Wall clock time and date at job start Tue Mar 31 2020 01:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.53004 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.46988 * 179.97438 * 4 3 2 6 6 N 1.46907 * 109.46947 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99975 * 66.04832 * 6 5 4 8 8 C 1.50694 * 109.46800 * 193.95393 * 7 6 5 9 9 H 1.07993 * 120.00672 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99566 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99907 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00033 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47137 * 90.00004 * 12 10 8 14 14 H 1.48503 * 109.46824 * 209.99822 * 12 10 8 15 15 H 1.48501 * 109.47090 * 329.99874 * 12 10 8 16 16 C 1.46904 * 111.00099 * 190.00431 * 6 5 4 17 17 C 1.50695 * 109.47190 * 170.00111 * 16 6 5 18 18 C 1.38678 * 120.41675 * 270.25239 * 17 16 6 19 19 C 1.38627 * 118.41930 * 180.24221 * 18 17 16 20 20 C 1.38232 * 119.16085 * 359.75178 * 19 18 17 21 21 N 1.31857 * 120.76541 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72235 * 0.02562 * 21 20 19 23 23 H 1.09010 * 109.47349 * 59.99572 * 1 2 3 24 24 H 1.08996 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47213 * 300.00053 * 1 2 3 26 26 H 1.09000 * 109.47176 * 60.00369 * 3 2 1 27 27 H 1.08999 * 109.47114 * 299.99927 * 3 2 1 28 28 H 1.09000 * 109.46592 * 60.00254 * 4 3 2 29 29 H 1.08994 * 109.47142 * 300.00792 * 4 3 2 30 30 H 1.09000 * 109.47131 * 60.00725 * 5 4 3 31 31 H 1.08994 * 109.47941 * 300.00444 * 5 4 3 32 32 H 1.09000 * 109.46805 * 313.95310 * 7 6 5 33 33 H 1.08999 * 109.46850 * 73.95561 * 7 6 5 34 34 H 0.97000 * 120.00369 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.46737 * 49.99930 * 16 6 5 36 36 H 1.08996 * 109.46745 * 289.99849 * 16 6 5 37 37 H 1.07994 * 120.78944 * 359.96926 * 18 17 16 38 38 H 1.07997 * 120.42083 * 179.72800 * 19 18 17 39 39 H 1.07999 * 119.61954 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.61237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4307 0.0000 6 7 5.5461 3.5963 0.0000 7 6 6.1320 3.1018 -1.2531 8 6 7.6241 2.9664 -1.0908 9 1 8.0904 3.2215 -0.1508 10 6 8.3937 2.5155 -2.1423 11 7 9.6958 2.3968 -2.0005 12 14 7.5870 2.0735 -3.7680 13 1 7.5415 3.2741 -4.6406 14 1 8.3730 1.0053 -4.4362 15 1 6.2052 1.5895 -3.5195 16 6 5.9170 4.9977 0.2376 17 6 7.4022 5.0910 0.4750 18 6 7.9168 4.9774 1.7577 19 6 9.2890 5.0746 1.9292 20 6 10.0935 5.2748 0.8231 21 7 9.5697 5.3727 -0.3830 22 6 8.2691 5.2850 -0.5835 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8031 2.2371 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 4.1615 1.4703 -0.8892 29 1 4.1608 1.4704 0.8907 30 1 3.6672 3.9008 0.8896 31 1 3.6679 3.8999 -0.8903 32 1 5.7032 2.1296 -1.4959 33 1 5.9164 3.8053 -2.0573 34 1 10.2373 2.0793 -2.7401 35 1 5.3850 5.3709 1.1128 36 1 5.6499 5.5968 -0.6328 37 1 7.2636 4.8215 2.6035 38 1 9.7239 4.9953 2.9145 39 1 11.1635 5.3512 0.9481 40 1 7.8767 5.3704 -1.5861 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201681713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:57 Heat of formation + Delta-G solvation = 29.336887 kcal Electronic energy + Delta-G solvation = -19958.986867 eV Core-core repulsion = 17092.656150 eV Total energy + Delta-G solvation = -2866.330717 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98369 -38.64637 -35.07747 -34.38757 -32.87201 -31.91208 -30.07308 -29.77767 -27.50671 -25.25564 -24.06709 -23.80443 -22.15050 -21.32175 -19.01491 -17.64209 -17.31806 -17.03974 -16.68834 -16.21524 -16.13693 -15.97293 -15.08493 -14.92101 -14.63222 -14.44152 -14.23921 -14.16513 -13.85548 -13.79255 -13.52564 -13.36681 -12.98207 -12.89901 -12.66561 -12.27331 -12.06633 -11.91623 -11.70820 -11.51960 -11.35485 -10.89228 -10.68187 -10.26700 -9.87568 -9.22101 -8.99772 -8.70983 -8.11215 -6.04739 0.61098 0.75588 0.86124 1.32006 1.36284 1.42255 1.72273 2.38711 3.05133 3.25156 3.51255 3.91859 3.97622 4.05465 4.19612 4.22828 4.30106 4.35073 4.38561 4.43016 4.47476 4.53223 4.63860 4.70532 4.72770 4.76883 4.88524 4.90144 5.08152 5.14611 5.18350 5.25075 5.29442 5.53732 5.65822 5.74685 6.08615 6.23870 6.41427 6.71844 6.94656 7.46656 7.58238 8.98351 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.005168 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.016108 B = 5416.508599 C = 6610.827651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.338 6.338 3 C -0.060 4.060 4 C -0.096 4.096 5 C 0.065 3.935 6 N -0.537 5.537 7 C 0.165 3.835 8 C -0.499 4.499 9 H 0.073 0.927 10 C 0.026 3.974 11 N -0.913 5.913 12 Si 0.914 3.086 13 H -0.274 1.274 14 H -0.292 1.292 15 H -0.256 1.256 16 C 0.114 3.886 17 C -0.127 4.127 18 C -0.075 4.075 19 C -0.200 4.200 20 C 0.077 3.923 21 N -0.521 5.521 22 C 0.174 3.826 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.034 0.966 32 H 0.024 0.976 33 H -0.019 1.019 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.036 0.964 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.664 3.557 6.991 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.113 6.113 3 C -0.208 4.208 4 C -0.135 4.135 5 C -0.065 4.065 6 N -0.261 5.261 7 C 0.038 3.962 8 C -0.538 4.538 9 H 0.091 0.909 10 C -0.174 4.174 11 N -0.552 5.552 12 Si 0.741 3.259 13 H -0.200 1.200 14 H -0.219 1.219 15 H -0.180 1.180 16 C -0.014 4.014 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.220 4.220 20 C -0.079 4.079 21 N -0.230 5.230 22 C 0.017 3.983 23 H 0.104 0.896 24 H 0.127 0.873 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.052 0.948 32 H 0.042 0.958 33 H -0.001 1.001 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.054 0.946 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.120 2.478 6.572 16.672 hybrid contribution -1.165 0.508 -1.303 1.820 sum -16.285 2.986 5.270 17.375 Atomic orbital electron populations 1.23391 0.90527 1.07381 1.05953 1.87409 1.11378 1.14242 1.98244 1.23252 0.99058 0.92377 1.06108 1.21225 0.92829 0.97001 1.02396 1.22080 0.87486 0.95297 1.01612 1.61906 1.09264 1.18699 1.36248 1.20072 0.94690 0.94505 0.86913 1.21585 0.90943 1.41334 0.99892 0.90945 1.25502 0.94978 0.95814 1.01089 1.70040 1.05634 1.47022 1.32493 0.86213 0.79624 0.78223 0.81853 1.20012 1.21864 1.18028 1.20835 0.90997 0.88527 1.01028 1.20559 0.97174 1.01088 0.94167 1.21464 0.95449 0.96296 0.96829 1.22116 0.94660 1.04686 1.00525 1.22794 1.00516 0.96301 0.88262 1.67503 1.14603 1.15456 1.25446 1.21934 0.88588 0.90305 0.97512 0.89593 0.87301 0.89093 0.87887 0.89268 0.93554 0.91590 0.88344 0.94793 0.95775 1.00136 0.93355 0.87900 0.94606 0.83506 0.83215 0.83198 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.76 113.37 1.22 -0.28 16 2 S -0.34 -8.21 22.38 -56.49 -1.26 -9.47 16 3 C -0.06 -1.27 5.94 71.98 0.43 -0.84 16 4 C -0.10 -2.72 5.18 30.59 0.16 -2.57 16 5 C 0.06 1.77 4.96 86.30 0.43 2.19 16 6 N -0.54 -19.58 4.56 -905.38 -4.13 -23.71 16 7 C 0.17 7.42 3.60 85.55 0.31 7.73 16 8 C -0.50 -26.66 5.93 25.60 0.15 -26.51 16 9 H 0.07 4.22 5.04 -2.91 -0.01 4.21 16 10 C 0.03 1.49 5.45 84.66 0.46 1.95 16 11 N -0.91 -55.59 13.96 21.45 0.30 -55.29 16 12 Si 0.91 44.17 27.47 68.60 1.88 46.05 16 13 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 14 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 15 H -0.26 -11.74 6.54 99.48 0.65 -11.08 16 16 C 0.11 3.73 5.14 85.55 0.44 4.17 16 17 C -0.13 -4.93 3.48 -19.77 -0.07 -5.00 16 18 C -0.07 -2.60 9.65 22.47 0.22 -2.38 16 19 C -0.20 -6.99 10.11 22.36 0.23 -6.76 16 20 C 0.08 3.14 11.18 84.69 0.95 4.08 16 21 N -0.52 -24.77 10.36 -195.83 -2.03 -26.80 16 22 C 0.17 7.94 7.00 84.67 0.59 8.53 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.61 6.31 -2.39 -0.02 1.59 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.09 7.93 -2.39 -0.02 2.07 16 31 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.02 1.13 5.04 -2.39 -0.01 1.12 16 33 H -0.02 -0.85 7.41 -2.39 -0.02 -0.87 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.10 2.60 7.89 -2.39 -0.02 2.58 16 36 H 0.04 1.15 7.96 -2.39 -0.02 1.13 16 37 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 38 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.15 5.36 8.06 -2.91 -0.02 5.34 16 40 H 0.12 5.57 7.67 -2.91 -0.02 5.55 16 Total: -1.00 -68.08 332.57 1.22 -66.86 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.95 Total: 18.05 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 5.51 Total: -15.69 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -5.86 Total: -105.80 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.26 Total: -9.47 kcal Total: -68.08 1.22 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201681713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.201 kcal (2) G-P(sol) polarization free energy of solvation -68.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds