribution 0.529 -0.562 1.286 1.500 sum 5.594 -5.006 -8.205 11.121 Atomic orbital electron populations 1.81193 1.14214 1.10898 1.10401 1.29240 0.95110 0.91322 0.91554 1.19693 0.80099 1.05303 1.01897 1.21127 0.80798 1.00536 0.97575 1.48134 1.05827 1.31147 1.47707 1.19380 0.92934 0.86092 0.89395 1.21714 1.36231 1.04545 0.95777 0.93758 1.25442 0.95109 0.94903 1.01743 1.69964 1.37576 1.11530 1.36050 0.85749 0.77926 0.78152 0.81295 1.20298 1.20329 1.20558 1.20737 0.90606 0.78918 0.78207 1.90559 1.71146 1.42587 1.41963 1.21302 0.91226 0.96730 1.02712 0.89865 1.21530 0.96783 0.96902 0.98894 1.21548 0.93720 0.98454 1.01794 1.21496 1.00902 0.93061 0.99428 1.22242 0.94027 1.00964 1.01086 1.21559 0.92293 0.86037 0.93305 0.92227 1.86574 1.74268 1.18930 1.59423 0.85021 0.86206 0.89746 0.91458 0.92993 0.95117 0.92423 0.90544 0.91040 0.89676 0.92928 0.90612 0.89958 0.89385 0.92411 0.76250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.52 18.54 20.00 0.37 -16.15 16 2 C 0.24 7.09 15.43 89.44 1.38 8.47 16 3 C -0.03 -0.74 6.00 28.79 0.17 -0.57 16 4 C 0.12 4.14 5.30 86.38 0.46 4.60 16 5 N -0.60 -22.80 2.46 -826.16 -2.04 -24.84 16 6 C 0.24 10.45 4.72 85.63 0.40 10.86 16 7 C -0.54 -27.19 9.04 25.60 0.23 -26.96 16 8 H 0.04 2.34 7.81 -2.91 -0.02 2.32 16 9 C 0.03 1.46 5.46 84.65 0.46 1.92 16 10 N -0.91 -47.46 13.29 21.45 0.28 -47.17 16 11 Si 0.94 41.33 29.54 68.60 2.03 43.36 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.53 20.21 6.53 87.65 0.57 20.79 16 16 O -0.58 -24.01 15.49 3.41 0.05 -23.96 16 17 C -0.10 -3.36 1.43 -11.54 -0.02 -3.38 16 18 H 0.08 3.40 7.11 -2.39 -0.02 3.38 16 19 C -0.10 -2.88 4.89 30.59 0.15 -2.73 16 20 C -0.12 -2.72 5.92 30.60 0.18 -2.54 16 21 C -0.11 -2.11 5.92 30.60 0.18 -1.93 16 22 C -0.15 -3.23 5.54 30.58 0.17 -3.06 16 23 C 0.13 3.70 2.44 30.58 0.07 3.77 16 24 H 0.06 1.71 7.90 -2.39 -0.02 1.69 16 25 O -0.58 -18.84 12.70 -142.55 -1.81 -20.65 16 26 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.08 2.85 8.04 -2.39 -0.02 2.84 16 29 H 0.07 2.36 7.63 -2.39 -0.02 2.34 16 30 H 0.05 2.26 4.39 -2.39 -0.01 2.25 16 31 H 0.03 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 33 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.07 2.19 5.96 -2.39 -0.01 2.17 16 35 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.39 8.38 9.08 -74.05 -0.67 7.71 16 Total: -1.00 -63.44 339.61 3.67 -59.77 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.36 Total: 20.40 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 4.42 Total: 9.24 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -1.38 Total: -88.16 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.76 Total: -44.61 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -63.44 3.67 -59.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181078784.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.853 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds