Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.53004 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.46988 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46947 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99975 * 66.04832 * 6 5 4 8 8 C 1.50694 * 109.46800 * 193.95393 * 7 6 5 9 9 H 1.07993 * 120.00672 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99566 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99907 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00033 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47137 * 90.00004 * 12 10 8 14 14 H 1.48503 * 109.46824 * 209.99822 * 12 10 8 15 15 H 1.48501 * 109.47090 * 329.99874 * 12 10 8 16 16 C 1.46904 * 111.00099 * 190.00431 * 6 5 4 17 17 C 1.50695 * 109.47190 * 170.00111 * 16 6 5 18 18 C 1.38678 * 120.41675 * 270.25239 * 17 16 6 19 19 C 1.38627 * 118.41930 * 180.24221 * 18 17 16 20 20 C 1.38232 * 119.16085 * 359.75178 * 19 18 17 21 21 N 1.31857 * 120.76541 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72235 * 0.02562 * 21 20 19 23 23 H 1.09010 * 109.47349 * 59.99572 * 1 2 3 24 24 H 1.08996 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47213 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.47176 * 60.00369 * 3 2 1 27 27 H 1.08999 * 109.47114 * 299.99927 * 3 2 1 28 28 H 1.09000 * 109.46592 * 60.00254 * 4 3 2 29 29 H 1.08994 * 109.47142 * 300.00792 * 4 3 2 30 30 H 1.09000 * 109.47131 * 60.00725 * 5 4 3 31 31 H 1.08994 * 109.47941 * 300.00444 * 5 4 3 32 32 H 1.09000 * 109.46805 * 313.95310 * 7 6 5 33 33 H 1.08999 * 109.46850 * 73.95561 * 7 6 5 34 34 H 0.97000 * 120.00369 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.46737 * 49.99930 * 16 6 5 36 36 H 1.08996 * 109.46745 * 289.99849 * 16 6 5 37 37 H 1.07994 * 120.78944 * 359.96926 * 18 17 16 38 38 H 1.07997 * 120.42083 * 179.72800 * 19 18 17 39 39 H 1.07999 * 119.61954 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.61237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4307 0.0000 6 7 5.5461 3.5963 0.0000 7 6 6.1320 3.1018 -1.2531 8 6 7.6241 2.9664 -1.0908 9 1 8.0904 3.2215 -0.1508 10 6 8.3937 2.5155 -2.1423 11 7 9.6958 2.3968 -2.0005 12 14 7.5870 2.0735 -3.7680 13 1 7.5415 3.2741 -4.6406 14 1 8.3730 1.0053 -4.4362 15 1 6.2052 1.5895 -3.5195 16 6 5.9170 4.9977 0.2376 17 6 7.4022 5.0910 0.4750 18 6 7.9168 4.9774 1.7577 19 6 9.2890 5.0746 1.9292 20 6 10.0935 5.2748 0.8231 21 7 9.5697 5.3727 -0.3830 22 6 8.2691 5.2850 -0.5835 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 4.1615 1.4703 -0.8892 29 1 4.1608 1.4704 0.8907 30 1 3.6672 3.9008 0.8896 31 1 3.6679 3.8999 -0.8903 32 1 5.7032 2.1296 -1.4959 33 1 5.9164 3.8053 -2.0573 34 1 10.2373 2.0793 -2.7401 35 1 5.3850 5.3709 1.1128 36 1 5.6499 5.5968 -0.6328 37 1 7.2636 4.8215 2.6035 38 1 9.7239 4.9953 2.9145 39 1 11.1635 5.3512 0.9481 40 1 7.8767 5.3704 -1.5861 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201681713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = 48.417730 kcal Electronic energy + Delta-G solvation = -19958.159460 eV Core-core repulsion = 17092.656150 eV Total energy + Delta-G solvation = -2865.503310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.40804 -37.18590 -33.68061 -32.52849 -31.31307 -30.40948 -29.11772 -28.22755 -26.23165 -23.70751 -22.47386 -22.21158 -20.77555 -19.81046 -17.08203 -16.22560 -16.08179 -15.56864 -15.27096 -14.79946 -14.64804 -14.38369 -13.94696 -13.67898 -13.49406 -13.15245 -12.89662 -12.72997 -12.35709 -12.13415 -12.07184 -11.97867 -11.73831 -11.34362 -11.11348 -10.76526 -10.62530 -10.42332 -10.11792 -9.99129 -9.82604 -9.41874 -8.77893 -8.54310 -8.25926 -7.74090 -7.56071 -7.49316 -6.03575 -3.95254 1.60480 2.19510 2.40893 2.55112 3.26597 3.35213 3.36966 4.40023 4.51654 4.93249 4.95216 4.95505 4.99227 5.23310 5.28478 5.44879 5.47310 5.50006 5.54334 5.59430 5.69292 5.77890 5.86576 5.88180 5.99494 6.10497 6.24375 6.32015 6.51031 6.61642 6.74052 6.80966 6.85834 7.07653 7.28320 7.57772 7.77716 7.82451 7.94535 8.61255 9.03793 9.19730 9.52951 11.03985 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.005168 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.016108 B = 5416.508599 C = 6610.827651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.265 6.265 3 C -0.078 4.078 4 C -0.102 4.102 5 C 0.063 3.937 6 N -0.524 5.524 7 C 0.155 3.845 8 C -0.512 4.512 9 H 0.099 0.901 10 C 0.077 3.923 11 N -0.865 5.865 12 Si 0.863 3.137 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.114 3.886 17 C -0.127 4.127 18 C -0.070 4.070 19 C -0.213 4.213 20 C 0.104 3.896 21 N -0.487 5.487 22 C 0.198 3.802 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.032 0.968 33 H -0.017 1.017 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 2.839 5.325 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.039 6.039 3 C -0.227 4.227 4 C -0.141 4.141 5 C -0.068 4.068 6 N -0.248 5.248 7 C 0.029 3.971 8 C -0.550 4.550 9 H 0.117 0.883 10 C -0.128 4.128 11 N -0.501 5.501 12 Si 0.691 3.309 13 H -0.204 1.204 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.014 4.014 17 C -0.129 4.129 18 C -0.096 4.096 19 C -0.233 4.233 20 C -0.052 4.052 21 N -0.196 5.196 22 C 0.040 3.960 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.001 0.999 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.081 1.747 4.898 13.153 hybrid contribution -2.078 0.664 -0.947 2.378 sum -14.159 2.411 3.951 14.896 Atomic orbital electron populations 1.23354 0.95025 1.06229 1.04607 1.87133 1.06330 1.12389 1.98038 1.23397 1.01460 0.93375 1.04445 1.21353 0.90626 0.97378 1.04720 1.21975 0.90102 0.95049 0.99624 1.62030 1.06623 1.17695 1.38448 1.20344 0.96853 0.94763 0.85108 1.21453 0.89086 1.43062 1.01350 0.88332 1.24886 0.94682 0.95142 0.98102 1.69895 1.04267 1.44082 1.31877 0.87045 0.80103 0.78693 0.85095 1.20358 1.21203 1.19253 1.20716 0.92239 0.89246 0.99206 1.20307 0.96022 1.02317 0.94265 1.21016 0.94818 0.97381 0.96388 1.21691 0.94607 1.07490 0.99550 1.22379 0.99195 0.95381 0.88286 1.67631 1.13750 1.14677 1.23546 1.22074 0.88180 0.88244 0.97463 0.90742 0.88320 0.90714 0.90247 0.90421 0.90395 0.90059 0.91656 0.95766 0.94972 0.99926 0.92652 0.91669 0.94993 0.86758 0.86850 0.84844 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.76 101.05 1.09 0.01 16 2 S -0.26 -3.41 22.38 -107.50 -2.41 -5.82 16 3 C -0.08 -0.94 5.94 37.16 0.22 -0.72 16 4 C -0.10 -1.54 5.18 -26.73 -0.14 -1.68 16 5 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 6 N -0.52 -10.09 4.56 -237.52 -1.08 -11.17 16 7 C 0.16 3.52 3.60 -4.98 -0.02 3.50 16 8 C -0.51 -13.44 5.93 -34.44 -0.20 -13.64 16 9 H 0.10 2.82 5.04 -52.49 -0.26 2.56 16 10 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 11 N -0.87 -25.32 13.96 55.43 0.77 -24.55 16 12 Si 0.86 20.91 27.47 -169.99 -4.67 16.24 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 16 C 0.11 2.02 5.14 -4.98 -0.03 1.99 16 17 C -0.13 -2.52 3.48 -104.48 -0.36 -2.89 16 18 C -0.07 -1.31 9.65 -39.28 -0.38 -1.69 16 19 C -0.21 -3.94 10.11 -39.44 -0.40 -4.34 16 20 C 0.10 2.12 11.18 -17.54 -0.20 1.92 16 21 N -0.49 -11.28 10.36 -13.25 -0.14 -11.41 16 22 C 0.20 4.41 7.00 -17.55 -0.12 4.29 16 23 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 26 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 28 H 0.08 1.37 6.31 -51.93 -0.33 1.04 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 31 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.03 0.76 5.04 -51.93 -0.26 0.50 16 33 H -0.02 -0.38 7.41 -51.93 -0.38 -0.77 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.06 0.98 7.89 -51.93 -0.41 0.57 16 36 H 0.03 0.55 7.96 -51.93 -0.41 0.13 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 40 H 0.14 3.14 7.67 -52.49 -0.40 2.74 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -30.00 332.57 -9.44 -39.44 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.27 Total: 2.53 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -0.66 Total: -10.27 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.45 Total: -47.13 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.41 Total: -5.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.00 -9.44 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201681713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.856 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds