Wall clock time and date at job start Tue Mar 31 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35981 * 116.99589 * 2 1 4 4 C 1.38719 * 120.00290 * 0.02562 * 3 2 1 5 5 C 1.38112 * 120.00528 * 180.02562 * 4 3 2 6 6 C 1.38723 * 119.99670 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99908 * 180.02562 * 6 5 4 8 8 C 1.42895 * 117.00048 * 354.57895 * 7 6 5 9 9 C 1.52995 * 109.47321 * 84.84850 * 8 7 6 10 10 C 1.52998 * 109.47452 * 204.84984 * 8 7 6 11 11 C 1.38676 * 120.00014 * 0.02651 * 6 5 4 12 12 C 1.50702 * 120.00164 * 179.97438 * 11 6 5 13 13 O 1.42898 * 109.47260 * 179.97438 * 12 11 6 14 14 C 1.42900 * 114.00102 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47387 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99571 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00277 * 180.02562 * 15 14 13 18 18 N 1.31527 * 119.99791 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00233 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46974 * 90.00081 * 19 17 15 21 21 H 1.48501 * 109.47271 * 209.99724 * 19 17 15 22 22 H 1.48493 * 109.47165 * 329.99957 * 19 17 15 23 23 C 1.38158 * 120.00108 * 0.22327 * 11 6 5 24 24 H 1.09003 * 109.47218 * 299.99488 * 1 2 3 25 25 H 1.08992 * 109.47421 * 60.00296 * 1 2 3 26 26 H 1.09002 * 109.46557 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99801 * 359.97438 * 4 3 2 28 28 H 1.07996 * 120.00435 * 179.97438 * 5 4 3 29 29 H 1.09006 * 109.47441 * 324.84611 * 8 7 6 30 30 H 1.09001 * 109.47424 * 299.99719 * 9 8 7 31 31 H 1.09000 * 109.47369 * 59.99830 * 9 8 7 32 32 H 1.09004 * 109.47659 * 180.02562 * 9 8 7 33 33 H 1.09006 * 109.47193 * 59.99417 * 10 8 7 34 34 H 1.08999 * 109.47586 * 180.02562 * 10 8 7 35 35 H 1.09009 * 109.46997 * 300.00206 * 10 8 7 36 36 H 1.09007 * 109.46961 * 59.99773 * 12 11 6 37 37 H 1.08999 * 109.47004 * 300.00226 * 12 11 6 38 38 H 1.08997 * 109.47130 * 300.00881 * 14 13 12 39 39 H 1.09008 * 109.46939 * 60.00141 * 14 13 12 40 40 H 0.96995 * 119.99916 * 180.02562 * 18 17 15 41 41 H 1.07993 * 119.99914 * 179.72533 * 23 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2907 2.3750 0.0005 5 6 1.9176 3.6057 0.0000 6 6 3.3029 3.6784 -0.0005 7 8 3.9202 4.8900 -0.0005 8 6 3.0852 6.0434 -0.1203 9 6 2.5623 6.4402 1.2617 10 6 3.8945 7.1999 -0.7106 11 6 4.0583 2.5154 -0.0011 12 6 5.5632 2.5943 -0.0023 13 8 6.1095 1.2738 -0.0020 14 6 7.5380 1.2358 -0.0037 15 6 8.0023 -0.1979 -0.0039 16 1 7.2789 -0.9997 -0.0034 17 6 9.3507 -0.4858 -0.0049 18 7 10.2317 0.4908 -0.0061 19 14 9.9262 -2.2629 -0.0045 20 1 10.0776 -2.7345 -1.4045 21 1 11.2329 -2.3599 0.6945 22 1 8.9259 -3.1070 0.6968 23 6 3.4312 1.2843 -0.0058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 0.2122 2.3184 0.0005 28 1 1.3294 4.5114 0.0000 29 1 2.2442 5.8168 -0.7757 30 1 1.9856 5.6164 1.6823 31 1 3.4032 6.6669 1.9171 32 1 1.9250 7.3198 1.1704 33 1 4.2671 6.9172 -1.6952 34 1 3.2577 8.0799 -0.8015 35 1 4.7356 7.4266 -0.0552 36 1 5.8999 3.1265 0.8875 37 1 5.8985 3.1265 -0.8925 38 1 7.9138 1.7393 -0.8943 39 1 7.9159 1.7403 0.8856 40 1 11.1802 0.2882 -0.0072 41 1 4.0194 0.3787 -0.0107 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205609632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:49 Heat of formation + Delta-G solvation = -125.735680 kcal Electronic energy + Delta-G solvation = -21717.246201 eV Core-core repulsion = 18369.145411 eV Total energy + Delta-G solvation = -3348.100790 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.151 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.61821 -40.09822 -38.85083 -37.37441 -34.97774 -34.06808 -32.71771 -30.69178 -29.43585 -28.30466 -27.75742 -26.76603 -24.74511 -23.98436 -22.26483 -21.71465 -19.34512 -18.71059 -18.37288 -17.88236 -16.94699 -16.91227 -16.48857 -16.29172 -16.22428 -15.73297 -15.52657 -15.33079 -14.58611 -14.40997 -14.16973 -13.92233 -13.56288 -13.43438 -13.23592 -13.09686 -12.96730 -12.89370 -12.77480 -12.72477 -12.46577 -12.08668 -12.03131 -11.94328 -11.46058 -11.30080 -11.23144 -10.97505 -10.38966 -9.84765 -8.68221 -8.33334 -6.46251 0.20189 0.44309 1.39249 1.42767 1.54931 2.24492 2.33753 2.46332 2.66680 3.00296 3.01151 3.73794 3.81754 3.89352 4.02316 4.17378 4.22809 4.24257 4.36783 4.37724 4.44257 4.45884 4.54440 4.72194 4.74015 4.76242 4.82681 4.84855 4.89752 4.97025 5.13213 5.17060 5.18667 5.25680 5.32267 5.35852 5.51745 5.63137 5.92950 6.41425 6.48227 6.58909 6.77246 7.25273 8.79390 Molecular weight = 280.15amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.004383 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.743606 B = 6386.457385 C = 8239.018483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.083 3.917 4 C -0.160 4.160 5 C -0.161 4.161 6 C 0.096 3.904 7 O -0.329 6.329 8 C 0.065 3.935 9 C -0.177 4.177 10 C -0.148 4.148 11 C -0.095 4.095 12 C 0.112 3.888 13 O -0.403 6.403 14 C 0.209 3.791 15 C -0.550 4.550 16 H 0.062 0.938 17 C 0.008 3.992 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.265 1.265 23 C -0.114 4.114 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.052 0.948 38 H -0.012 1.012 39 H -0.012 1.012 40 H 0.272 0.728 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.189 11.173 -0.162 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.038 3.962 4 C -0.178 4.178 5 C -0.179 4.179 6 C 0.051 3.949 7 O -0.245 6.245 8 C 0.010 3.990 9 C -0.234 4.234 10 C -0.205 4.205 11 C -0.096 4.096 12 C 0.035 3.965 13 O -0.323 6.323 14 C 0.134 3.866 15 C -0.587 4.587 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.569 5.569 19 Si 0.808 3.192 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.189 1.189 23 C -0.132 4.132 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.132 0.868 27 H 0.185 0.815 28 H 0.185 0.815 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.081 0.919 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.836 10.922 -0.142 25.314 hybrid contribution 0.761 -0.361 0.035 0.843 sum -22.076 10.562 -0.108 24.472 Atomic orbital electron populations 1.23363 0.76293 1.05511 1.02481 1.86094 1.23666 1.26665 1.89273 1.18913 0.91375 0.85502 1.00366 1.21336 1.01352 0.90407 1.04740 1.21274 0.91806 0.99666 1.05136 1.18572 0.91607 0.84386 1.00362 1.86162 1.37670 1.12387 1.88238 1.22785 0.94003 0.83808 0.98423 1.22380 1.01996 1.03122 0.95891 1.21900 1.01074 0.96620 1.00926 1.18892 0.93857 0.91437 1.05418 1.20876 0.90310 0.85399 0.99882 1.87785 1.22907 1.26326 1.95271 1.19875 0.75763 0.97303 0.93675 1.21361 0.92647 0.92149 1.52574 0.91998 1.25980 0.95859 1.03524 0.93735 1.70079 1.02313 1.34212 1.50325 0.85151 0.77754 0.77389 0.78922 1.19154 1.19667 1.18921 1.20063 0.92368 0.97574 1.03233 0.91305 0.91272 0.86752 0.81495 0.81493 0.89394 0.92158 0.92539 0.88322 0.92458 0.87686 0.92361 0.93095 0.92987 0.99421 0.99453 0.91942 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.83 10.50 -93.34 -0.98 -10.81 16 3 C 0.08 2.57 6.69 22.49 0.15 2.72 16 4 C -0.16 -3.65 9.03 22.35 0.20 -3.45 16 5 C -0.16 -3.69 8.23 22.36 0.18 -3.51 16 6 C 0.10 2.95 6.57 22.49 0.15 3.10 16 7 O -0.33 -9.54 9.22 -93.34 -0.86 -10.40 16 8 C 0.07 1.20 2.84 30.59 0.09 1.29 16 9 C -0.18 -2.65 9.17 71.98 0.66 -1.99 16 10 C -0.15 -2.35 9.56 71.98 0.69 -1.66 16 11 C -0.10 -3.66 5.89 -19.78 -0.12 -3.78 16 12 C 0.11 5.00 5.79 71.24 0.41 5.41 16 13 O -0.40 -21.75 8.81 -148.98 -1.31 -23.06 16 14 C 0.21 12.54 5.69 71.23 0.41 12.95 16 15 C -0.55 -34.36 9.43 25.60 0.24 -34.11 16 16 H 0.06 3.83 7.81 -2.91 -0.02 3.81 16 17 C 0.01 0.45 5.46 84.65 0.46 0.91 16 18 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 19 Si 0.99 45.86 29.54 68.60 2.03 47.89 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.11 -4.40 9.31 22.36 0.21 -4.19 16 24 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 25 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.17 2.40 6.29 -2.91 -0.02 2.38 16 28 H 0.17 2.54 5.42 -2.91 -0.02 2.53 16 29 H 0.09 1.30 6.32 -2.38 -0.02 1.29 16 30 H 0.06 0.94 6.90 -2.39 -0.02 0.93 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 39 H -0.01 -0.77 8.14 -2.38 -0.02 -0.78 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.12 5.27 7.00 -2.91 -0.02 5.25 16 Total: -1.00 -75.63 340.96 5.01 -70.62 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.01 Total: 8.03 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 4.85 Total: -24.92 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.28 Total: -57.35 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -3.15 Total: -44.27 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.63 5.01 -70.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205609632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.118 kcal (2) G-P(sol) polarization free energy of solvation -75.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds