Wall clock time and date at job start Tue Mar 31 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35981 * 116.99589 * 2 1 4 4 C 1.38719 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.38112 * 120.00528 * 180.02562 * 4 3 2 6 6 C 1.38723 * 119.99670 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99908 * 180.02562 * 6 5 4 8 8 C 1.42895 * 117.00048 * 354.57895 * 7 6 5 9 9 C 1.52995 * 109.47321 * 84.84850 * 8 7 6 10 10 C 1.52998 * 109.47452 * 204.84984 * 8 7 6 11 11 C 1.38676 * 120.00014 * 0.02651 * 6 5 4 12 12 C 1.50702 * 120.00164 * 179.97438 * 11 6 5 13 13 O 1.42898 * 109.47260 * 179.97438 * 12 11 6 14 14 C 1.42900 * 114.00102 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47387 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99571 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00277 * 180.02562 * 15 14 13 18 18 N 1.31527 * 119.99791 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00233 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46974 * 90.00081 * 19 17 15 21 21 H 1.48501 * 109.47271 * 209.99724 * 19 17 15 22 22 H 1.48493 * 109.47165 * 329.99957 * 19 17 15 23 23 C 1.38158 * 120.00108 * 0.22327 * 11 6 5 24 24 H 1.09003 * 109.47218 * 299.99488 * 1 2 3 25 25 H 1.08992 * 109.47421 * 60.00296 * 1 2 3 26 26 H 1.09002 * 109.46557 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99801 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.00435 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.47441 * 324.84611 * 8 7 6 30 30 H 1.09001 * 109.47424 * 299.99719 * 9 8 7 31 31 H 1.09000 * 109.47369 * 59.99830 * 9 8 7 32 32 H 1.09004 * 109.47659 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47193 * 59.99417 * 10 8 7 34 34 H 1.08999 * 109.47586 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.46997 * 300.00206 * 10 8 7 36 36 H 1.09007 * 109.46961 * 59.99773 * 12 11 6 37 37 H 1.08999 * 109.47004 * 300.00226 * 12 11 6 38 38 H 1.08997 * 109.47130 * 300.00881 * 14 13 12 39 39 H 1.09008 * 109.46939 * 60.00141 * 14 13 12 40 40 H 0.96995 * 119.99916 * 180.02562 * 18 17 15 41 41 H 1.07993 * 119.99914 * 179.72533 * 23 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3750 0.0005 5 6 1.9176 3.6057 0.0000 6 6 3.3029 3.6784 -0.0005 7 8 3.9202 4.8900 -0.0005 8 6 3.0852 6.0434 -0.1203 9 6 2.5623 6.4402 1.2617 10 6 3.8945 7.1999 -0.7106 11 6 4.0583 2.5154 -0.0011 12 6 5.5632 2.5943 -0.0023 13 8 6.1095 1.2738 -0.0020 14 6 7.5380 1.2358 -0.0037 15 6 8.0023 -0.1979 -0.0039 16 1 7.2789 -0.9997 -0.0034 17 6 9.3507 -0.4858 -0.0049 18 7 10.2317 0.4908 -0.0061 19 14 9.9262 -2.2629 -0.0045 20 1 10.0776 -2.7345 -1.4045 21 1 11.2329 -2.3599 0.6945 22 1 8.9259 -3.1070 0.6968 23 6 3.4312 1.2843 -0.0058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 0.2122 2.3184 0.0005 28 1 1.3294 4.5114 0.0000 29 1 2.2442 5.8168 -0.7757 30 1 1.9856 5.6164 1.6823 31 1 3.4032 6.6669 1.9171 32 1 1.9250 7.3198 1.1704 33 1 4.2671 6.9172 -1.6952 34 1 3.2577 8.0799 -0.8015 35 1 4.7356 7.4266 -0.0552 36 1 5.8999 3.1265 0.8875 37 1 5.8985 3.1265 -0.8925 38 1 7.9138 1.7393 -0.8943 39 1 7.9159 1.7403 0.8856 40 1 11.1802 0.2882 -0.0072 41 1 4.0194 0.3787 -0.0107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205609632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:49 Heat of formation + Delta-G solvation = -104.669430 kcal Electronic energy + Delta-G solvation = -21716.332700 eV Core-core repulsion = 18369.145411 eV Total energy + Delta-G solvation = -3347.187289 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49339 -39.07282 -37.18156 -35.98492 -33.21675 -32.74035 -31.35481 -29.53517 -27.61192 -27.31203 -26.89672 -25.21246 -23.27877 -22.15566 -21.09977 -20.68631 -18.16898 -17.52817 -16.59681 -16.30409 -15.75611 -15.43792 -15.14546 -14.81926 -14.70068 -14.49986 -14.23192 -13.82204 -13.42289 -13.30276 -12.83612 -12.61609 -12.46966 -12.39179 -12.20107 -12.03426 -11.74751 -11.66055 -11.23829 -11.06629 -10.85631 -10.78652 -10.71970 -10.41175 -10.26877 -10.00870 -9.06289 -8.96828 -8.54601 -8.12713 -7.53779 -6.06509 -4.07971 1.41539 1.62230 3.21713 3.34304 3.39029 3.43185 3.44863 3.87206 4.36772 4.59507 4.68731 4.71360 4.80371 4.92461 4.99341 5.09336 5.10775 5.28277 5.30091 5.34294 5.39704 5.52677 5.56638 5.60755 5.63169 5.74363 5.94528 5.97199 6.03564 6.09459 6.15843 6.38241 6.49101 6.55647 6.87255 7.16276 7.43402 7.47902 7.63925 7.84124 8.19418 8.60817 9.05194 9.56634 11.05105 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004383 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.743606 B = 6386.457385 C = 8239.018483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.087 3.913 4 C -0.179 4.179 5 C -0.176 4.176 6 C 0.097 3.903 7 O -0.306 6.306 8 C 0.077 3.923 9 C -0.180 4.180 10 C -0.149 4.149 11 C -0.066 4.066 12 C 0.111 3.889 13 O -0.394 6.394 14 C 0.196 3.804 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.084 4.084 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 10.687 -0.088 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.229 6.229 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.195 4.195 6 C 0.052 3.948 7 O -0.220 6.220 8 C 0.021 3.979 9 C -0.238 4.238 10 C -0.206 4.206 11 C -0.066 4.066 12 C 0.034 3.966 13 O -0.314 6.314 14 C 0.122 3.878 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.103 4.103 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.073 0.927 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.039 10.413 -0.067 22.583 hybrid contribution 0.025 -0.326 0.016 0.328 sum -20.014 10.087 -0.051 22.413 Atomic orbital electron populations 1.22976 0.79199 1.03559 1.00839 1.86124 1.20616 1.26825 1.89364 1.18932 0.92283 0.83998 1.00505 1.20908 0.99495 0.91764 1.07603 1.20870 0.92966 0.98090 1.07544 1.18573 0.90690 0.84824 1.00743 1.86169 1.35763 1.11735 1.88362 1.22371 0.93616 0.84991 0.96949 1.22391 1.02077 1.02016 0.97290 1.21850 1.00868 0.96027 1.01873 1.19091 0.95661 0.89802 1.02096 1.20799 0.87977 0.87601 1.00233 1.87799 1.24816 1.23445 1.95335 1.20215 0.74020 0.98025 0.95568 1.21058 0.91729 0.91680 1.50715 0.91463 1.24940 0.96239 0.98120 0.95174 1.69972 1.01640 1.31565 1.50641 0.86339 0.77971 0.83994 0.78215 1.20482 1.21123 1.19589 1.20290 0.90704 0.98862 1.00406 0.93065 0.93061 0.88541 0.85700 0.85322 0.91202 0.91866 0.91300 0.91327 0.91542 0.90812 0.91326 0.92648 0.92661 0.97547 0.97529 0.92690 0.82832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.64 10.50 -19.68 -0.21 -4.85 16 3 C 0.09 1.37 6.69 -39.24 -0.26 1.10 16 4 C -0.18 -2.33 9.03 -39.45 -0.36 -2.69 16 5 C -0.18 -2.29 8.23 -39.45 -0.32 -2.62 16 6 C 0.10 1.50 6.57 -39.24 -0.26 1.25 16 7 O -0.31 -4.46 9.22 -19.68 -0.18 -4.65 16 8 C 0.08 0.80 2.84 -26.74 -0.08 0.72 16 9 C -0.18 -1.60 9.17 37.15 0.34 -1.26 16 10 C -0.15 -1.30 9.56 37.16 0.36 -0.95 16 11 C -0.07 -1.20 5.89 -104.49 -0.62 -1.81 16 12 C 0.11 2.29 5.79 36.01 0.21 2.50 16 13 O -0.39 -9.83 8.81 -35.23 -0.31 -10.14 16 14 C 0.20 5.50 5.69 36.00 0.20 5.71 16 15 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 19 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.08 -1.54 9.31 -39.45 -0.37 -1.91 16 24 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 25 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 28 H 0.13 1.31 5.42 -52.49 -0.28 1.03 16 29 H 0.07 0.65 6.32 -51.93 -0.33 0.32 16 30 H 0.06 0.59 6.90 -51.93 -0.36 0.24 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.15 3.10 7.00 -52.49 -0.37 2.73 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -32.94 340.96 -6.66 -39.60 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -6.24 Total: -2.90 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.58 Total: -12.83 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.70 Total: -19.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.94 -6.66 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.067 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds